Wall clock time and date at job start Tue Mar 31 2020 11:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00254 * 2 1 4 4 C 1.53002 * 109.47059 * 276.54979 * 3 2 1 5 5 O 1.42897 * 110.02143 * 56.33906 * 4 3 2 6 6 C 1.54270 * 110.02991 * 294.94852 * 4 3 2 7 7 C 1.54967 * 104.15942 * 217.13866 * 6 4 3 8 8 C 1.54882 * 102.77657 * 37.88738 * 7 6 4 9 9 C 1.53876 * 110.03396 * 177.73389 * 4 3 2 10 10 S 1.65601 * 119.99892 * 180.02562 * 2 1 3 11 11 O 1.42106 * 104.27356 * 325.38679 * 10 2 1 12 12 O 1.42099 * 104.27768 * 197.52591 * 10 2 1 13 13 C 1.81406 * 104.44878 * 81.45468 * 10 2 1 14 14 C 1.52995 * 109.46763 * 188.98764 * 13 10 2 15 15 C 1.50704 * 115.55471 * 303.22714 * 14 13 10 16 16 H 1.08000 * 119.99867 * 99.46326 * 15 14 13 17 17 C 1.37870 * 119.99991 * 279.19687 * 15 14 13 18 18 N 1.31519 * 120.00375 * 355.33040 * 17 15 14 19 19 Si 1.86805 * 120.00162 * 175.33296 * 17 15 14 20 20 H 1.48497 * 109.47070 * 59.99749 * 19 17 15 21 21 H 1.48493 * 109.47276 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46713 * 299.99762 * 19 17 15 23 23 C 1.53007 * 117.52116 * 88.93232 * 14 13 10 24 24 C 1.53002 * 59.99928 * 107.48085 * 23 14 13 25 25 H 1.08998 * 109.46601 * 269.99937 * 1 2 3 26 26 H 1.09000 * 109.47052 * 29.99473 * 1 2 3 27 27 H 1.08999 * 109.47473 * 149.99690 * 1 2 3 28 28 H 1.09002 * 109.46742 * 36.54448 * 3 2 1 29 29 H 1.08994 * 109.47093 * 156.54506 * 3 2 1 30 30 H 0.96697 * 114.00270 * 300.70379 * 5 4 3 31 31 H 1.08998 * 110.48948 * 335.78417 * 6 4 3 32 32 H 1.09000 * 110.48681 * 98.43164 * 6 4 3 33 33 H 1.09001 * 110.71563 * 279.57623 * 7 6 4 34 34 H 1.09001 * 110.76187 * 156.22700 * 7 6 4 35 35 H 1.09002 * 110.48997 * 203.40154 * 8 7 6 36 36 H 1.09004 * 110.48738 * 80.76673 * 8 7 6 37 37 H 1.08999 * 110.03455 * 238.56817 * 9 4 3 38 38 H 1.09000 * 110.02853 * 359.97438 * 9 4 3 39 39 H 1.08998 * 109.46802 * 68.98941 * 13 10 2 40 40 H 1.08996 * 109.47119 * 308.98350 * 13 10 2 41 41 H 0.96995 * 120.00670 * 185.00238 * 18 17 15 42 42 H 1.08992 * 117.49815 * 214.96868 * 23 14 13 43 43 H 1.09002 * 117.49499 * 359.97438 * 23 14 13 44 44 H 1.09003 * 117.49669 * 252.51630 * 24 23 14 45 45 H 1.08996 * 117.52070 * 107.49120 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3101 1.7926 -1.4331 5 8 1.0093 1.9218 -2.0103 6 6 3.1713 0.8332 -2.2804 7 6 3.9770 1.7714 -3.2142 8 6 4.3018 2.9741 -2.2940 9 6 3.0283 3.1535 -1.4420 10 16 2.2930 -1.4342 -0.0006 11 8 1.4866 -2.3046 0.7813 12 8 3.6055 -1.0813 0.4142 13 6 2.2933 -1.9559 -1.7381 14 6 2.8360 -3.3826 -1.8419 15 6 4.2136 -3.5974 -1.2701 16 1 4.3287 -4.0239 -0.2846 17 6 5.3271 -3.2544 -2.0071 18 7 5.1913 -2.8262 -3.2432 19 14 7.0289 -3.3981 -1.2503 20 1 7.2787 -4.8084 -0.8580 21 1 8.0492 -2.9725 -2.2417 22 1 7.1116 -2.5282 -0.0496 23 6 1.8328 -4.5313 -1.7183 24 6 2.4495 -4.1972 -3.0781 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6642 1.9961 0.6119 29 1 3.1957 1.1119 0.4090 30 1 0.5097 1.0946 -2.0433 31 1 3.8443 0.2604 -1.6424 32 1 2.5370 0.1658 -2.8638 33 1 3.3687 2.0869 -4.0619 34 1 4.8922 1.2862 -3.5533 35 1 4.4926 3.8682 -2.8876 36 1 5.1576 2.7477 -1.6580 37 1 2.3849 3.9123 -1.8873 38 1 3.2962 3.4408 -0.4253 39 1 2.9247 -1.2838 -2.3191 40 1 1.2755 -1.9251 -2.1268 41 1 5.9766 -2.6541 -3.7860 42 1 2.1693 -5.4422 -1.2233 43 1 0.7860 -4.2707 -1.5624 44 1 1.8082 -3.7167 -3.8171 45 1 3.1917 -4.8881 -3.4779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331649184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:10 Heat of formation + Delta-G solvation = -118.179361 kcal Electronic energy + Delta-G solvation = -27629.324917 eV Core-core repulsion = 23966.891412 eV Total energy + Delta-G solvation = -3662.433505 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.57699 -38.57361 -38.01237 -36.90472 -36.58795 -35.52771 -34.09556 -30.76464 -30.45749 -29.25557 -27.51557 -27.02354 -24.98173 -22.96553 -21.97967 -21.32077 -20.83405 -19.90283 -18.62052 -18.34489 -17.85024 -17.18304 -16.86821 -16.60389 -16.51682 -16.38036 -15.65187 -15.26768 -14.96247 -14.61327 -14.32322 -14.27321 -13.79598 -13.75773 -13.59375 -13.40458 -13.12172 -13.07166 -13.03360 -12.87325 -12.81362 -12.48687 -12.39600 -12.22522 -12.18004 -12.04411 -11.98560 -11.82584 -11.64772 -11.45822 -11.40786 -11.10040 -10.95136 -10.49829 -10.05193 -9.67239 -8.20039 -6.36504 -0.56443 1.34466 1.38438 1.46672 1.90582 2.37761 2.98172 3.06741 3.21999 3.30025 3.43822 3.56833 3.62590 3.79603 3.86610 4.05594 4.20896 4.29973 4.37328 4.47449 4.52295 4.55064 4.59559 4.64837 4.72814 4.77264 4.82605 4.84162 4.91027 4.96659 4.97802 5.04273 5.11047 5.15026 5.20718 5.22848 5.31649 5.42812 5.46791 5.61658 5.64899 5.70669 6.21519 6.69164 6.76403 7.37421 8.85315 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.007129 C = 0.005698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.049617 B = 3926.526616 C = 4913.147395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -1.008 6.008 3 C 0.089 3.911 4 C 0.119 3.881 5 O -0.555 6.555 6 C -0.180 4.180 7 C -0.119 4.119 8 C -0.123 4.123 9 C -0.106 4.106 10 S 2.615 3.385 11 O -0.997 6.997 12 O -0.987 6.987 13 C -0.571 4.571 14 C 0.015 3.985 15 C -0.543 4.543 16 H 0.043 0.957 17 C 0.055 3.945 18 N -0.880 5.880 19 Si 0.920 3.080 20 H -0.269 1.269 21 H -0.271 1.271 22 H -0.278 1.278 23 C -0.197 4.197 24 C -0.135 4.135 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.380 0.620 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.144 0.856 40 H 0.133 0.867 41 H 0.266 0.734 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.841 12.567 0.212 15.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.847 5.847 3 C -0.037 4.037 4 C 0.077 3.923 5 O -0.364 6.364 6 C -0.218 4.218 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.144 4.144 10 S 2.713 3.287 11 O -0.987 6.987 12 O -0.977 6.977 13 C -0.704 4.704 14 C 0.013 3.987 15 C -0.581 4.581 16 H 0.062 0.938 17 C -0.149 4.149 18 N -0.515 5.515 19 Si 0.745 3.255 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.203 1.203 23 C -0.234 4.234 24 C -0.174 4.174 25 H 0.082 0.918 26 H 0.127 0.873 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.231 0.769 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.106 0.894 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.217 12.932 0.835 15.345 hybrid contribution 0.979 -1.198 -0.275 1.571 sum -7.239 11.735 0.561 13.799 Atomic orbital electron populations 1.21937 0.76863 1.04776 1.03699 1.57502 1.16119 1.20575 1.90466 1.22325 0.98390 0.85250 0.97697 1.22312 0.83343 0.95938 0.90724 1.86504 1.27749 1.38259 1.83894 1.23621 0.99851 0.98886 0.99450 1.22400 0.99305 0.95916 0.97990 1.22394 0.97445 0.98346 0.97873 1.22125 0.95870 0.94548 1.01878 1.04676 0.72692 0.72847 0.78469 1.93443 1.70325 1.66715 1.68241 1.93452 1.40189 1.82314 1.81779 1.30366 1.09133 1.08151 1.22730 1.18327 0.92966 0.85680 1.01753 1.20645 0.90517 1.44552 1.02363 0.93834 1.25357 1.01269 0.93232 0.95082 1.69996 1.30656 1.43438 1.07452 0.86194 0.81220 0.78937 0.79144 1.19430 1.19513 1.20335 1.23194 0.97824 1.00606 1.01746 1.22465 1.01304 1.03376 0.90225 0.91823 0.87287 0.90385 0.86891 0.89537 0.76937 0.92539 0.90439 0.90540 0.92777 0.89411 0.91808 0.89217 0.89124 0.83825 0.84899 0.92512 0.90391 0.88250 0.89434 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 9.25 127.77 1.18 2.64 16 2 N -1.01 -28.83 2.76 -539.12 -1.49 -30.31 16 3 C 0.09 2.31 4.52 86.38 0.39 2.70 16 4 C 0.12 2.96 1.12 -10.07 -0.01 2.94 16 5 O -0.56 -12.39 12.16 -148.98 -1.81 -14.20 16 6 C -0.18 -5.61 3.81 31.70 0.12 -5.49 16 7 C -0.12 -3.30 6.91 31.91 0.22 -3.07 16 8 C -0.12 -2.77 6.83 31.67 0.22 -2.55 16 9 C -0.11 -2.21 6.27 31.32 0.20 -2.02 16 10 S 2.61 106.45 4.11 -56.49 -0.23 106.22 16 11 O -1.00 -44.76 17.41 -127.65 -2.22 -46.99 16 12 O -0.99 -47.83 15.00 -127.65 -1.92 -49.74 16 13 C -0.57 -22.84 5.16 71.98 0.37 -22.46 16 14 C 0.01 0.71 1.45 -52.92 -0.08 0.63 16 15 C -0.54 -30.05 7.80 25.60 0.20 -29.85 16 16 H 0.04 2.52 7.82 -2.91 -0.02 2.50 16 17 C 0.05 3.00 5.44 84.65 0.46 3.46 16 18 N -0.88 -47.47 12.85 21.45 0.28 -47.19 16 19 Si 0.92 44.31 29.54 68.60 2.03 46.33 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.20 -8.32 9.93 30.60 0.30 -8.02 16 24 C -0.13 -5.92 9.42 30.60 0.29 -5.64 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.11 1.54 5.99 -2.39 -0.01 1.53 16 27 H 0.08 1.46 8.00 -2.39 -0.02 1.44 16 28 H 0.11 2.26 8.12 -2.39 -0.02 2.24 16 29 H 0.09 2.63 6.64 -2.39 -0.02 2.61 16 30 H 0.38 7.00 6.32 -74.06 -0.47 6.53 16 31 H 0.06 2.16 5.80 -2.39 -0.01 2.14 16 32 H 0.08 2.43 5.98 -2.39 -0.01 2.41 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.09 1.69 7.95 -2.39 -0.02 1.67 16 38 H 0.09 1.59 7.67 -2.39 -0.02 1.58 16 39 H 0.14 5.97 4.07 -2.39 -0.01 5.96 16 40 H 0.13 4.13 8.10 -2.39 -0.02 4.11 16 41 H 0.27 13.71 8.32 -92.71 -0.77 12.94 16 42 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 43 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 44 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 45 H 0.07 3.15 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -69.31 357.11 -0.98 -70.29 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.52 Total: 32.31 kcal Atomic # 6 Polarization: -70.58 SS G_CDS: 3.86 Total: -66.72 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -1.21 Total: -77.51 kcal Atomic # 8 Polarization: -104.98 SS G_CDS: -5.95 Total: -110.93 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 106.45 SS G_CDS: -0.23 Total: 106.22 kcal Total: -69.31 -0.98 -70.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331649184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.886 kcal (2) G-P(sol) polarization free energy of solvation -69.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds