Wall clock time and date at job start Tue Mar 31 2020 11:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.45761 * 117.94674 * 2 1 4 4 C 1.52913 * 110.48760 * 199.07616 * 3 2 1 5 5 C 1.53304 * 108.59339 * 309.20145 * 4 3 2 6 6 C 1.53073 * 108.45405 * 67.64536 * 5 4 3 7 7 H 1.09003 * 109.39977 * 71.08197 * 6 5 4 8 8 N 1.46498 * 109.40044 * 190.90955 * 6 5 4 9 9 C 1.34780 * 120.00096 * 205.17589 * 8 6 5 10 10 O 1.21580 * 119.99602 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99927 * 179.97438 * 9 8 6 12 12 C 1.39243 * 119.99525 * 185.68548 * 11 9 8 13 13 C 1.39478 * 119.83801 * 34.66301 * 12 11 9 14 14 C 1.36369 * 120.16876 * 179.97438 * 13 12 11 15 15 C 1.40868 * 119.83172 * 0.02756 * 14 13 12 16 16 C 1.41158 * 120.16298 * 179.72253 * 15 14 13 17 17 H 1.08000 * 119.99965 * 325.72244 * 16 15 14 18 18 C 1.39895 * 119.99921 * 145.72105 * 16 15 14 19 19 N 1.30885 * 119.99781 * 354.49392 * 18 16 15 20 20 Si 1.86800 * 120.00057 * 174.48515 * 18 16 15 21 21 H 1.48502 * 109.46715 * 60.00370 * 20 18 16 22 22 H 1.48504 * 109.47110 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47346 * 300.00550 * 20 18 16 24 24 C 1.40868 * 119.67069 * 359.97438 * 15 14 13 25 25 C 1.36372 * 119.83075 * 359.97438 * 24 15 14 26 26 C 1.33349 * 117.94827 * 179.97438 * 2 1 3 27 27 O 1.21282 * 118.24717 * 357.77686 * 26 2 1 28 28 H 1.09004 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47091 * 300.02120 * 1 2 3 30 30 H 1.09002 * 109.47600 * 60.02318 * 1 2 3 31 31 H 1.09005 * 109.29512 * 319.38769 * 3 2 1 32 32 H 1.08997 * 109.30166 * 78.76179 * 3 2 1 33 33 H 1.09007 * 109.60332 * 69.00040 * 4 3 2 34 34 H 1.09000 * 109.60480 * 189.32460 * 4 3 2 35 35 H 1.09007 * 109.71096 * 307.87763 * 5 4 3 36 36 H 1.08996 * 109.60997 * 187.36047 * 5 4 3 37 37 H 0.96999 * 119.99967 * 25.17421 * 8 6 5 38 38 H 0.96993 * 120.00081 * 5.68779 * 11 9 8 39 39 H 1.07997 * 119.91144 * 0.02586 * 13 12 11 40 40 H 1.08009 * 120.08379 * 180.02562 * 14 13 12 41 41 H 0.96996 * 119.99549 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.08311 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.91875 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1260 -0.4681 5 6 4.2475 -0.0005 0.3413 6 6 3.5838 -1.3239 -0.0476 7 1 3.8885 -1.5987 -1.0574 8 7 4.0009 -2.3709 0.8884 9 6 3.9876 -3.6627 0.5041 10 8 3.6291 -3.9590 -0.6192 11 7 4.3718 -4.6259 1.3650 12 6 4.4716 -5.9459 0.9334 13 6 4.8923 -6.2207 -0.3678 14 6 4.9930 -7.5110 -0.7974 15 6 4.6704 -8.5677 0.0765 16 6 4.7666 -9.9058 -0.3628 17 1 4.5382 -10.1552 -1.3885 18 6 5.1577 -10.9088 0.5306 19 7 5.5381 -10.5937 1.7426 20 14 5.1369 -12.6978 -0.0064 21 1 6.0458 -12.8768 -1.1671 22 1 5.5918 -13.5569 1.1162 23 1 3.7561 -13.0820 -0.3951 24 6 4.2463 -8.2823 1.3891 25 6 4.1514 -6.9870 1.8048 26 6 2.0899 -1.1780 0.0005 27 8 1.4159 -2.1853 0.0424 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5142 0.8899 30 1 -0.3634 0.5135 -0.8902 31 1 1.6269 1.9718 -0.6697 32 1 2.1398 1.6999 1.0090 33 1 3.6100 0.8726 -1.5282 34 1 4.1375 2.0574 -0.3070 35 1 4.1053 0.1822 1.4065 36 1 5.3128 -0.0437 0.1149 37 1 4.2865 -2.1345 1.7847 38 1 4.5786 -4.3995 2.2852 39 1 5.1396 -5.4094 -1.0364 40 1 5.3193 -7.7222 -1.8051 41 1 5.8097 -11.2891 2.3618 42 1 3.9969 -9.0873 2.0645 43 1 3.8268 -6.7666 2.8110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336078715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:42 Heat of formation + Delta-G solvation = -31.167300 kcal Electronic energy + Delta-G solvation = -26017.250623 eV Core-core repulsion = 22255.439044 eV Total energy + Delta-G solvation = -3761.811579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.92171 -39.50047 -37.37142 -36.67850 -35.32486 -34.20646 -33.01576 -32.37822 -29.56624 -29.27012 -28.31645 -27.34590 -25.03248 -23.90970 -22.65833 -21.61546 -20.81363 -20.01321 -19.08471 -17.84696 -17.25116 -17.15648 -16.78778 -16.48549 -15.87924 -15.12568 -15.05738 -14.48858 -14.44012 -14.02137 -13.87435 -13.75322 -13.69615 -12.95612 -12.89252 -12.61212 -12.40576 -12.20203 -12.02544 -11.81878 -11.67167 -11.63198 -11.41727 -11.26883 -11.06236 -10.88067 -10.45601 -10.08515 -10.00990 -9.68576 -9.41990 -9.13931 -8.90950 -8.84225 -8.68074 -7.45221 -6.75815 -6.57584 -4.21900 2.42420 2.72913 2.79042 3.13899 3.14899 3.17465 3.18274 3.26570 3.82018 4.05234 4.27104 4.29461 4.36473 4.39787 4.72234 4.79912 4.90820 4.99649 5.09734 5.17663 5.27369 5.36078 5.40072 5.53849 5.71678 5.72515 5.76728 6.17821 6.27884 6.43877 6.49861 6.84926 6.86844 7.13002 7.23034 7.26663 7.34832 7.44434 7.72337 7.93731 8.04363 8.12988 8.16731 8.38953 8.55134 8.71629 9.00888 9.03085 9.20508 10.38604 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035204 B = 0.002439 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.173415 B =11477.156812 C =11661.504414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.614 5.614 3 C 0.114 3.886 4 C -0.133 4.133 5 C -0.129 4.129 6 C 0.161 3.839 7 H 0.119 0.881 8 N -0.737 5.737 9 C 0.702 3.298 10 O -0.563 6.563 11 N -0.668 5.668 12 C 0.031 3.969 13 C -0.084 4.084 14 C -0.203 4.203 15 C 0.104 3.896 16 C -0.466 4.466 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.814 5.814 20 Si 0.912 3.088 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.266 1.266 24 C -0.137 4.137 25 C -0.121 4.121 26 C 0.494 3.506 27 O -0.516 6.516 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.395 0.605 38 H 0.391 0.609 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.277 0.723 42 H 0.121 0.879 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 24.764 1.731 24.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.350 5.350 3 C -0.009 4.009 4 C -0.171 4.171 5 C -0.168 4.168 6 C 0.051 3.949 7 H 0.137 0.863 8 N -0.394 5.394 9 C 0.402 3.598 10 O -0.438 6.438 11 N -0.314 5.314 12 C -0.062 4.062 13 C -0.104 4.104 14 C -0.223 4.223 15 C 0.101 3.899 16 C -0.497 4.497 17 H 0.093 0.907 18 C -0.143 4.143 19 N -0.441 5.441 20 Si 0.737 3.263 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.191 1.191 24 C -0.157 4.157 25 C -0.142 4.142 26 C 0.280 3.720 27 O -0.390 6.390 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.228 0.772 38 H 0.224 0.776 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.138 0.862 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.027 23.797 0.905 24.006 hybrid contribution 0.191 -0.400 0.808 0.922 sum -2.836 23.397 1.714 23.630 Atomic orbital electron populations 1.21731 0.79850 1.04807 1.00881 1.47309 1.07352 1.05871 1.74456 1.21379 0.93147 0.84822 1.01557 1.21842 0.94663 0.99572 1.01030 1.21952 1.01172 0.92506 1.01148 1.20502 0.89605 0.87802 0.96998 0.86328 1.44832 1.73141 1.04786 1.16667 1.15873 0.78389 0.80168 0.85340 1.90928 1.52297 1.80807 1.19720 1.42077 1.70614 1.06220 1.12442 1.17009 1.12804 0.80426 0.95973 1.20255 0.99533 0.96350 0.94259 1.20777 1.09292 0.92188 1.00092 1.17652 0.88004 0.92785 0.91435 1.19433 1.41260 0.91685 0.97324 0.90679 1.25835 0.92975 1.01092 0.94367 1.69787 1.33655 1.35152 1.05541 0.86319 0.79559 0.81546 0.78893 1.19184 1.20523 1.19064 1.20912 1.02842 0.93996 0.97974 1.20247 1.03323 0.93001 0.97626 1.20887 0.91647 0.82928 0.76574 1.90789 1.65502 1.35429 1.47234 0.89007 0.92476 0.92395 0.90628 0.91758 0.90391 0.89055 0.90541 0.89540 0.77155 0.77647 0.88055 0.88634 0.91192 0.86157 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.64 10.47 59.84 0.63 1.27 16 2 N -0.61 -6.11 3.21 -182.85 -0.59 -6.70 16 3 C 0.11 0.63 6.40 -4.49 -0.03 0.60 16 4 C -0.13 -0.63 6.02 -26.62 -0.16 -0.79 16 5 C -0.13 -0.83 5.50 -26.54 -0.15 -0.98 16 6 C 0.16 1.90 2.70 -69.30 -0.19 1.72 16 7 H 0.12 1.61 7.57 -51.93 -0.39 1.22 16 8 N -0.74 -9.92 4.97 -60.03 -0.30 -10.21 16 9 C 0.70 13.44 7.70 -86.92 -0.67 12.77 16 10 O -0.56 -13.40 13.32 4.02 0.05 -13.35 16 11 N -0.67 -12.69 5.31 -14.10 -0.07 -12.76 16 12 C 0.03 0.72 6.26 -83.56 -0.52 0.20 16 13 C -0.08 -2.11 8.57 -39.79 -0.34 -2.45 16 14 C -0.20 -5.39 9.74 -39.26 -0.38 -5.78 16 15 C 0.10 2.90 5.50 -106.80 -0.59 2.31 16 16 C -0.47 -12.91 9.02 -37.85 -0.34 -13.25 16 17 H 0.08 2.01 7.85 -52.49 -0.41 1.60 16 18 C 0.07 1.88 5.31 -17.34 -0.09 1.79 16 19 N -0.81 -21.71 10.97 55.55 0.61 -21.10 16 20 Si 0.91 19.56 29.56 -169.99 -5.03 14.53 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 C -0.14 -3.68 8.57 -39.26 -0.34 -4.02 16 25 C -0.12 -2.93 9.90 -39.79 -0.39 -3.32 16 26 C 0.49 6.90 7.20 -11.87 -0.09 6.81 16 27 O -0.52 -10.08 14.72 4.29 0.06 -10.01 16 28 H 0.09 1.12 6.59 -51.93 -0.34 0.78 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.30 8.10 -51.93 -0.42 -0.12 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.41 8.12 -51.92 -0.42 -0.01 16 34 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.39 3.88 8.60 -40.82 -0.35 3.53 16 38 H 0.39 5.85 8.83 -40.82 -0.36 5.49 16 39 H 0.10 2.51 6.50 -52.49 -0.34 2.17 16 40 H 0.10 2.40 8.06 -52.48 -0.42 1.98 16 41 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 42 H 0.12 3.30 6.47 -52.49 -0.34 2.96 16 43 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -36.63 354.12 -9.47 -46.10 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.90 Total: 11.28 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -3.65 Total: -3.11 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.35 Total: -50.78 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.12 Total: -23.36 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.63 -9.47 -46.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336078715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.935 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds