Wall clock time and date at job start Tue Mar 31 2020 11:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46497 * 119.99877 * 2 1 4 4 C 1.52999 * 109.47268 * 274.99865 * 3 2 1 5 5 H 1.09002 * 109.48122 * 305.00135 * 4 3 2 6 6 C 1.53094 * 109.48314 * 184.97842 * 4 3 2 7 7 C 1.53186 * 109.16154 * 182.41957 * 6 4 3 8 8 C 1.53173 * 109.04495 * 56.96261 * 7 6 4 9 9 C 1.53093 * 109.16515 * 303.02526 * 8 7 6 10 10 O 1.42900 * 109.41306 * 57.61024 * 9 8 7 11 11 S 1.65598 * 120.00027 * 179.97438 * 2 1 3 12 12 O 1.42104 * 104.27721 * 153.92650 * 11 2 1 13 13 O 1.42102 * 104.27547 * 26.07253 * 11 2 1 14 14 C 1.81402 * 104.44974 * 270.00197 * 11 2 1 15 15 C 1.52997 * 109.46907 * 186.15188 * 14 11 2 16 16 C 1.50706 * 115.55221 * 299.71893 * 15 14 11 17 17 H 1.07989 * 120.00397 * 95.16503 * 16 15 14 18 18 C 1.37877 * 119.99362 * 275.16836 * 16 15 14 19 19 N 1.31513 * 120.00732 * 7.14341 * 18 16 15 20 20 Si 1.86804 * 119.99636 * 187.14240 * 18 16 15 21 21 H 1.48495 * 109.47212 * 180.02562 * 20 18 16 22 22 H 1.48496 * 109.47216 * 300.00012 * 20 18 16 23 23 H 1.48500 * 109.47139 * 59.99792 * 20 18 16 24 24 C 1.53002 * 117.50144 * 85.38619 * 15 14 11 25 25 C 1.53001 * 117.50075 * 154.04670 * 15 14 11 26 26 H 1.09004 * 109.47083 * 270.00279 * 1 2 3 27 27 H 1.09004 * 109.47139 * 30.00290 * 1 2 3 28 28 H 1.08999 * 109.47238 * 149.99829 * 1 2 3 29 29 H 1.08999 * 109.47474 * 34.99809 * 3 2 1 30 30 H 1.08999 * 109.47181 * 155.00176 * 3 2 1 31 31 H 1.09002 * 109.52091 * 302.31165 * 6 4 3 32 32 H 1.08997 * 109.52016 * 62.50023 * 6 4 3 33 33 H 1.09000 * 109.53244 * 297.09756 * 7 6 4 34 34 H 1.08995 * 109.61459 * 176.87807 * 7 6 4 35 35 H 1.08998 * 109.52141 * 183.11690 * 8 7 6 36 36 H 1.09002 * 109.51994 * 62.92941 * 8 7 6 37 37 H 1.08992 * 109.47903 * 297.62311 * 9 8 7 38 38 H 1.09004 * 109.47950 * 177.58925 * 9 8 7 39 39 H 1.08999 * 109.46948 * 66.15003 * 14 11 2 40 40 H 1.08999 * 109.47060 * 306.14697 * 14 11 2 41 41 H 0.97004 * 119.99381 * 355.43634 * 19 18 16 42 42 H 1.08996 * 117.49874 * 214.99985 * 24 15 14 43 43 H 1.08999 * 117.49547 * 0.02562 * 24 15 14 44 44 H 1.09001 * 117.49598 * 359.97438 * 25 15 14 45 45 H 1.09002 * 117.50184 * 144.96997 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 1 2.8119 1.0012 -2.0475 6 6 3.2144 3.0324 -1.4500 7 6 3.3061 3.5655 -2.8831 8 6 1.8922 3.8308 -3.4092 9 6 1.0727 2.5407 -3.3205 10 8 1.0531 2.0825 -1.9671 11 16 2.2930 -1.4341 0.0006 12 8 3.5395 -1.1194 -0.6048 13 8 1.3969 -2.3564 -0.6042 14 6 2.5193 -1.8254 1.7574 15 6 3.4112 -3.0610 1.8939 16 6 2.8844 -4.3173 1.2495 17 1 3.1974 -4.5842 0.2510 18 6 2.0027 -5.1260 1.9349 19 7 1.5124 -4.7335 3.0903 20 14 1.5047 -6.7793 1.2222 21 1 0.5540 -7.4500 2.1449 22 1 0.8526 -6.5739 -0.0961 23 1 2.7110 -7.6281 1.0507 24 6 4.9257 -2.8437 1.8841 25 6 4.2136 -3.2137 3.1877 26 1 -0.3633 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8899 -0.5138 29 1 1.6501 2.0043 0.5894 30 1 3.1857 1.1177 0.4343 31 1 2.7675 3.7909 -0.8072 32 1 4.2129 2.7884 -1.0873 33 1 3.7979 2.8268 -3.5160 34 1 3.8786 4.4930 -2.8926 35 1 1.9453 4.1580 -4.4475 36 1 1.4185 4.6053 -2.8060 37 1 1.5243 1.7788 -3.9558 38 1 0.0530 2.7342 -3.6536 39 1 1.5494 -2.0252 2.2130 40 1 2.9897 -0.9804 2.2602 41 1 1.8208 -3.9062 3.4922 42 1 5.5409 -3.6094 1.4117 43 1 5.2866 -1.8204 1.7809 44 1 4.1063 -2.4336 3.9414 45 1 4.3600 -4.2227 3.5730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333268295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:53 Heat of formation + Delta-G solvation = -129.023644 kcal Electronic energy + Delta-G solvation = -26371.647701 eV Core-core repulsion = 22708.743952 eV Total energy + Delta-G solvation = -3662.903748 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44587 -38.90470 -38.07641 -37.22459 -36.74598 -34.52785 -34.06050 -32.65814 -29.99535 -28.74478 -27.10536 -26.21266 -24.94884 -23.20448 -23.13286 -21.70288 -21.16320 -19.84971 -18.81476 -18.61996 -17.34848 -17.33769 -17.01736 -16.82979 -16.03319 -15.73639 -15.65133 -15.50742 -15.31470 -15.04270 -14.72460 -14.56423 -14.12265 -13.86930 -13.66841 -13.58427 -13.33823 -13.17948 -13.11736 -12.97605 -12.68896 -12.56540 -12.46104 -12.36819 -12.17073 -12.07728 -11.96507 -11.92561 -11.74563 -11.50160 -11.28777 -10.60786 -10.55009 -10.44819 -10.30028 -9.80935 -8.63608 -6.41395 -0.63089 1.50760 1.58013 1.77123 1.87230 2.52959 2.78970 2.91708 3.11103 3.15955 3.30097 3.62171 3.77180 3.88292 3.93833 3.96632 4.08358 4.11233 4.24883 4.32739 4.34307 4.38407 4.49206 4.53012 4.60757 4.66499 4.67839 4.80206 4.80741 4.89242 4.95931 4.98928 4.99982 5.05202 5.11111 5.13714 5.19292 5.23550 5.38573 5.40682 5.65031 5.99572 6.14110 6.29546 6.63044 7.41430 8.78443 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.003975 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.498882 B = 7042.686543 C = 7528.115373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.001 6.001 3 C 0.125 3.875 4 C 0.068 3.932 5 H 0.035 0.965 6 C -0.146 4.146 7 C -0.126 4.126 8 C -0.149 4.149 9 C 0.048 3.952 10 O -0.387 6.387 11 S 2.623 3.377 12 O -0.987 6.987 13 O -0.991 6.991 14 C -0.563 4.563 15 C -0.016 4.016 16 C -0.606 4.606 17 H 0.038 0.962 18 C -0.001 4.001 19 N -0.916 5.916 20 Si 1.091 2.909 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.267 1.267 24 C -0.178 4.178 25 C -0.157 4.157 26 H 0.067 0.933 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.139 0.861 41 H 0.271 0.729 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.658 19.881 -6.571 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.839 5.839 3 C 0.000 4.000 4 C 0.008 3.992 5 H 0.054 0.946 6 C -0.184 4.184 7 C -0.163 4.163 8 C -0.186 4.186 9 C -0.028 4.028 10 O -0.306 6.306 11 S 2.720 3.280 12 O -0.977 6.977 13 O -0.981 6.981 14 C -0.695 4.695 15 C -0.018 4.018 16 C -0.644 4.644 17 H 0.056 0.944 18 C -0.204 4.204 19 N -0.551 5.551 20 Si 0.914 3.086 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.192 1.192 24 C -0.215 4.215 25 C -0.196 4.196 26 H 0.086 0.914 27 H 0.119 0.881 28 H 0.076 0.924 29 H 0.132 0.868 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.125 0.875 39 H 0.132 0.868 40 H 0.157 0.843 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.116 0.884 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.264 18.103 -6.990 19.408 hybrid contribution 1.086 1.019 0.157 1.498 sum 0.822 19.123 -6.834 20.324 Atomic orbital electron populations 1.21685 0.77578 1.04282 1.02575 1.57361 1.15933 1.20566 1.90021 1.21612 0.97814 0.85100 0.95506 1.22662 0.84757 0.96375 0.95404 0.94647 1.22151 1.00551 0.96961 0.98747 1.21624 0.97307 1.01871 0.95504 1.22147 0.95746 0.97875 1.02854 1.22769 1.02030 0.95156 0.82868 1.87873 1.28278 1.86042 1.28434 1.04443 0.73020 0.72388 0.78130 1.93445 1.45429 1.83705 1.75113 1.93466 1.65558 1.63689 1.75402 1.30026 1.09040 1.06346 1.24123 1.18666 0.89336 0.92412 1.01392 1.21577 1.31982 1.08232 1.02570 0.94395 1.26840 0.92708 1.05465 0.95372 1.70845 1.40077 1.25632 1.18506 0.83283 0.77277 0.72509 0.75534 1.19849 1.20758 1.19218 1.23116 0.94994 1.01893 1.01540 1.22761 1.05085 1.00952 0.90785 0.91444 0.88111 0.92353 0.86783 0.87971 0.89280 0.89982 0.92793 0.89543 0.89516 0.90353 0.94563 0.87517 0.86752 0.84270 0.91801 0.90001 0.87684 0.88378 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 10.46 127.77 1.34 3.71 16 2 N -1.00 -31.31 3.10 -539.13 -1.67 -32.99 16 3 C 0.12 3.02 4.97 86.38 0.43 3.45 16 4 C 0.07 1.68 2.89 30.63 0.09 1.77 16 5 H 0.04 1.11 7.91 -2.39 -0.02 1.09 16 6 C -0.15 -2.60 5.42 30.69 0.17 -2.43 16 7 C -0.13 -1.98 6.03 30.71 0.19 -1.79 16 8 C -0.15 -2.16 6.14 30.68 0.19 -1.98 16 9 C 0.05 0.94 6.84 72.01 0.49 1.43 16 10 O -0.39 -9.50 8.78 -148.98 -1.31 -10.80 16 11 S 2.62 109.76 5.01 -56.49 -0.28 109.48 16 12 O -0.99 -43.17 16.76 -127.65 -2.14 -45.31 16 13 O -0.99 -50.76 16.07 -127.65 -2.05 -52.82 16 14 C -0.56 -23.17 5.98 71.98 0.43 -22.74 16 15 C -0.02 -0.77 0.95 -52.93 -0.05 -0.82 16 16 C -0.61 -34.55 7.88 25.60 0.20 -34.34 16 17 H 0.04 2.27 7.82 -2.92 -0.02 2.24 16 18 C 0.00 -0.06 5.39 84.65 0.46 0.39 16 19 N -0.92 -53.40 13.57 21.45 0.29 -53.11 16 20 Si 1.09 51.92 29.91 68.60 2.05 53.97 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 C -0.18 -7.52 9.95 30.62 0.30 -7.22 16 25 C -0.16 -6.83 8.74 30.62 0.27 -6.56 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.10 2.45 6.67 -2.39 -0.02 2.43 16 28 H 0.06 1.93 6.91 -2.39 -0.02 1.91 16 29 H 0.11 2.07 8.11 -2.39 -0.02 2.05 16 30 H 0.10 2.26 7.61 -2.39 -0.02 2.24 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.11 4.95 7.79 -2.39 -0.02 4.93 16 40 H 0.14 4.43 8.11 -2.39 -0.02 4.41 16 41 H 0.27 15.37 6.17 -92.71 -0.57 14.80 16 42 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 43 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 44 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 45 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -73.96 369.11 0.53 -73.42 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 1.15 Total: 25.28 kcal Atomic # 6 Polarization: -71.62 SS G_CDS: 4.50 Total: -67.13 kcal Atomic # 7 Polarization: -84.72 SS G_CDS: -1.38 Total: -86.10 kcal Atomic # 8 Polarization: -103.43 SS G_CDS: -5.50 Total: -108.93 kcal Atomic # 14 Polarization: 51.92 SS G_CDS: 2.05 Total: 53.97 kcal Atomic # 16 Polarization: 109.76 SS G_CDS: -0.28 Total: 109.48 kcal Total: -73.96 0.53 -73.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333268295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.599 kcal (2) G-P(sol) polarization free energy of solvation -73.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds