Wall clock time and date at job start Tue Mar 31 2020 11:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00254 * 2 1 4 4 C 1.53002 * 109.47059 * 276.54979 * 3 2 1 5 5 O 1.42897 * 110.02143 * 56.33906 * 4 3 2 6 6 C 1.54270 * 110.02991 * 294.94852 * 4 3 2 7 7 C 1.54967 * 104.15942 * 217.13866 * 6 4 3 8 8 C 1.54882 * 102.77657 * 37.88738 * 7 6 4 9 9 C 1.53876 * 110.03396 * 177.73389 * 4 3 2 10 10 S 1.65601 * 119.99892 * 180.02562 * 2 1 3 11 11 O 1.42106 * 104.27356 * 325.38679 * 10 2 1 12 12 O 1.42099 * 104.27768 * 197.52591 * 10 2 1 13 13 C 1.81406 * 104.44878 * 81.45468 * 10 2 1 14 14 C 1.52995 * 109.46763 * 188.98764 * 13 10 2 15 15 C 1.50704 * 115.55471 * 303.22714 * 14 13 10 16 16 H 1.08000 * 119.99867 * 99.46326 * 15 14 13 17 17 C 1.37870 * 119.99991 * 279.19687 * 15 14 13 18 18 N 1.31519 * 120.00375 * 355.33040 * 17 15 14 19 19 Si 1.86805 * 120.00162 * 175.33296 * 17 15 14 20 20 H 1.48497 * 109.47070 * 59.99749 * 19 17 15 21 21 H 1.48493 * 109.47276 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46713 * 299.99762 * 19 17 15 23 23 C 1.53007 * 117.52116 * 88.93232 * 14 13 10 24 24 C 1.53002 * 59.99928 * 107.48085 * 23 14 13 25 25 H 1.08998 * 109.46601 * 269.99937 * 1 2 3 26 26 H 1.09000 * 109.47052 * 29.99473 * 1 2 3 27 27 H 1.08999 * 109.47473 * 149.99690 * 1 2 3 28 28 H 1.09002 * 109.46742 * 36.54448 * 3 2 1 29 29 H 1.08994 * 109.47093 * 156.54506 * 3 2 1 30 30 H 0.96697 * 114.00270 * 300.70379 * 5 4 3 31 31 H 1.08998 * 110.48948 * 335.78417 * 6 4 3 32 32 H 1.09000 * 110.48681 * 98.43164 * 6 4 3 33 33 H 1.09001 * 110.71563 * 279.57623 * 7 6 4 34 34 H 1.09001 * 110.76187 * 156.22700 * 7 6 4 35 35 H 1.09002 * 110.48997 * 203.40154 * 8 7 6 36 36 H 1.09004 * 110.48738 * 80.76673 * 8 7 6 37 37 H 1.08999 * 110.03455 * 238.56817 * 9 4 3 38 38 H 1.09000 * 110.02853 * 359.97438 * 9 4 3 39 39 H 1.08998 * 109.46802 * 68.98941 * 13 10 2 40 40 H 1.08996 * 109.47119 * 308.98350 * 13 10 2 41 41 H 0.96995 * 120.00670 * 185.00238 * 18 17 15 42 42 H 1.08992 * 117.49815 * 214.96868 * 23 14 13 43 43 H 1.09002 * 117.49499 * 359.97438 * 23 14 13 44 44 H 1.09003 * 117.49669 * 252.51630 * 24 23 14 45 45 H 1.08996 * 117.52070 * 107.49120 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3101 1.7926 -1.4331 5 8 1.0093 1.9218 -2.0103 6 6 3.1713 0.8332 -2.2804 7 6 3.9770 1.7714 -3.2142 8 6 4.3018 2.9741 -2.2940 9 6 3.0283 3.1535 -1.4420 10 16 2.2930 -1.4342 -0.0006 11 8 1.4866 -2.3046 0.7813 12 8 3.6055 -1.0813 0.4142 13 6 2.2933 -1.9559 -1.7381 14 6 2.8360 -3.3826 -1.8419 15 6 4.2136 -3.5974 -1.2701 16 1 4.3287 -4.0239 -0.2846 17 6 5.3271 -3.2544 -2.0071 18 7 5.1913 -2.8262 -3.2432 19 14 7.0289 -3.3981 -1.2503 20 1 7.2787 -4.8084 -0.8580 21 1 8.0492 -2.9725 -2.2417 22 1 7.1116 -2.5282 -0.0496 23 6 1.8328 -4.5313 -1.7183 24 6 2.4495 -4.1972 -3.0781 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6642 1.9961 0.6119 29 1 3.1957 1.1119 0.4090 30 1 0.5097 1.0946 -2.0433 31 1 3.8443 0.2604 -1.6424 32 1 2.5370 0.1658 -2.8638 33 1 3.3687 2.0869 -4.0619 34 1 4.8922 1.2862 -3.5533 35 1 4.4926 3.8682 -2.8876 36 1 5.1576 2.7477 -1.6580 37 1 2.3849 3.9123 -1.8873 38 1 3.2962 3.4408 -0.4253 39 1 2.9247 -1.2838 -2.3191 40 1 1.2755 -1.9251 -2.1268 41 1 5.9766 -2.6541 -3.7860 42 1 2.1693 -5.4422 -1.2233 43 1 0.7860 -4.2707 -1.5624 44 1 1.8082 -3.7167 -3.8171 45 1 3.1917 -4.8881 -3.4779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331649184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:11 Heat of formation + Delta-G solvation = -96.106293 kcal Electronic energy + Delta-G solvation = -27628.367757 eV Core-core repulsion = 23966.891412 eV Total energy + Delta-G solvation = -3661.476345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.50325 -36.78936 -36.33926 -35.60429 -35.08309 -34.46748 -32.07087 -29.65332 -29.17518 -27.88990 -25.98054 -25.52551 -23.80503 -21.21827 -20.84913 -19.81556 -19.53286 -18.43015 -17.12064 -16.77807 -16.48699 -15.90888 -15.47812 -15.26817 -14.92565 -14.68008 -14.14550 -13.75605 -13.54404 -13.38004 -13.15220 -13.04066 -12.64368 -12.33723 -12.09551 -11.91851 -11.80954 -11.61289 -11.26456 -11.14636 -11.12120 -11.00589 -10.94787 -10.89032 -10.70967 -10.62175 -10.57156 -10.44793 -10.39916 -10.06857 -9.97891 -9.64012 -9.06604 -8.70925 -8.55487 -8.07193 -6.15864 -4.29491 0.99483 3.27538 3.31762 3.33866 3.44120 4.21297 4.36611 4.54458 4.62343 4.71082 4.83940 4.88582 4.98352 5.11066 5.18735 5.27842 5.35662 5.49956 5.56624 5.59592 5.63376 5.74547 5.80711 5.84247 5.88554 5.91631 5.96448 6.00643 6.14744 6.23771 6.26800 6.31146 6.34765 6.36925 6.53892 6.61059 6.69287 6.78065 6.97460 7.18929 7.40522 7.70059 7.77104 8.17143 8.76525 9.44109 10.90420 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.007129 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.049617 B = 3926.526616 C = 4913.147395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.018 6.018 3 C 0.093 3.907 4 C 0.111 3.889 5 O -0.558 6.558 6 C -0.174 4.174 7 C -0.115 4.115 8 C -0.125 4.125 9 C -0.108 4.108 10 S 2.606 3.394 11 O -0.969 6.969 12 O -0.945 6.945 13 C -0.575 4.575 14 C 0.046 3.954 15 C -0.525 4.525 16 H 0.066 0.934 17 C 0.088 3.912 18 N -0.869 5.869 19 Si 0.885 3.115 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.265 1.265 23 C -0.207 4.207 24 C -0.139 4.139 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.372 0.628 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.149 0.851 40 H 0.095 0.905 41 H 0.264 0.736 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.039 10.688 0.656 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.854 5.854 3 C -0.033 4.033 4 C 0.068 3.932 5 O -0.365 6.365 6 C -0.211 4.211 7 C -0.153 4.153 8 C -0.163 4.163 9 C -0.146 4.146 10 S 2.704 3.296 11 O -0.960 6.960 12 O -0.936 6.936 13 C -0.707 4.707 14 C 0.044 3.956 15 C -0.562 4.562 16 H 0.084 0.916 17 C -0.118 4.118 18 N -0.504 5.504 19 Si 0.711 3.289 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.189 1.189 23 C -0.244 4.244 24 C -0.178 4.178 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.221 0.779 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.167 0.833 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.413 11.076 1.283 12.863 hybrid contribution 0.469 -0.611 -0.421 0.878 sum -5.944 10.465 0.863 12.066 Atomic orbital electron populations 1.21571 0.79409 1.02665 1.02526 1.57941 1.14721 1.21995 1.90726 1.22141 0.98879 0.85516 0.96737 1.22423 0.83260 0.95716 0.91772 1.86503 1.28293 1.37652 1.84072 1.23643 0.99824 0.98394 0.99288 1.22377 1.00138 0.95317 0.97453 1.22387 0.97296 0.98539 0.98072 1.22083 0.96287 0.95435 1.00818 1.05274 0.73452 0.72145 0.78687 1.93488 1.70038 1.65038 1.67414 1.93510 1.37589 1.81469 1.80998 1.30481 1.07236 1.10500 1.22514 1.18209 0.93498 0.83372 1.00522 1.20494 0.88200 1.44438 1.03094 0.91564 1.24904 0.99190 0.93074 0.94596 1.69971 1.30172 1.43090 1.07190 0.86735 0.83205 0.79036 0.79886 1.20009 1.21041 1.18939 1.23125 0.96808 1.01754 1.02708 1.22530 1.01457 1.04013 0.89797 0.92396 0.90512 0.91343 0.90028 0.87625 0.77882 0.89142 0.89873 0.91547 0.90919 0.91576 0.91172 0.90417 0.90774 0.83303 0.88638 0.92646 0.89650 0.91100 0.91716 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.99 9.25 59.85 0.55 1.55 16 2 N -1.02 -15.47 2.76 -121.75 -0.34 -15.81 16 3 C 0.09 1.30 4.52 -4.04 -0.02 1.29 16 4 C 0.11 1.49 1.12 -89.50 -0.10 1.39 16 5 O -0.56 -7.21 12.16 -35.23 -0.43 -7.64 16 6 C -0.17 -2.75 3.81 -25.03 -0.10 -2.84 16 7 C -0.12 -1.64 6.91 -24.70 -0.17 -1.81 16 8 C -0.13 -1.52 6.83 -25.08 -0.17 -1.69 16 9 C -0.11 -1.28 6.27 -25.61 -0.16 -1.44 16 10 S 2.61 53.23 4.11 -107.50 -0.44 52.79 16 11 O -0.97 -21.92 17.41 -57.54 -1.00 -22.92 16 12 O -0.95 -22.19 15.00 -57.54 -0.86 -23.06 16 13 C -0.57 -11.69 5.16 37.16 0.19 -11.50 16 14 C 0.05 1.10 1.45 -155.66 -0.23 0.88 16 15 C -0.53 -14.14 7.80 -34.44 -0.27 -14.41 16 16 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 17 C 0.09 2.36 5.44 -17.82 -0.10 2.26 16 18 N -0.87 -23.12 12.85 55.43 0.71 -22.41 16 19 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.26 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.21 -4.47 9.93 -26.73 -0.27 -4.74 16 24 C -0.14 -3.10 9.42 -26.73 -0.25 -3.35 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.71 5.99 -51.93 -0.31 0.40 16 27 H 0.07 0.76 8.00 -51.93 -0.42 0.34 16 28 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 29 H 0.11 1.62 6.64 -51.93 -0.34 1.27 16 30 H 0.37 4.13 6.32 45.56 0.29 4.41 16 31 H 0.09 1.68 5.80 -51.93 -0.30 1.38 16 32 H 0.08 1.33 5.98 -51.93 -0.31 1.02 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 38 H 0.07 0.77 7.67 -51.93 -0.40 0.37 16 39 H 0.15 3.08 4.07 -51.92 -0.21 2.87 16 40 H 0.10 1.60 8.10 -51.93 -0.42 1.18 16 41 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 42 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -31.51 357.11 -9.69 -41.20 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -6.61 Total: 10.64 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: -1.08 Total: -34.42 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.38 Total: -38.21 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -2.29 Total: -53.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 53.23 SS G_CDS: -0.44 Total: 52.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.51 -9.69 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331649184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.907 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds