Wall clock time and date at job start Tue Mar 31 2020 11:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.45755 * 117.94542 * 2 1 4 4 C 1.52921 * 110.48806 * 160.92363 * 3 2 1 5 5 C 1.53343 * 108.67324 * 50.74925 * 4 3 2 6 6 C 1.53063 * 108.42781 * 292.46930 * 5 4 3 7 7 H 1.08997 * 109.40245 * 288.77170 * 6 5 4 8 8 N 1.46510 * 109.40145 * 168.94073 * 6 5 4 9 9 C 1.34780 * 119.99695 * 155.00171 * 8 6 5 10 10 O 1.21588 * 120.00051 * 359.97438 * 9 8 6 11 11 N 1.34772 * 119.99699 * 180.02562 * 9 8 6 12 12 C 1.39954 * 119.99884 * 174.83989 * 11 9 8 13 13 C 1.39287 * 119.94595 * 145.59540 * 12 11 9 14 14 C 1.38492 * 120.42754 * 180.02562 * 13 12 11 15 15 C 1.37678 * 120.32387 * 359.97410 * 14 13 12 16 16 C 1.40749 * 119.88289 * 0.02562 * 15 14 13 17 17 C 1.41404 * 120.20763 * 179.97438 * 16 15 14 18 18 H 1.07992 * 120.00547 * 25.25651 * 17 16 15 19 19 C 1.39935 * 119.99428 * 205.24789 * 17 16 15 20 20 N 1.30828 * 120.00296 * 16.72103 * 19 17 16 21 21 Si 1.86800 * 119.99601 * 196.71470 * 19 17 16 22 22 H 1.48499 * 109.47397 * 90.00610 * 21 19 17 23 23 H 1.48505 * 109.47056 * 210.00183 * 21 19 17 24 24 H 1.48495 * 109.47758 * 330.00023 * 21 19 17 25 25 C 1.38235 * 119.94652 * 325.31613 * 12 11 9 26 26 C 1.33349 * 117.94661 * 179.73191 * 2 1 3 27 27 O 1.21281 * 118.24832 * 2.23023 * 26 2 1 28 28 H 1.08997 * 109.46841 * 90.00052 * 1 2 3 29 29 H 1.09002 * 109.46842 * 330.00095 * 1 2 3 30 30 H 1.09005 * 109.46976 * 210.00483 * 1 2 3 31 31 H 1.08994 * 109.29962 * 281.23609 * 3 2 1 32 32 H 1.08995 * 109.30239 * 40.61080 * 3 2 1 33 33 H 1.09003 * 109.60356 * 170.50759 * 4 3 2 34 34 H 1.09001 * 109.60113 * 290.99841 * 4 3 2 35 35 H 1.09006 * 109.67463 * 52.20714 * 5 4 3 36 36 H 1.09002 * 109.67656 * 172.69843 * 5 4 3 37 37 H 0.96993 * 119.99829 * 335.00619 * 8 6 5 38 38 H 0.96994 * 120.00269 * 354.83911 * 11 9 8 39 39 H 1.07998 * 119.78861 * 359.97422 * 13 12 11 40 40 H 1.08001 * 119.83949 * 179.97438 * 14 13 12 41 41 H 1.08001 * 120.06211 * 180.02562 * 15 14 13 42 42 H 0.96998 * 120.00026 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.16085 * 0.03032 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5949 1.1260 0.4682 5 6 4.2493 -0.0013 -0.3395 6 6 3.5839 -1.3239 0.0487 7 1 3.8881 -1.5996 1.0584 8 7 3.9995 -2.3712 -0.8878 9 6 3.9811 -3.6634 -0.5051 10 8 3.6200 -3.9599 0.6174 11 7 4.3640 -4.6267 -1.3664 12 6 4.4484 -5.9560 -0.9370 13 6 4.1316 -6.9913 -1.8134 14 6 4.2112 -8.3103 -1.3989 15 6 4.6052 -8.6128 -0.1148 16 6 4.9285 -7.5772 0.7819 17 6 5.3334 -7.8801 2.1024 18 1 5.7846 -8.8361 2.3230 19 6 5.1497 -6.9408 3.1233 20 7 4.3280 -5.9378 2.9492 21 14 6.0775 -7.1194 4.7347 22 1 7.3721 -6.3976 4.6431 23 1 5.2675 -6.5446 5.8386 24 1 6.3307 -8.5577 5.0035 25 6 4.8516 -6.2398 0.3544 26 6 2.0900 -1.1780 0.0055 27 8 1.4159 -2.1855 -0.0313 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 2.1398 1.6997 -1.0090 32 1 1.6271 1.9718 0.6696 33 1 4.1384 2.0565 0.3042 34 1 3.6101 0.8726 1.5282 35 1 4.1088 0.1813 -1.4050 36 1 5.3144 -0.0451 -0.1122 37 1 4.2880 -2.1345 -1.7831 38 1 4.5810 -4.3987 -2.2839 39 1 3.8211 -6.7639 -2.8225 40 1 3.9629 -9.1055 -2.0862 41 1 4.6662 -9.6429 0.2038 42 1 4.2003 -5.2869 3.6570 43 1 5.1013 -5.4379 1.0334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334981264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:38 Heat of formation + Delta-G solvation = -55.887457 kcal Electronic energy + Delta-G solvation = -26838.889596 eV Core-core repulsion = 23076.006070 eV Total energy + Delta-G solvation = -3762.883526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.94358 -40.86392 -39.00252 -37.57115 -36.40941 -35.86910 -34.93250 -33.50557 -31.43203 -30.46518 -29.12540 -28.08195 -27.16341 -25.10490 -23.48418 -23.22371 -22.56131 -21.43407 -20.01985 -19.61813 -18.84616 -18.05100 -17.70337 -17.43659 -17.15445 -16.50063 -16.46225 -15.99368 -15.70304 -15.36529 -15.04435 -14.87711 -14.68346 -14.51346 -14.38011 -14.03813 -13.61010 -13.44373 -13.23460 -12.99500 -12.97487 -12.83417 -12.60430 -12.42383 -12.21087 -12.19375 -11.88462 -11.82005 -11.52381 -11.19449 -11.12940 -10.81809 -10.70736 -9.98614 -9.72969 -9.26392 -8.70955 -8.39219 -6.28400 0.95854 1.15838 1.34794 1.35176 1.50060 1.51136 1.84090 2.05524 2.22803 2.42743 2.85002 3.33881 3.53858 3.64995 3.80843 3.82605 3.99882 4.27346 4.41050 4.47224 4.51088 4.59296 4.67237 4.73220 4.78872 4.88990 4.92209 5.03046 5.05777 5.15232 5.22731 5.29714 5.30604 5.41338 5.45281 5.47317 5.80548 5.92477 6.04072 6.19365 6.26747 6.41781 6.47657 6.73998 7.01050 7.10872 7.14531 7.21877 7.79872 8.42038 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.003993 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.526607 B = 7010.771195 C = 8129.921851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.606 5.606 3 C 0.104 3.896 4 C -0.129 4.129 5 C -0.116 4.116 6 C 0.157 3.843 7 H 0.085 0.915 8 N -0.716 5.716 9 C 0.684 3.316 10 O -0.575 6.575 11 N -0.674 5.674 12 C 0.162 3.838 13 C -0.263 4.263 14 C -0.078 4.078 15 C -0.261 4.261 16 C 0.086 3.914 17 C -0.505 4.505 18 H 0.077 0.923 19 C 0.026 3.974 20 N -0.796 5.796 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.187 4.187 26 C 0.486 3.514 27 O -0.586 6.586 28 H 0.060 0.940 29 H 0.106 0.894 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.131 0.869 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.413 0.587 38 H 0.413 0.587 39 H 0.124 0.876 40 H 0.130 0.870 41 H 0.098 0.902 42 H 0.278 0.722 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 22.369 -8.398 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C -0.017 4.017 4 C -0.167 4.167 5 C -0.154 4.154 6 C 0.048 3.952 7 H 0.103 0.897 8 N -0.375 5.375 9 C 0.384 3.616 10 O -0.449 6.449 11 N -0.323 5.323 12 C 0.067 3.933 13 C -0.284 4.284 14 C -0.096 4.096 15 C -0.281 4.281 16 C 0.083 3.917 17 C -0.534 4.534 18 H 0.095 0.905 19 C -0.191 4.191 20 N -0.420 5.420 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.177 1.177 25 C -0.209 4.209 26 C 0.272 3.728 27 O -0.465 6.465 28 H 0.079 0.921 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.251 0.749 38 H 0.249 0.751 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.776 21.854 -7.273 23.045 hybrid contribution 0.057 -0.353 0.146 0.386 sum -0.719 21.501 -7.127 22.663 Atomic orbital electron populations 1.21765 0.79421 1.03166 1.02338 1.47512 1.07878 1.06415 1.72131 1.21849 0.93415 0.82585 1.03841 1.21931 0.94538 1.00302 0.99966 1.21988 1.01340 0.89405 1.02703 1.20702 0.89244 0.89834 0.95442 0.89700 1.44610 1.71988 1.02979 1.17887 1.16326 0.78635 0.81772 0.84842 1.91142 1.51693 1.81254 1.20792 1.42285 1.71223 1.04862 1.13919 1.17551 0.98867 0.82356 0.94485 1.20435 1.16003 0.91914 1.00087 1.20700 0.98037 0.95706 0.95180 1.21185 1.13143 0.97653 0.96094 1.17901 0.88665 0.91644 0.93483 1.19780 1.38189 1.02295 0.93135 0.90496 1.26890 0.94199 0.93735 1.04268 1.70102 1.26338 1.10885 1.34641 0.85256 0.78660 0.79934 0.76105 1.18617 1.19818 1.17705 1.21255 1.07503 0.97269 0.94845 1.21218 0.92205 0.83178 0.76167 1.90778 1.67050 1.38080 1.50601 0.92122 0.87593 0.94014 0.89084 0.88139 0.85088 0.91635 0.88289 0.88314 0.74940 0.75056 0.85783 0.85262 0.88378 0.91131 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.53 10.23 127.77 1.31 2.83 16 2 N -0.61 -13.08 3.21 -851.63 -2.73 -15.82 16 3 C 0.10 1.01 6.39 86.49 0.55 1.57 16 4 C -0.13 -1.14 6.02 30.68 0.18 -0.95 16 5 C -0.12 -1.55 5.51 30.73 0.17 -1.38 16 6 C 0.16 4.40 2.69 44.10 0.12 4.52 16 7 H 0.09 2.98 7.58 -2.39 -0.02 2.96 16 8 N -0.72 -21.97 4.98 -462.10 -2.30 -24.27 16 9 C 0.68 30.29 7.71 179.05 1.38 31.68 16 10 O -0.57 -32.83 13.30 -2.07 -0.03 -32.86 16 11 N -0.67 -27.93 5.34 -317.33 -1.70 -29.63 16 12 C 0.16 8.23 6.25 38.10 0.24 8.46 16 13 C -0.26 -12.10 9.97 22.58 0.23 -11.87 16 14 C -0.08 -3.62 10.02 22.20 0.22 -3.40 16 15 C -0.26 -13.96 9.79 22.75 0.22 -13.74 16 16 C 0.09 5.17 5.56 -21.31 -0.12 5.05 16 17 C -0.50 -30.12 9.05 23.46 0.21 -29.91 16 18 H 0.08 4.37 7.90 -2.91 -0.02 4.34 16 19 C 0.03 1.46 5.15 85.25 0.44 1.89 16 20 N -0.80 -48.73 10.96 21.82 0.24 -48.49 16 21 Si 0.98 42.74 29.59 68.60 2.03 44.77 16 22 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.25 -10.51 7.11 99.48 0.71 -9.81 16 25 C -0.19 -11.11 7.28 22.85 0.17 -10.94 16 26 C 0.49 15.68 7.20 87.71 0.63 16.31 16 27 O -0.59 -26.87 14.95 -1.11 -0.02 -26.89 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.11 1.25 7.86 -2.39 -0.02 1.24 16 30 H 0.04 1.17 7.20 -2.38 -0.02 1.15 16 31 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.10 0.56 7.92 -2.39 -0.02 0.54 16 33 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.06 0.78 8.12 -2.39 -0.02 0.77 16 35 H 0.10 0.90 8.10 -2.38 -0.02 0.88 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.41 8.74 8.60 -92.71 -0.80 7.94 16 38 H 0.41 12.66 8.84 -92.71 -0.82 11.84 16 39 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 40 H 0.13 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 42 H 0.28 16.04 8.30 -92.71 -0.77 15.27 16 43 H 0.11 7.04 4.63 -2.91 -0.01 7.03 16 Total: -1.00 -93.39 354.25 0.89 -92.50 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.56 Total: 40.55 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.95 Total: 0.12 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -6.49 Total: -118.20 kcal Atomic # 8 Polarization: -59.70 SS G_CDS: -0.04 Total: -59.74 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -93.39 0.89 -92.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334981264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.613 kcal (2) G-P(sol) polarization free energy of solvation -93.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds