Wall clock time and date at job start Tue Mar 31 2020 11:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 119.99877 * 2 1 4 4 C 1.52999 * 109.47268 * 274.99865 * 3 2 1 5 5 H 1.09002 * 109.48122 * 305.00135 * 4 3 2 6 6 C 1.53094 * 109.48314 * 184.97842 * 4 3 2 7 7 C 1.53186 * 109.16154 * 182.41957 * 6 4 3 8 8 C 1.53173 * 109.04495 * 56.96261 * 7 6 4 9 9 C 1.53093 * 109.16515 * 303.02526 * 8 7 6 10 10 O 1.42900 * 109.41306 * 57.61024 * 9 8 7 11 11 S 1.65598 * 120.00027 * 179.97438 * 2 1 3 12 12 O 1.42104 * 104.27721 * 153.92650 * 11 2 1 13 13 O 1.42102 * 104.27547 * 26.07253 * 11 2 1 14 14 C 1.81402 * 104.44974 * 270.00197 * 11 2 1 15 15 C 1.52997 * 109.46907 * 186.15188 * 14 11 2 16 16 C 1.50706 * 115.55221 * 299.71893 * 15 14 11 17 17 H 1.07989 * 120.00397 * 95.16503 * 16 15 14 18 18 C 1.37877 * 119.99362 * 275.16836 * 16 15 14 19 19 N 1.31513 * 120.00732 * 7.14341 * 18 16 15 20 20 Si 1.86804 * 119.99636 * 187.14240 * 18 16 15 21 21 H 1.48495 * 109.47212 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47216 * 300.00012 * 20 18 16 23 23 H 1.48500 * 109.47139 * 59.99792 * 20 18 16 24 24 C 1.53002 * 117.50144 * 85.38619 * 15 14 11 25 25 C 1.53001 * 117.50075 * 154.04670 * 15 14 11 26 26 H 1.09004 * 109.47083 * 270.00279 * 1 2 3 27 27 H 1.09004 * 109.47139 * 30.00290 * 1 2 3 28 28 H 1.08999 * 109.47238 * 149.99829 * 1 2 3 29 29 H 1.08999 * 109.47474 * 34.99809 * 3 2 1 30 30 H 1.08999 * 109.47181 * 155.00176 * 3 2 1 31 31 H 1.09002 * 109.52091 * 302.31165 * 6 4 3 32 32 H 1.08997 * 109.52016 * 62.50023 * 6 4 3 33 33 H 1.09000 * 109.53244 * 297.09756 * 7 6 4 34 34 H 1.08995 * 109.61459 * 176.87807 * 7 6 4 35 35 H 1.08998 * 109.52141 * 183.11690 * 8 7 6 36 36 H 1.09002 * 109.51994 * 62.92941 * 8 7 6 37 37 H 1.08992 * 109.47903 * 297.62311 * 9 8 7 38 38 H 1.09004 * 109.47950 * 177.58925 * 9 8 7 39 39 H 1.08999 * 109.46948 * 66.15003 * 14 11 2 40 40 H 1.08999 * 109.47060 * 306.14697 * 14 11 2 41 41 H 0.97004 * 119.99381 * 355.43634 * 19 18 16 42 42 H 1.08996 * 117.49874 * 214.99985 * 24 15 14 43 43 H 1.08999 * 117.49547 * 0.02562 * 24 15 14 44 44 H 1.09001 * 117.49598 * 359.97438 * 25 15 14 45 45 H 1.09002 * 117.50184 * 144.96997 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 1 2.8119 1.0012 -2.0475 6 6 3.2144 3.0324 -1.4500 7 6 3.3061 3.5655 -2.8831 8 6 1.8922 3.8308 -3.4092 9 6 1.0727 2.5407 -3.3205 10 8 1.0531 2.0825 -1.9671 11 16 2.2930 -1.4341 0.0006 12 8 3.5395 -1.1194 -0.6048 13 8 1.3969 -2.3564 -0.6042 14 6 2.5193 -1.8254 1.7574 15 6 3.4112 -3.0610 1.8939 16 6 2.8844 -4.3173 1.2495 17 1 3.1974 -4.5842 0.2510 18 6 2.0027 -5.1260 1.9349 19 7 1.5124 -4.7335 3.0903 20 14 1.5047 -6.7793 1.2222 21 1 0.5540 -7.4500 2.1449 22 1 0.8526 -6.5739 -0.0961 23 1 2.7110 -7.6281 1.0507 24 6 4.9257 -2.8437 1.8841 25 6 4.2136 -3.2137 3.1877 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6501 2.0043 0.5894 30 1 3.1857 1.1177 0.4343 31 1 2.7675 3.7909 -0.8072 32 1 4.2129 2.7884 -1.0873 33 1 3.7979 2.8268 -3.5160 34 1 3.8786 4.4930 -2.8926 35 1 1.9453 4.1580 -4.4475 36 1 1.4185 4.6053 -2.8060 37 1 1.5243 1.7788 -3.9558 38 1 0.0530 2.7342 -3.6536 39 1 1.5494 -2.0252 2.2130 40 1 2.9897 -0.9804 2.2602 41 1 1.8208 -3.9062 3.4922 42 1 5.5409 -3.6094 1.4117 43 1 5.2866 -1.8204 1.7809 44 1 4.1063 -2.4336 3.9414 45 1 4.3600 -4.2227 3.5730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333268295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:54 Heat of formation + Delta-G solvation = -106.804781 kcal Electronic energy + Delta-G solvation = -26370.684219 eV Core-core repulsion = 22708.743952 eV Total energy + Delta-G solvation = -3661.940266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.55471 -37.07176 -36.35616 -35.98982 -35.05123 -33.72703 -31.97427 -31.72410 -28.29596 -27.75395 -25.24472 -24.88440 -24.07313 -22.17597 -21.40951 -20.38846 -19.78474 -18.29682 -17.19737 -16.88509 -16.26894 -16.10676 -15.77168 -15.39695 -14.74527 -14.69125 -14.31763 -13.94944 -13.73477 -13.71310 -13.22788 -13.17879 -12.79825 -12.61635 -12.50252 -12.30434 -11.95859 -11.85418 -11.48513 -11.28043 -11.26504 -11.16377 -11.06435 -10.93117 -10.87948 -10.76068 -10.62104 -10.46752 -10.33013 -10.06919 -9.69614 -9.51269 -8.81247 -8.64818 -8.47331 -8.26748 -6.45216 -4.23879 0.98982 3.31125 3.45943 3.50858 3.67243 3.69062 4.49076 4.50378 4.61601 4.63887 4.68768 4.77273 4.85847 4.98469 5.00299 5.10188 5.18693 5.23045 5.34707 5.45529 5.50360 5.54458 5.60159 5.64039 5.72952 5.75378 5.81217 5.83828 5.90455 5.93341 6.05703 6.13587 6.15992 6.21826 6.28919 6.35667 6.52861 6.74454 6.86798 7.02804 7.16961 7.20195 8.04051 8.33985 8.77460 9.55423 10.94793 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.003975 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.498882 B = 7042.686543 C = 7528.115373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -1.009 6.009 3 C 0.136 3.864 4 C 0.071 3.929 5 H 0.069 0.931 6 C -0.150 4.150 7 C -0.123 4.123 8 C -0.155 4.155 9 C 0.058 3.942 10 O -0.372 6.372 11 S 2.615 3.385 12 O -0.971 6.971 13 O -0.941 6.941 14 C -0.569 4.569 15 C 0.022 3.978 16 C -0.593 4.593 17 H 0.061 0.939 18 C 0.041 3.959 19 N -0.897 5.897 20 Si 1.062 2.938 21 H -0.281 1.281 22 H -0.280 1.280 23 H -0.285 1.285 24 C -0.190 4.190 25 C -0.165 4.165 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.098 0.902 41 H 0.274 0.726 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.350 17.315 -7.042 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C 0.010 3.990 4 C 0.011 3.989 5 H 0.087 0.913 6 C -0.188 4.188 7 C -0.160 4.160 8 C -0.193 4.193 9 C -0.019 4.019 10 O -0.291 6.291 11 S 2.711 3.289 12 O -0.961 6.961 13 O -0.931 6.931 14 C -0.701 4.701 15 C 0.020 3.980 16 C -0.630 4.630 17 H 0.080 0.920 18 C -0.167 4.167 19 N -0.530 5.530 20 Si 0.889 3.111 21 H -0.206 1.206 22 H -0.206 1.206 23 H -0.212 1.212 24 C -0.228 4.228 25 C -0.204 4.204 26 H 0.065 0.935 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.595 15.534 -7.454 17.240 hybrid contribution 1.172 1.736 0.362 2.126 sum 0.577 17.270 -7.092 18.678 Atomic orbital electron populations 1.21545 0.78598 1.04460 1.01252 1.57739 1.15447 1.21010 1.90266 1.21209 0.97075 0.86138 0.94611 1.22705 0.84247 0.95738 0.96205 0.91271 1.22163 1.00924 0.98124 0.97596 1.21574 0.96738 1.01337 0.96364 1.22188 0.96510 0.98971 1.01634 1.22551 1.00677 0.94468 0.84169 1.87918 1.28245 1.85745 1.27227 1.04997 0.73581 0.71978 0.78307 1.93480 1.44592 1.83335 1.74708 1.93532 1.64357 1.61103 1.74135 1.30163 1.09895 1.06316 1.23716 1.18558 0.87471 0.92295 0.99710 1.21377 1.31940 1.06296 1.03370 0.92041 1.25812 0.92530 1.03030 0.95293 1.70773 1.39093 1.25291 1.17836 0.83648 0.76616 0.74743 0.76061 1.20618 1.20623 1.21161 1.23039 0.96815 1.00398 1.02503 1.22793 1.06054 1.01066 0.90503 0.93497 0.90096 0.90058 0.89975 0.88976 0.90963 0.90423 0.91677 0.91513 0.91152 0.91171 0.93287 0.89039 0.85707 0.88353 0.91433 0.89285 0.90693 0.91225 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 10.46 59.85 0.63 1.90 16 2 N -1.01 -16.36 3.10 -121.76 -0.38 -16.74 16 3 C 0.14 1.81 4.97 -4.04 -0.02 1.79 16 4 C 0.07 0.92 2.89 -26.68 -0.08 0.85 16 5 H 0.07 1.06 7.91 -51.93 -0.41 0.65 16 6 C -0.15 -1.52 5.42 -26.59 -0.14 -1.66 16 7 C -0.12 -1.10 6.03 -26.55 -0.16 -1.26 16 8 C -0.16 -1.32 6.14 -26.59 -0.16 -1.48 16 9 C 0.06 0.60 6.84 37.21 0.25 0.86 16 10 O -0.37 -4.84 8.78 -35.23 -0.31 -5.15 16 11 S 2.61 54.66 5.01 -107.50 -0.54 54.12 16 12 O -0.97 -21.27 16.76 -57.54 -0.96 -22.23 16 13 O -0.94 -23.29 16.07 -57.54 -0.92 -24.22 16 14 C -0.57 -12.02 5.98 37.16 0.22 -11.79 16 15 C 0.02 0.54 0.95 -155.66 -0.15 0.39 16 16 C -0.59 -16.57 7.88 -34.44 -0.27 -16.84 16 17 H 0.06 1.77 7.82 -52.49 -0.41 1.36 16 18 C 0.04 1.15 5.39 -17.82 -0.10 1.05 16 19 N -0.90 -25.93 13.57 55.43 0.75 -25.18 16 20 Si 1.06 25.47 29.91 -169.99 -5.08 20.38 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.19 -4.15 9.95 -26.69 -0.27 -4.42 16 25 C -0.17 -3.70 8.74 -26.69 -0.23 -3.94 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.05 6.67 -51.93 -0.35 0.71 16 28 H 0.08 1.32 6.91 -51.93 -0.36 0.96 16 29 H 0.08 0.90 8.11 -51.93 -0.42 0.48 16 30 H 0.09 1.14 7.61 -51.93 -0.40 0.75 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.12 2.73 7.79 -51.92 -0.40 2.32 16 40 H 0.10 1.72 8.11 -51.92 -0.42 1.30 16 41 H 0.27 7.74 6.17 -40.82 -0.25 7.49 16 42 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 43 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -33.53 369.11 -10.07 -43.61 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.71 Total: 4.40 kcal Atomic # 6 Polarization: -34.08 SS G_CDS: -0.48 Total: -34.56 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.37 Total: -41.92 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -2.20 Total: -51.60 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Atomic # 16 Polarization: 54.66 SS G_CDS: -0.54 Total: 54.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.53 -10.07 -43.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333268295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.198 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds