Wall clock time and date at job start Tue Mar 31 2020 11:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.45761 * 117.94674 * 2 1 4 4 C 1.52913 * 110.48760 * 199.07616 * 3 2 1 5 5 C 1.53304 * 108.59339 * 309.20145 * 4 3 2 6 6 C 1.53073 * 108.45405 * 67.64536 * 5 4 3 7 7 H 1.09003 * 109.39977 * 71.08197 * 6 5 4 8 8 N 1.46498 * 109.40044 * 190.90955 * 6 5 4 9 9 C 1.34780 * 120.00096 * 205.17589 * 8 6 5 10 10 O 1.21580 * 119.99602 * 359.97438 * 9 8 6 11 11 N 1.34776 * 119.99927 * 179.97438 * 9 8 6 12 12 C 1.39243 * 119.99525 * 185.68548 * 11 9 8 13 13 C 1.39478 * 119.83801 * 34.66301 * 12 11 9 14 14 C 1.36369 * 120.16876 * 179.97438 * 13 12 11 15 15 C 1.40868 * 119.83172 * 0.02756 * 14 13 12 16 16 C 1.41158 * 120.16298 * 179.72253 * 15 14 13 17 17 H 1.08000 * 119.99965 * 325.72244 * 16 15 14 18 18 C 1.39895 * 119.99921 * 145.72105 * 16 15 14 19 19 N 1.30885 * 119.99781 * 354.49392 * 18 16 15 20 20 Si 1.86800 * 120.00057 * 174.48515 * 18 16 15 21 21 H 1.48502 * 109.46715 * 60.00370 * 20 18 16 22 22 H 1.48504 * 109.47110 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47346 * 300.00550 * 20 18 16 24 24 C 1.40868 * 119.67069 * 359.97438 * 15 14 13 25 25 C 1.36372 * 119.83075 * 359.97438 * 24 15 14 26 26 C 1.33349 * 117.94827 * 179.97438 * 2 1 3 27 27 O 1.21282 * 118.24717 * 357.77686 * 26 2 1 28 28 H 1.09004 * 109.47256 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47091 * 300.02120 * 1 2 3 30 30 H 1.09002 * 109.47600 * 60.02318 * 1 2 3 31 31 H 1.09005 * 109.29512 * 319.38769 * 3 2 1 32 32 H 1.08997 * 109.30166 * 78.76179 * 3 2 1 33 33 H 1.09007 * 109.60332 * 69.00040 * 4 3 2 34 34 H 1.09000 * 109.60480 * 189.32460 * 4 3 2 35 35 H 1.09007 * 109.71096 * 307.87763 * 5 4 3 36 36 H 1.08996 * 109.60997 * 187.36047 * 5 4 3 37 37 H 0.96999 * 119.99967 * 25.17421 * 8 6 5 38 38 H 0.96993 * 120.00081 * 5.68779 * 11 9 8 39 39 H 1.07997 * 119.91144 * 0.02586 * 13 12 11 40 40 H 1.08009 * 120.08379 * 180.02562 * 14 13 12 41 41 H 0.96996 * 119.99549 * 180.02562 * 19 18 16 42 42 H 1.07998 * 120.08311 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.91875 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1260 -0.4681 5 6 4.2475 -0.0005 0.3413 6 6 3.5838 -1.3239 -0.0476 7 1 3.8885 -1.5987 -1.0574 8 7 4.0009 -2.3709 0.8884 9 6 3.9876 -3.6627 0.5041 10 8 3.6291 -3.9590 -0.6192 11 7 4.3718 -4.6259 1.3650 12 6 4.4716 -5.9459 0.9334 13 6 4.8923 -6.2207 -0.3678 14 6 4.9930 -7.5110 -0.7974 15 6 4.6704 -8.5677 0.0765 16 6 4.7666 -9.9058 -0.3628 17 1 4.5382 -10.1552 -1.3885 18 6 5.1577 -10.9088 0.5306 19 7 5.5381 -10.5937 1.7426 20 14 5.1369 -12.6978 -0.0064 21 1 6.0458 -12.8768 -1.1671 22 1 5.5918 -13.5569 1.1162 23 1 3.7561 -13.0820 -0.3951 24 6 4.2463 -8.2823 1.3891 25 6 4.1514 -6.9870 1.8048 26 6 2.0899 -1.1780 0.0005 27 8 1.4159 -2.1853 0.0424 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5142 0.8899 30 1 -0.3634 0.5135 -0.8902 31 1 1.6269 1.9718 -0.6697 32 1 2.1398 1.6999 1.0090 33 1 3.6100 0.8726 -1.5282 34 1 4.1375 2.0574 -0.3070 35 1 4.1053 0.1822 1.4065 36 1 5.3128 -0.0437 0.1149 37 1 4.2865 -2.1345 1.7847 38 1 4.5786 -4.3995 2.2852 39 1 5.1396 -5.4094 -1.0364 40 1 5.3193 -7.7222 -1.8051 41 1 5.8097 -11.2891 2.3618 42 1 3.9969 -9.0873 2.0645 43 1 3.8268 -6.7666 2.8110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336078715.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:41 Heat of formation + Delta-G solvation = -57.863137 kcal Electronic energy + Delta-G solvation = -26018.408241 eV Core-core repulsion = 22255.439044 eV Total energy + Delta-G solvation = -3762.969197 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.99224 -40.96063 -39.19698 -37.57285 -36.55294 -35.93206 -34.74712 -33.45852 -31.50158 -30.85406 -29.60922 -28.07791 -26.77601 -24.94318 -23.48679 -23.28932 -22.65078 -21.64209 -20.04307 -19.32517 -19.05490 -18.46746 -17.75711 -17.51080 -17.17410 -16.92068 -16.28027 -15.82794 -15.67916 -15.44983 -15.06266 -14.88469 -14.70500 -14.47313 -14.35618 -14.00046 -13.66285 -13.60040 -13.34583 -13.20216 -12.97852 -12.80562 -12.69571 -12.39731 -12.34575 -12.23233 -11.88426 -11.83296 -11.59051 -11.26137 -11.17260 -11.02890 -10.56069 -10.04716 -9.70818 -9.47856 -8.71097 -8.53348 -6.28727 0.85462 1.12685 1.32408 1.39880 1.50094 1.51633 1.82836 2.04022 2.25207 2.33110 2.82915 3.32197 3.52542 3.64815 3.70670 3.83352 4.01401 4.27817 4.37681 4.42917 4.47230 4.49818 4.61460 4.68948 4.80547 4.90647 4.93555 5.05107 5.07726 5.10459 5.14611 5.23995 5.31926 5.38704 5.43988 5.46843 5.64599 5.78043 6.03340 6.10352 6.20078 6.38853 6.41585 6.67022 6.96791 7.01175 7.10541 7.17980 7.66999 8.44540 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035204 B = 0.002439 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.173415 B =11477.156812 C =11661.504414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.605 5.605 3 C 0.104 3.896 4 C -0.129 4.129 5 C -0.118 4.118 6 C 0.156 3.844 7 H 0.095 0.905 8 N -0.715 5.715 9 C 0.699 3.301 10 O -0.613 6.613 11 N -0.660 5.660 12 C 0.044 3.956 13 C -0.094 4.094 14 C -0.220 4.220 15 C 0.072 3.928 16 C -0.504 4.504 17 H 0.070 0.930 18 C 0.032 3.968 19 N -0.840 5.840 20 Si 0.986 3.014 21 H -0.262 1.262 22 H -0.266 1.266 23 H -0.263 1.263 24 C -0.154 4.154 25 C -0.121 4.121 26 C 0.486 3.514 27 O -0.587 6.587 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.416 0.584 38 H 0.413 0.587 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.286 0.714 42 H 0.109 0.891 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.920 27.659 3.031 27.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.338 5.338 3 C -0.017 4.017 4 C -0.167 4.167 5 C -0.156 4.156 6 C 0.047 3.953 7 H 0.113 0.887 8 N -0.372 5.372 9 C 0.399 3.601 10 O -0.492 6.492 11 N -0.308 5.308 12 C -0.050 4.050 13 C -0.114 4.114 14 C -0.240 4.240 15 C 0.070 3.930 16 C -0.535 4.535 17 H 0.089 0.911 18 C -0.181 4.181 19 N -0.468 5.468 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.190 1.190 23 H -0.187 1.187 24 C -0.174 4.174 25 C -0.141 4.141 26 C 0.272 3.728 27 O -0.467 6.467 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.147 0.853 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.253 0.747 38 H 0.250 0.750 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.467 26.841 2.265 27.050 hybrid contribution -0.035 -1.032 0.417 1.113 sum -2.502 25.809 2.682 26.069 Atomic orbital electron populations 1.21818 0.79568 1.03026 1.03198 1.47472 1.07890 1.06434 1.72032 1.21806 0.93548 0.82657 1.03731 1.21911 0.94283 1.00330 1.00135 1.21993 1.01542 0.89448 1.02609 1.20770 0.89074 0.89739 0.95734 0.88708 1.44611 1.71595 1.03022 1.17996 1.16109 0.77781 0.81671 0.84515 1.90898 1.54335 1.81969 1.21974 1.41865 1.70657 1.04654 1.13658 1.17055 1.10360 0.82474 0.95135 1.20360 0.99980 0.95786 0.95282 1.20913 1.10039 0.92768 1.00283 1.17971 0.89166 0.93478 0.92398 1.19658 1.43429 0.92616 0.97807 0.91139 1.26689 0.91826 1.05392 0.94178 1.69840 1.33581 1.36907 1.06448 0.85197 0.79624 0.75616 0.78847 1.18680 1.18974 1.18741 1.20906 1.03955 0.94943 0.97641 1.20492 1.02386 0.92075 0.99142 1.21254 0.92295 0.83223 0.76001 1.90764 1.66940 1.37990 1.50968 0.92826 0.89922 0.90190 0.88343 0.89342 0.91241 0.85296 0.88551 0.88007 0.74683 0.75026 0.88052 0.88555 0.90364 0.87284 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 10.47 127.77 1.34 2.48 16 2 N -0.60 -10.95 3.21 -851.61 -2.73 -13.68 16 3 C 0.10 0.72 6.40 86.49 0.55 1.27 16 4 C -0.13 -0.67 6.02 30.67 0.18 -0.49 16 5 C -0.12 -1.10 5.50 30.72 0.17 -0.93 16 6 C 0.16 3.55 2.70 44.11 0.12 3.67 16 7 H 0.10 2.64 7.57 -2.39 -0.02 2.62 16 8 N -0.71 -18.45 4.97 -462.09 -2.29 -20.75 16 9 C 0.70 26.84 7.70 179.05 1.38 28.22 16 10 O -0.61 -30.22 13.32 -2.75 -0.04 -30.26 16 11 N -0.66 -24.66 5.31 -316.78 -1.68 -26.34 16 12 C 0.04 2.09 6.26 38.57 0.24 2.33 16 13 C -0.09 -4.88 8.57 22.13 0.19 -4.69 16 14 C -0.22 -12.22 9.74 22.48 0.22 -12.00 16 15 C 0.07 4.21 5.50 -21.27 -0.12 4.09 16 16 C -0.50 -29.05 9.02 23.39 0.21 -28.84 16 17 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 18 C 0.03 1.67 5.31 85.24 0.45 2.12 16 19 N -0.84 -45.54 10.97 21.82 0.24 -45.30 16 20 Si 0.99 40.45 29.56 68.60 2.03 42.48 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 C -0.15 -8.53 8.57 22.48 0.19 -8.33 16 25 C -0.12 -5.83 9.90 22.14 0.22 -5.61 16 26 C 0.49 13.48 7.20 87.72 0.63 14.11 16 27 O -0.59 -23.99 14.72 -1.82 -0.03 -24.02 16 28 H 0.05 1.37 6.59 -2.39 -0.02 1.35 16 29 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 0.32 8.10 -2.38 -0.02 0.31 16 32 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.07 0.53 8.12 -2.38 -0.02 0.51 16 34 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.10 0.58 8.10 -2.38 -0.02 0.56 16 36 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.42 7.14 8.60 -92.71 -0.80 6.34 16 38 H 0.41 11.58 8.83 -92.71 -0.82 10.76 16 39 H 0.10 5.22 6.50 -2.91 -0.02 5.21 16 40 H 0.10 5.13 8.06 -2.91 -0.02 5.11 16 41 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 42 H 0.11 6.18 6.47 -2.91 -0.02 6.16 16 43 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -86.59 354.12 0.91 -85.68 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.56 Total: 34.78 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.98 Total: -2.59 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -6.47 Total: -106.07 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.06 Total: -54.27 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -86.59 0.91 -85.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336078715.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.817 kcal (2) G-P(sol) polarization free energy of solvation -86.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds