Wall clock time and date at job start Tue Mar 31 2020 11:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00038 * 2 1 4 4 C 1.53001 * 109.47000 * 274.99551 * 3 2 1 5 5 H 1.09001 * 109.47899 * 60.02631 * 4 3 2 6 6 C 1.53092 * 109.48050 * 180.02562 * 4 3 2 7 7 C 1.53178 * 109.16379 * 177.59192 * 6 4 3 8 8 C 1.53172 * 109.03597 * 303.02144 * 7 6 4 9 9 C 1.53100 * 109.16422 * 56.98006 * 8 7 6 10 10 O 1.42899 * 109.41454 * 302.38900 * 9 8 7 11 11 S 1.65598 * 120.00112 * 179.97438 * 2 1 3 12 12 O 1.42097 * 104.27911 * 153.93204 * 11 2 1 13 13 O 1.42104 * 104.27757 * 26.07516 * 11 2 1 14 14 C 1.81396 * 104.45160 * 270.00391 * 11 2 1 15 15 C 1.53004 * 109.47185 * 172.79052 * 14 11 2 16 16 C 1.50701 * 115.56242 * 40.26141 * 15 14 11 17 17 H 1.08003 * 119.99933 * 267.51717 * 16 15 14 18 18 C 1.37875 * 120.00247 * 87.50861 * 16 15 14 19 19 N 1.31515 * 119.99953 * 353.90172 * 18 16 15 20 20 Si 1.86800 * 120.00267 * 173.90390 * 18 16 15 21 21 H 1.48502 * 109.46971 * 59.99689 * 20 18 16 22 22 H 1.48491 * 109.47316 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46602 * 299.99968 * 20 18 16 24 24 C 1.53005 * 117.49748 * 185.94655 * 15 14 11 25 25 C 1.52996 * 117.50008 * 254.56874 * 15 14 11 26 26 H 1.08992 * 109.47329 * 270.00248 * 1 2 3 27 27 H 1.09006 * 109.46773 * 30.00581 * 1 2 3 28 28 H 1.09003 * 109.47002 * 150.00018 * 1 2 3 29 29 H 1.08998 * 109.46745 * 34.99561 * 3 2 1 30 30 H 1.08997 * 109.46959 * 154.99322 * 3 2 1 31 31 H 1.08999 * 109.52217 * 297.50142 * 6 4 3 32 32 H 1.09006 * 109.52030 * 57.68834 * 6 4 3 33 33 H 1.09000 * 109.54403 * 183.15679 * 7 6 4 34 34 H 1.08994 * 109.61322 * 62.93107 * 7 6 4 35 35 H 1.08996 * 109.52616 * 297.07485 * 8 7 6 36 36 H 1.08998 * 109.57722 * 176.91589 * 8 7 6 37 37 H 1.08995 * 109.47904 * 182.40819 * 9 8 7 38 38 H 1.08998 * 109.48778 * 62.38076 * 9 8 7 39 39 H 1.09001 * 109.46907 * 52.79634 * 14 11 2 40 40 H 1.08996 * 109.47248 * 292.79505 * 14 11 2 41 41 H 0.96997 * 120.00370 * 185.02210 * 19 18 16 42 42 H 1.08994 * 117.49749 * 0.02562 * 24 15 14 43 43 H 1.09002 * 117.49466 * 214.98033 * 24 15 14 44 44 H 1.08996 * 117.49668 * 145.02095 * 25 15 14 45 45 H 1.08995 * 117.51859 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3437 1.7732 -1.4370 5 1 1.3555 1.9247 -1.8714 6 6 3.1097 3.0987 -1.4374 7 6 3.3044 3.5666 -2.8829 8 6 4.0349 2.4728 -3.6679 9 6 3.2331 1.1714 -3.5815 10 8 3.0619 0.8092 -2.2098 11 16 2.2930 -1.4341 0.0006 12 8 3.5395 -1.1194 -0.6046 13 8 1.3970 -2.3564 -0.6043 14 6 2.5193 -1.8254 1.7574 15 6 3.1191 -3.2263 1.8947 16 6 4.1888 -3.5767 0.8928 17 1 3.9238 -4.0749 -0.0281 18 6 5.5058 -3.2612 1.1515 19 7 5.8151 -2.5497 2.2134 20 14 6.8508 -3.8444 -0.0062 21 1 6.6096 -3.2920 -1.3634 22 1 8.1694 -3.3772 0.4918 23 1 6.8426 -5.3281 -0.0669 24 6 3.2581 -3.7999 3.3063 25 6 2.1903 -4.3501 2.3587 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5140 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6501 2.0043 0.5894 30 1 3.1857 1.1177 0.4344 31 1 2.5419 3.8477 -0.8854 32 1 4.0824 2.9574 -0.9661 33 1 3.8977 4.4809 -2.8934 34 1 2.3333 3.7566 -3.3399 35 1 5.0262 2.3188 -3.2418 36 1 4.1297 2.7735 -4.7113 37 1 3.7697 0.3786 -4.1025 38 1 2.2566 1.3145 -4.0443 39 1 1.5548 -1.7919 2.2642 40 1 3.1922 -1.0962 2.2083 41 1 6.7314 -2.2658 2.3570 42 1 2.9219 -3.1795 4.1370 43 1 4.1233 -4.4308 3.5102 44 1 2.3530 -5.3428 1.9392 45 1 1.1520 -4.0917 2.5666 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333268293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:51 Heat of formation + Delta-G solvation = -118.823888 kcal Electronic energy + Delta-G solvation = -26871.086319 eV Core-core repulsion = 23208.624865 eV Total energy + Delta-G solvation = -3662.461454 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.32720 -38.52923 -37.72932 -37.07505 -36.38495 -34.44007 -34.08611 -32.56054 -29.83723 -28.58406 -27.53913 -26.32060 -24.72778 -23.01992 -22.95460 -21.36480 -21.09965 -19.58972 -18.49980 -18.17864 -17.32381 -17.11494 -16.80959 -16.71396 -16.38022 -15.64735 -15.53846 -15.46441 -15.17659 -14.90938 -14.61174 -14.13342 -13.86373 -13.80380 -13.61463 -13.40915 -13.23274 -13.03603 -12.99963 -12.86984 -12.64508 -12.43236 -12.41658 -12.18352 -12.11347 -12.05111 -11.86025 -11.79164 -11.66754 -11.52978 -11.17792 -10.87576 -10.49909 -10.26001 -10.05006 -9.66321 -8.22183 -6.39320 -0.32925 1.34257 1.39136 1.45659 2.17217 2.39722 2.97543 3.07265 3.27254 3.39520 3.62143 3.79963 3.89554 3.97584 4.01784 4.09249 4.15661 4.30946 4.33127 4.37452 4.50009 4.58079 4.60354 4.63424 4.72593 4.73541 4.82904 4.85702 4.89001 4.96959 4.97598 5.01242 5.07861 5.14969 5.19466 5.23006 5.23539 5.41729 5.46270 5.61192 5.68134 5.83393 6.21261 6.54326 6.68852 7.37533 8.84736 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014453 B = 0.005693 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.886037 B = 4917.132965 C = 6050.894475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -1.007 6.007 3 C 0.126 3.874 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.147 4.147 7 C -0.115 4.115 8 C -0.153 4.153 9 C 0.047 3.953 10 O -0.388 6.388 11 S 2.630 3.370 12 O -0.957 6.957 13 O -1.008 7.008 14 C -0.563 4.563 15 C 0.012 3.988 16 C -0.552 4.552 17 H 0.044 0.956 18 C 0.060 3.940 19 N -0.885 5.885 20 Si 0.925 3.075 21 H -0.280 1.280 22 H -0.270 1.270 23 H -0.264 1.264 24 C -0.138 4.138 25 C -0.192 4.192 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.133 0.867 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.128 0.872 40 H 0.117 0.883 41 H 0.266 0.734 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.079 0.921 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.049 15.188 -4.303 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.845 5.845 3 C 0.000 4.000 4 C 0.001 3.999 5 H 0.089 0.911 6 C -0.186 4.186 7 C -0.153 4.153 8 C -0.191 4.191 9 C -0.030 4.030 10 O -0.307 6.307 11 S 2.727 3.273 12 O -0.946 6.946 13 O -0.999 6.999 14 C -0.694 4.694 15 C 0.010 3.990 16 C -0.590 4.590 17 H 0.062 0.938 18 C -0.145 4.145 19 N -0.520 5.520 20 Si 0.750 3.250 21 H -0.206 1.206 22 H -0.194 1.194 23 H -0.189 1.189 24 C -0.177 4.177 25 C -0.229 4.229 26 H 0.094 0.906 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.135 0.865 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.097 0.903 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.572 14.600 -4.855 18.121 hybrid contribution 1.020 -0.300 -0.068 1.065 sum -8.552 14.300 -4.923 17.374 Atomic orbital electron populations 1.21778 0.77511 1.04383 1.03299 1.57526 1.15765 1.20968 1.90256 1.21573 0.97040 0.85880 0.95477 1.22810 0.95134 0.89201 0.92784 0.91095 1.22171 1.01297 0.96612 0.98482 1.21560 1.01314 0.97961 0.94438 1.22166 0.99403 0.95568 1.01976 1.22695 0.99509 0.97458 0.83311 1.88303 1.76586 1.44763 1.21068 1.04257 0.72873 0.72472 0.77727 1.93529 1.44611 1.82420 1.74085 1.93385 1.66560 1.64334 1.75600 1.29984 1.07931 1.06672 1.24837 1.18344 0.96582 0.87563 0.96465 1.20649 0.92137 1.42198 1.04000 0.93797 1.25400 0.99965 0.93606 0.95551 1.69987 1.19945 1.34914 1.27141 0.86110 0.79379 0.79372 0.80094 1.20616 1.19448 1.18881 1.22432 0.98780 1.03280 0.93201 1.23212 0.95349 0.98916 1.05436 0.90575 0.88296 0.91879 0.84910 0.91361 0.87894 0.92333 0.89988 0.90519 0.92802 0.89238 0.90671 0.92363 0.85381 0.86466 0.92455 0.89579 0.91726 0.90259 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.74 10.66 127.77 1.36 3.10 16 2 N -1.01 -31.76 3.00 -539.13 -1.62 -33.38 16 3 C 0.13 3.35 5.09 86.38 0.44 3.79 16 4 C 0.06 1.57 2.91 30.63 0.09 1.66 16 5 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 6 C -0.15 -2.95 5.42 30.68 0.17 -2.79 16 7 C -0.12 -2.02 6.03 30.71 0.19 -1.83 16 8 C -0.15 -3.40 6.14 30.69 0.19 -3.21 16 9 C 0.05 1.34 6.84 72.02 0.49 1.83 16 10 O -0.39 -14.06 8.06 -128.88 -1.04 -15.10 16 11 S 2.63 117.52 4.47 -56.49 -0.25 117.27 16 12 O -0.96 -50.58 14.09 -119.54 -1.68 -52.27 16 13 O -1.01 -49.70 16.57 -127.65 -2.12 -51.82 16 14 C -0.56 -24.33 6.28 71.98 0.45 -23.88 16 15 C 0.01 0.62 1.69 -52.93 -0.09 0.53 16 16 C -0.55 -32.04 6.97 25.60 0.18 -31.86 16 17 H 0.04 2.67 7.82 -2.91 -0.02 2.65 16 18 C 0.06 3.43 5.38 84.65 0.46 3.88 16 19 N -0.88 -50.75 12.81 21.45 0.27 -50.48 16 20 Si 0.93 46.57 29.55 68.60 2.03 48.60 16 21 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 22 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 24 C -0.14 -6.41 9.31 30.60 0.28 -6.13 16 25 C -0.19 -8.44 9.88 30.59 0.30 -8.14 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.10 1.62 8.07 -2.38 -0.02 1.61 16 28 H 0.06 1.72 6.91 -2.39 -0.02 1.70 16 29 H 0.13 2.20 8.11 -2.39 -0.02 2.18 16 30 H 0.07 2.14 7.61 -2.39 -0.02 2.13 16 31 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 39 H 0.13 4.43 7.95 -2.39 -0.02 4.41 16 40 H 0.12 5.16 8.14 -2.39 -0.02 5.14 16 41 H 0.27 14.55 8.32 -92.71 -0.77 13.78 16 42 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 43 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.08 3.51 8.14 -2.39 -0.02 3.50 16 45 H 0.10 3.72 8.09 -2.39 -0.02 3.70 16 Total: -1.00 -77.34 369.34 1.04 -76.29 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: 0.94 Total: 23.92 kcal Atomic # 6 Polarization: -67.54 SS G_CDS: 4.51 Total: -63.04 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -1.34 Total: -83.85 kcal Atomic # 8 Polarization: -114.35 SS G_CDS: -4.84 Total: -119.19 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Atomic # 16 Polarization: 117.52 SS G_CDS: -0.25 Total: 117.27 kcal Total: -77.34 1.04 -76.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333268293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.531 kcal (2) G-P(sol) polarization free energy of solvation -77.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds