Wall clock time and date at job start Tue Mar 31 2020 11:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45755 * 117.94542 * 2 1 4 4 C 1.52921 * 110.48806 * 160.92363 * 3 2 1 5 5 C 1.53343 * 108.67324 * 50.74925 * 4 3 2 6 6 C 1.53063 * 108.42781 * 292.46930 * 5 4 3 7 7 H 1.08997 * 109.40245 * 288.77170 * 6 5 4 8 8 N 1.46510 * 109.40145 * 168.94073 * 6 5 4 9 9 C 1.34780 * 119.99695 * 155.00171 * 8 6 5 10 10 O 1.21588 * 120.00051 * 359.97438 * 9 8 6 11 11 N 1.34772 * 119.99699 * 180.02562 * 9 8 6 12 12 C 1.39954 * 119.99884 * 174.83989 * 11 9 8 13 13 C 1.39287 * 119.94595 * 145.59540 * 12 11 9 14 14 C 1.38492 * 120.42754 * 180.02562 * 13 12 11 15 15 C 1.37678 * 120.32387 * 359.97410 * 14 13 12 16 16 C 1.40749 * 119.88289 * 0.02562 * 15 14 13 17 17 C 1.41404 * 120.20763 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00547 * 25.25651 * 17 16 15 19 19 C 1.39935 * 119.99428 * 205.24789 * 17 16 15 20 20 N 1.30828 * 120.00296 * 16.72103 * 19 17 16 21 21 Si 1.86800 * 119.99601 * 196.71470 * 19 17 16 22 22 H 1.48499 * 109.47397 * 90.00610 * 21 19 17 23 23 H 1.48505 * 109.47056 * 210.00183 * 21 19 17 24 24 H 1.48495 * 109.47758 * 330.00023 * 21 19 17 25 25 C 1.38235 * 119.94652 * 325.31613 * 12 11 9 26 26 C 1.33349 * 117.94661 * 179.73191 * 2 1 3 27 27 O 1.21281 * 118.24832 * 2.23023 * 26 2 1 28 28 H 1.08997 * 109.46841 * 90.00052 * 1 2 3 29 29 H 1.09002 * 109.46842 * 330.00095 * 1 2 3 30 30 H 1.09005 * 109.46976 * 210.00483 * 1 2 3 31 31 H 1.08994 * 109.29962 * 281.23609 * 3 2 1 32 32 H 1.08995 * 109.30239 * 40.61080 * 3 2 1 33 33 H 1.09003 * 109.60356 * 170.50759 * 4 3 2 34 34 H 1.09001 * 109.60113 * 290.99841 * 4 3 2 35 35 H 1.09006 * 109.67463 * 52.20714 * 5 4 3 36 36 H 1.09002 * 109.67656 * 172.69843 * 5 4 3 37 37 H 0.96993 * 119.99829 * 335.00619 * 8 6 5 38 38 H 0.96994 * 120.00269 * 354.83911 * 11 9 8 39 39 H 1.07998 * 119.78861 * 359.97422 * 13 12 11 40 40 H 1.08001 * 119.83949 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.06211 * 180.02562 * 15 14 13 42 42 H 0.96998 * 120.00026 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.16085 * 0.03032 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1260 0.4682 5 6 4.2493 -0.0013 -0.3395 6 6 3.5839 -1.3239 0.0487 7 1 3.8881 -1.5996 1.0584 8 7 3.9995 -2.3712 -0.8878 9 6 3.9811 -3.6634 -0.5051 10 8 3.6200 -3.9599 0.6174 11 7 4.3640 -4.6267 -1.3664 12 6 4.4484 -5.9560 -0.9370 13 6 4.1316 -6.9913 -1.8134 14 6 4.2112 -8.3103 -1.3989 15 6 4.6052 -8.6128 -0.1148 16 6 4.9285 -7.5772 0.7819 17 6 5.3334 -7.8801 2.1024 18 1 5.7846 -8.8361 2.3230 19 6 5.1497 -6.9408 3.1233 20 7 4.3280 -5.9378 2.9492 21 14 6.0775 -7.1194 4.7347 22 1 7.3721 -6.3976 4.6431 23 1 5.2675 -6.5446 5.8386 24 1 6.3307 -8.5577 5.0035 25 6 4.8516 -6.2398 0.3544 26 6 2.0900 -1.1780 0.0055 27 8 1.4159 -2.1855 -0.0313 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 2.1398 1.6997 -1.0090 32 1 1.6271 1.9718 0.6696 33 1 4.1384 2.0565 0.3042 34 1 3.6101 0.8726 1.5282 35 1 4.1088 0.1813 -1.4050 36 1 5.3144 -0.0451 -0.1122 37 1 4.2880 -2.1345 -1.7831 38 1 4.5810 -4.3987 -2.2839 39 1 3.8211 -6.7639 -2.8225 40 1 3.9629 -9.1055 -2.0862 41 1 4.6662 -9.6429 0.2038 42 1 4.2003 -5.2869 3.6570 43 1 5.1013 -5.4379 1.0334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334981264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:39 Heat of formation + Delta-G solvation = -27.115007 kcal Electronic energy + Delta-G solvation = -26837.641929 eV Core-core repulsion = 23076.006070 eV Total energy + Delta-G solvation = -3761.635858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.74830 -39.27902 -37.15398 -36.52761 -35.10647 -33.98696 -33.00965 -32.40913 -29.44721 -29.10662 -27.56762 -27.22242 -25.10875 -24.08564 -22.54010 -21.54409 -20.68227 -19.71330 -18.92339 -17.86331 -17.32939 -16.75890 -16.55945 -16.24929 -15.50089 -14.99178 -14.64790 -14.39231 -14.32479 -14.20127 -13.83081 -13.56131 -13.48012 -12.89688 -12.76626 -12.64119 -12.41236 -12.17462 -11.97115 -11.67463 -11.48223 -11.45442 -11.16922 -11.05987 -10.98443 -10.62277 -10.41925 -9.96562 -9.83390 -9.57464 -9.18745 -8.90355 -8.83273 -8.78754 -8.57232 -7.20971 -6.74984 -6.39812 -4.14672 2.59033 2.87119 2.91717 3.11526 3.19565 3.23022 3.34755 3.37368 4.05030 4.10315 4.39718 4.43079 4.49720 4.52967 4.82914 4.87381 5.02704 5.12695 5.17812 5.22517 5.41971 5.47483 5.54768 5.67166 5.78738 5.85151 5.89713 6.31066 6.33814 6.59681 6.66207 6.88330 6.98964 7.18596 7.29182 7.39977 7.43352 7.56583 7.89734 8.02933 8.09998 8.26207 8.29371 8.50212 8.69998 8.83814 9.10389 9.16692 9.42273 10.43907 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.003993 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.526607 B = 7010.771195 C = 8129.921851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.115 3.885 4 C -0.133 4.133 5 C -0.129 4.129 6 C 0.162 3.838 7 H 0.120 0.880 8 N -0.739 5.739 9 C 0.691 3.309 10 O -0.516 6.516 11 N -0.684 5.684 12 C 0.164 3.836 13 C -0.269 4.269 14 C -0.080 4.080 15 C -0.242 4.242 16 C 0.121 3.879 17 C -0.467 4.467 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.755 5.755 21 Si 0.900 3.100 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.264 1.264 25 C -0.157 4.157 26 C 0.493 3.507 27 O -0.512 6.512 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.391 0.609 38 H 0.389 0.611 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.279 0.721 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.710 19.627 -6.644 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.352 5.352 3 C -0.009 4.009 4 C -0.171 4.171 5 C -0.167 4.167 6 C 0.052 3.948 7 H 0.137 0.863 8 N -0.397 5.397 9 C 0.391 3.609 10 O -0.386 6.386 11 N -0.331 5.331 12 C 0.071 3.929 13 C -0.291 4.291 14 C -0.099 4.099 15 C -0.262 4.262 16 C 0.118 3.882 17 C -0.496 4.496 18 H 0.094 0.906 19 C -0.149 4.149 20 N -0.377 5.377 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.188 1.188 25 C -0.179 4.179 26 C 0.279 3.721 27 O -0.385 6.385 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.224 0.776 38 H 0.221 0.779 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.511 18.998 -5.434 19.818 hybrid contribution 0.373 0.393 -0.236 0.591 sum -1.137 19.390 -5.670 20.234 Atomic orbital electron populations 1.21657 0.79876 1.03111 1.01738 1.47366 1.07234 1.05891 1.74696 1.21396 0.93215 0.84845 1.01397 1.21854 0.94644 0.99514 1.01131 1.21947 1.01136 0.92619 1.00987 1.20473 0.89521 0.87694 0.97151 0.86262 1.44879 1.73409 1.04807 1.16573 1.16001 0.79204 0.80143 0.85580 1.91166 1.49301 1.79963 1.18199 1.42492 1.71530 1.06271 1.12786 1.17369 1.00295 0.80019 0.95180 1.19977 1.17947 0.92402 0.98761 1.20253 0.99765 0.94295 0.95561 1.20947 1.12456 0.97723 0.95059 1.17476 0.87675 0.90631 0.92459 1.19500 1.36457 1.01447 0.92239 0.90599 1.25963 0.93899 0.94622 1.00428 1.69948 1.24579 1.09816 1.33402 0.86452 0.80195 0.79520 0.81317 1.19556 1.20497 1.18787 1.21358 1.05078 0.97923 0.93536 1.20896 0.91668 0.82786 0.76781 1.90810 1.65598 1.35362 1.46741 0.92978 0.91574 0.90245 0.91874 0.90734 0.89170 0.90360 0.90692 0.89604 0.77559 0.77858 0.89598 0.89314 0.89154 0.90940 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.23 59.85 0.61 1.44 16 2 N -0.62 -7.05 3.21 -182.86 -0.59 -7.64 16 3 C 0.11 0.79 6.39 -4.48 -0.03 0.76 16 4 C -0.13 -0.83 6.02 -26.59 -0.16 -0.99 16 5 C -0.13 -1.04 5.51 -26.52 -0.15 -1.18 16 6 C 0.16 2.23 2.69 -69.30 -0.19 2.04 16 7 H 0.12 1.93 7.58 -51.93 -0.39 1.54 16 8 N -0.74 -11.28 4.98 -60.03 -0.30 -11.58 16 9 C 0.69 14.73 7.71 -86.92 -0.67 14.06 16 10 O -0.52 -13.78 13.30 3.27 0.04 -13.73 16 11 N -0.68 -14.08 5.34 -14.27 -0.08 -14.16 16 12 C 0.16 4.11 6.25 -83.76 -0.52 3.59 16 13 C -0.27 -6.39 9.97 -39.10 -0.39 -6.78 16 14 C -0.08 -1.92 10.02 -39.69 -0.40 -2.31 16 15 C -0.24 -6.37 9.79 -38.84 -0.38 -6.75 16 16 C 0.12 3.47 5.56 -106.85 -0.59 2.88 16 17 C -0.47 -13.27 9.05 -37.74 -0.34 -13.61 16 18 H 0.08 2.06 7.90 -52.49 -0.41 1.64 16 19 C 0.07 1.94 5.15 -17.34 -0.09 1.85 16 20 N -0.75 -21.67 10.96 55.55 0.61 -21.06 16 21 Si 0.90 19.99 29.59 -169.99 -5.03 14.96 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 25 C -0.16 -4.45 7.28 -38.69 -0.28 -4.74 16 26 C 0.49 7.77 7.20 -11.88 -0.09 7.68 16 27 O -0.51 -11.02 14.95 3.54 0.05 -10.96 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16 30 H 0.08 1.05 7.20 -51.93 -0.37 0.68 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.39 7.92 -51.93 -0.41 -0.02 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.39 4.45 8.60 -40.82 -0.35 4.10 16 38 H 0.39 6.23 8.84 -40.82 -0.36 5.87 16 39 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 42 H 0.28 7.51 8.30 -40.82 -0.34 7.17 16 43 H 0.14 4.06 4.63 -52.49 -0.24 3.82 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -38.10 354.25 -9.50 -47.60 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -5.89 Total: 13.28 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -3.66 Total: -2.05 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.35 Total: -54.44 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.10 Total: -24.70 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.10 -9.50 -47.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334981264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.486 kcal (2) G-P(sol) polarization free energy of solvation -38.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds