Wall clock time and date at job start Tue Mar 31 2020 11:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00038 * 2 1 4 4 C 1.53001 * 109.47000 * 274.99551 * 3 2 1 5 5 H 1.09001 * 109.47899 * 60.02631 * 4 3 2 6 6 C 1.53092 * 109.48050 * 180.02562 * 4 3 2 7 7 C 1.53178 * 109.16379 * 177.59192 * 6 4 3 8 8 C 1.53172 * 109.03597 * 303.02144 * 7 6 4 9 9 C 1.53100 * 109.16422 * 56.98006 * 8 7 6 10 10 O 1.42899 * 109.41454 * 302.38900 * 9 8 7 11 11 S 1.65598 * 120.00112 * 179.97438 * 2 1 3 12 12 O 1.42097 * 104.27911 * 153.93204 * 11 2 1 13 13 O 1.42104 * 104.27757 * 26.07516 * 11 2 1 14 14 C 1.81396 * 104.45160 * 270.00391 * 11 2 1 15 15 C 1.53004 * 109.47185 * 172.79052 * 14 11 2 16 16 C 1.50701 * 115.56242 * 40.26141 * 15 14 11 17 17 H 1.08003 * 119.99933 * 267.51717 * 16 15 14 18 18 C 1.37875 * 120.00247 * 87.50861 * 16 15 14 19 19 N 1.31515 * 119.99953 * 353.90172 * 18 16 15 20 20 Si 1.86800 * 120.00267 * 173.90390 * 18 16 15 21 21 H 1.48502 * 109.46971 * 59.99689 * 20 18 16 22 22 H 1.48491 * 109.47316 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46602 * 299.99968 * 20 18 16 24 24 C 1.53005 * 117.49748 * 185.94655 * 15 14 11 25 25 C 1.52996 * 117.50008 * 254.56874 * 15 14 11 26 26 H 1.08992 * 109.47329 * 270.00248 * 1 2 3 27 27 H 1.09006 * 109.46773 * 30.00581 * 1 2 3 28 28 H 1.09003 * 109.47002 * 150.00018 * 1 2 3 29 29 H 1.08998 * 109.46745 * 34.99561 * 3 2 1 30 30 H 1.08997 * 109.46959 * 154.99322 * 3 2 1 31 31 H 1.08999 * 109.52217 * 297.50142 * 6 4 3 32 32 H 1.09006 * 109.52030 * 57.68834 * 6 4 3 33 33 H 1.09000 * 109.54403 * 183.15679 * 7 6 4 34 34 H 1.08994 * 109.61322 * 62.93107 * 7 6 4 35 35 H 1.08996 * 109.52616 * 297.07485 * 8 7 6 36 36 H 1.08998 * 109.57722 * 176.91589 * 8 7 6 37 37 H 1.08995 * 109.47904 * 182.40819 * 9 8 7 38 38 H 1.08998 * 109.48778 * 62.38076 * 9 8 7 39 39 H 1.09001 * 109.46907 * 52.79634 * 14 11 2 40 40 H 1.08996 * 109.47248 * 292.79505 * 14 11 2 41 41 H 0.96997 * 120.00370 * 185.02210 * 19 18 16 42 42 H 1.08994 * 117.49749 * 0.02562 * 24 15 14 43 43 H 1.09002 * 117.49466 * 214.98033 * 24 15 14 44 44 H 1.08996 * 117.49668 * 145.02095 * 25 15 14 45 45 H 1.08995 * 117.51859 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7732 -1.4370 5 1 1.3555 1.9247 -1.8714 6 6 3.1097 3.0987 -1.4374 7 6 3.3044 3.5666 -2.8829 8 6 4.0349 2.4728 -3.6679 9 6 3.2331 1.1714 -3.5815 10 8 3.0619 0.8092 -2.2098 11 16 2.2930 -1.4341 0.0006 12 8 3.5395 -1.1194 -0.6046 13 8 1.3970 -2.3564 -0.6043 14 6 2.5193 -1.8254 1.7574 15 6 3.1191 -3.2263 1.8947 16 6 4.1888 -3.5767 0.8928 17 1 3.9238 -4.0749 -0.0281 18 6 5.5058 -3.2612 1.1515 19 7 5.8151 -2.5497 2.2134 20 14 6.8508 -3.8444 -0.0062 21 1 6.6096 -3.2920 -1.3634 22 1 8.1694 -3.3772 0.4918 23 1 6.8426 -5.3281 -0.0669 24 6 3.2581 -3.7999 3.3063 25 6 2.1903 -4.3501 2.3587 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6501 2.0043 0.5894 30 1 3.1857 1.1177 0.4344 31 1 2.5419 3.8477 -0.8854 32 1 4.0824 2.9574 -0.9661 33 1 3.8977 4.4809 -2.8934 34 1 2.3333 3.7566 -3.3399 35 1 5.0262 2.3188 -3.2418 36 1 4.1297 2.7735 -4.7113 37 1 3.7697 0.3786 -4.1025 38 1 2.2566 1.3145 -4.0443 39 1 1.5548 -1.7919 2.2642 40 1 3.1922 -1.0962 2.2083 41 1 6.7314 -2.2658 2.3570 42 1 2.9219 -3.1795 4.1370 43 1 4.1233 -4.4308 3.5102 44 1 2.3530 -5.3428 1.9392 45 1 1.1520 -4.0917 2.5666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333268293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:51 Heat of formation + Delta-G solvation = -96.450453 kcal Electronic energy + Delta-G solvation = -26870.116134 eV Core-core repulsion = 23208.624865 eV Total energy + Delta-G solvation = -3661.491269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.28142 -36.64538 -35.93269 -35.85790 -34.59031 -33.45730 -31.96383 -31.52633 -28.06697 -27.55427 -25.53237 -25.12602 -23.71008 -21.93020 -21.12287 -20.19148 -19.42258 -18.00632 -16.89740 -16.42194 -16.05864 -15.87152 -15.41361 -14.96422 -14.59059 -14.50835 -14.34352 -13.93245 -13.68702 -13.57088 -13.12858 -12.94907 -12.58206 -12.33651 -12.27102 -12.05751 -11.80450 -11.70014 -11.19748 -11.10733 -10.97949 -10.89813 -10.84402 -10.78124 -10.69692 -10.50598 -10.45770 -10.23482 -10.15520 -9.95583 -9.60383 -9.19591 -8.91303 -8.60466 -8.43673 -7.99399 -6.07875 -4.22133 1.33990 3.40295 3.41883 3.51081 3.60285 4.03165 4.47097 4.71774 4.81965 4.86768 4.96158 5.02816 5.11848 5.15553 5.23326 5.29790 5.32001 5.35608 5.47679 5.58139 5.64077 5.67804 5.75588 5.81356 5.84545 5.89825 5.93536 5.98831 6.06200 6.07509 6.16582 6.26633 6.36196 6.41720 6.48069 6.69708 6.77007 7.00392 7.07429 7.27643 7.47734 7.58398 7.85909 8.26985 8.85826 9.54204 10.99656 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.005693 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.886037 B = 4917.132965 C = 6050.894475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.014 6.014 3 C 0.134 3.866 4 C 0.069 3.931 5 H 0.054 0.946 6 C -0.151 4.151 7 C -0.119 4.119 8 C -0.157 4.157 9 C 0.057 3.943 10 O -0.340 6.340 11 S 2.624 3.376 12 O -0.912 6.912 13 O -0.977 6.977 14 C -0.568 4.568 15 C 0.051 3.949 16 C -0.538 4.538 17 H 0.068 0.932 18 C 0.097 3.903 19 N -0.869 5.869 20 Si 0.889 3.111 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.142 4.142 25 C -0.206 4.206 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.264 0.736 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.177 12.948 -4.859 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.849 5.849 3 C 0.008 3.992 4 C 0.009 3.991 5 H 0.072 0.928 6 C -0.189 4.189 7 C -0.156 4.156 8 C -0.195 4.195 9 C -0.020 4.020 10 O -0.258 6.258 11 S 2.719 3.281 12 O -0.901 6.901 13 O -0.968 6.968 14 C -0.699 4.699 15 C 0.049 3.951 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.109 4.109 19 N -0.503 5.503 20 Si 0.716 3.284 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.181 4.181 25 C -0.243 4.243 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.060 0.940 39 H 0.109 0.891 40 H 0.141 0.859 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.706 12.376 -5.412 15.551 hybrid contribution 0.520 0.379 0.123 0.655 sum -7.186 12.755 -5.289 15.567 Atomic orbital electron populations 1.21458 0.80010 1.03525 1.01097 1.58020 1.14358 1.22060 1.90454 1.21214 0.97573 0.86130 0.94271 1.22557 0.94264 0.88709 0.93569 0.92820 1.22179 1.02159 0.97264 0.97320 1.21539 1.00397 0.98207 0.95470 1.22204 1.00721 0.96178 1.00379 1.22549 0.98361 0.96622 0.84478 1.88359 1.75623 1.42428 1.19414 1.04866 0.73636 0.71732 0.77836 1.93587 1.42157 1.81464 1.72939 1.93437 1.66187 1.62355 1.74778 1.30110 1.06448 1.08862 1.24498 1.18173 0.95603 0.85170 0.96176 1.20532 0.90696 1.42349 1.03996 0.91423 1.24875 0.98499 0.93262 0.94307 1.69956 1.19619 1.34314 1.26447 0.86668 0.80415 0.79130 0.82211 1.19000 1.21104 1.20034 1.22495 0.98980 1.03430 0.93195 1.23133 0.94073 0.99981 1.07157 0.93451 0.91785 0.90043 0.89762 0.89016 0.91123 0.90440 0.91743 0.92206 0.90776 0.91421 0.88911 0.94019 0.89050 0.85900 0.92617 0.91770 0.89580 0.89744 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 10.66 59.85 0.64 1.76 16 2 N -1.01 -16.82 3.00 -121.76 -0.36 -17.19 16 3 C 0.13 1.92 5.09 -4.04 -0.02 1.90 16 4 C 0.07 0.96 2.91 -26.68 -0.08 0.89 16 5 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 6 C -0.15 -1.69 5.42 -26.59 -0.14 -1.83 16 7 C -0.12 -1.20 6.03 -26.55 -0.16 -1.36 16 8 C -0.16 -1.81 6.14 -26.59 -0.16 -1.97 16 9 C 0.06 0.81 6.84 37.21 0.25 1.06 16 10 O -0.34 -6.07 8.06 -56.25 -0.45 -6.53 16 11 S 2.62 58.13 4.47 -107.50 -0.48 57.65 16 12 O -0.91 -23.14 14.09 -66.03 -0.93 -24.07 16 13 O -0.98 -23.73 16.57 -57.54 -0.95 -24.68 16 14 C -0.57 -12.51 6.28 37.16 0.23 -12.28 16 15 C 0.05 1.29 1.69 -155.66 -0.26 1.02 16 16 C -0.54 -15.21 6.97 -34.44 -0.24 -15.45 16 17 H 0.07 1.97 7.82 -52.48 -0.41 1.56 16 18 C 0.10 2.75 5.38 -17.82 -0.10 2.65 16 19 N -0.87 -24.57 12.81 55.43 0.71 -23.86 16 20 Si 0.89 22.29 29.55 -169.99 -5.02 17.27 16 21 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.14 -3.36 9.31 -26.73 -0.25 -3.61 16 25 C -0.21 -4.66 9.88 -26.73 -0.26 -4.93 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.67 8.07 -51.93 -0.42 0.25 16 28 H 0.08 1.18 6.91 -51.93 -0.36 0.82 16 29 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 30 H 0.09 1.44 7.61 -51.93 -0.40 1.05 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.09 1.70 7.95 -51.92 -0.41 1.29 16 40 H 0.12 2.72 8.14 -51.93 -0.42 2.30 16 41 H 0.26 7.14 8.32 -40.82 -0.34 6.80 16 42 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 44 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 45 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -34.14 369.34 -10.37 -44.51 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.89 Total: 3.45 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: -0.55 Total: -32.14 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.35 Total: -41.05 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -2.34 Total: -55.27 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 58.13 SS G_CDS: -0.48 Total: 57.65 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.14 -10.37 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333268293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.936 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds