Wall clock time and date at job start Tue Mar 31 2020 11:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03602 * 2 1 4 4 C 1.35312 * 107.74772 * 180.15058 * 3 2 1 5 5 C 1.39869 * 107.91889 * 359.61173 * 4 3 2 6 6 C 1.50699 * 125.90295 * 180.22479 * 5 4 3 7 7 C 1.52991 * 109.47655 * 124.99832 * 6 5 4 8 8 C 1.50699 * 109.47655 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99400 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00412 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00017 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47373 * 89.99851 * 11 10 8 13 13 H 1.08003 * 119.99525 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00251 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00223 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99900 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47293 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47228 * 120.00297 * 16 14 12 19 19 H 1.48502 * 109.46809 * 239.99862 * 16 14 12 20 20 C 1.46499 * 120.00189 * 0.02562 * 10 8 7 21 21 C 1.50699 * 109.47261 * 89.99693 * 20 10 8 22 22 C 1.34514 * 125.78831 * 89.71469 * 21 20 10 23 23 C 1.41383 * 106.84379 * 179.89391 * 22 21 20 24 24 C 1.34516 * 106.83713 * 0.37488 * 23 22 21 25 25 O 1.34300 * 108.42186 * 359.77194 * 24 23 22 26 26 N 1.30837 * 108.20188 * 0.23962 * 5 4 3 27 27 H 1.08999 * 109.47098 * 270.25891 * 1 2 3 28 28 H 1.08998 * 109.47303 * 30.25669 * 1 2 3 29 29 H 1.08994 * 109.47129 * 150.25391 * 1 2 3 30 30 H 1.08008 * 126.12704 * 0.02562 * 3 2 1 31 31 H 1.08002 * 126.04491 * 179.88067 * 4 3 2 32 32 H 1.09002 * 109.46897 * 245.00208 * 6 5 4 33 33 H 1.09007 * 109.46619 * 4.99549 * 6 5 4 34 34 H 1.09002 * 109.47275 * 300.00144 * 7 6 5 35 35 H 1.09007 * 109.47338 * 60.00157 * 7 6 5 36 36 H 1.08996 * 109.47457 * 210.00081 * 11 10 8 37 37 H 1.09004 * 109.47064 * 330.00370 * 11 10 8 38 38 H 0.96998 * 120.00297 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.47130 * 210.00044 * 20 10 8 40 40 H 1.09006 * 109.46647 * 330.00129 * 20 10 8 41 41 H 1.08006 * 126.57806 * 0.02704 * 22 21 20 42 42 H 1.07995 * 126.58270 * 180.17219 * 23 22 21 43 43 H 1.07997 * 125.78987 * 179.75172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 3.5347 -0.7320 0.0035 6 6 4.7497 -1.6235 0.0075 7 6 4.6719 -2.5864 1.1938 8 6 5.8866 -3.4784 1.1974 9 8 6.7315 -3.3556 0.3361 10 7 6.0344 -4.4118 2.1582 11 6 7.2155 -5.2785 2.1620 12 6 8.3097 -4.6332 2.9729 13 1 8.1418 -3.6735 3.4392 14 6 9.5245 -5.2682 3.1204 15 7 9.7288 -6.4369 2.5530 16 14 10.8804 -4.4684 4.1261 17 1 10.4017 -3.1662 4.6554 18 1 11.2474 -5.3574 5.2576 19 1 12.0699 -4.2464 3.2652 20 6 5.0140 -4.5598 3.1990 21 6 3.9750 -5.5531 2.7462 22 6 4.0124 -6.8812 2.9559 23 6 2.8453 -7.4217 2.3686 24 6 2.1687 -6.3924 1.8280 25 8 2.8577 -5.2631 2.0597 26 7 2.2892 -1.1327 0.0055 27 1 -0.3633 0.0046 1.0276 28 1 -0.3634 0.8876 -0.5178 29 1 -0.3633 -0.8922 -0.5099 30 1 1.9281 2.1194 0.0004 31 1 4.4211 1.2964 -0.0061 32 1 4.7853 -2.1932 -0.9212 33 1 5.6483 -1.0125 0.0937 34 1 4.6362 -2.0168 2.1224 35 1 3.7733 -3.1974 1.1076 36 1 6.9578 -6.2421 2.6014 37 1 7.5609 -5.4265 1.1387 38 1 10.5833 -6.8838 2.6570 39 1 5.4808 -4.9155 4.1175 40 1 4.5395 -3.5957 3.3822 41 1 4.7846 -7.4294 3.4753 42 1 2.5546 -8.4617 2.3538 43 1 1.2308 -6.4624 1.2972 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339585309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:12 Heat of formation + Delta-G solvation = 58.493215 kcal Electronic energy + Delta-G solvation = -26189.196517 eV Core-core repulsion = 22431.272909 eV Total energy + Delta-G solvation = -3757.923607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.24871 -41.18209 -38.98928 -35.25993 -34.40861 -32.79733 -32.62492 -31.71771 -30.07992 -29.97238 -27.89355 -26.62380 -25.36362 -24.21191 -22.22615 -21.41268 -21.16753 -20.41693 -19.50045 -18.39067 -17.25242 -17.06366 -16.42049 -16.17383 -15.66757 -15.54839 -15.14197 -15.03094 -14.31736 -14.22113 -14.09124 -13.68813 -13.29410 -13.00056 -12.82129 -12.60751 -12.54341 -12.49103 -12.27711 -12.14155 -11.85036 -11.68861 -11.42296 -11.17275 -11.00749 -10.82998 -10.58448 -10.40399 -10.15856 -9.66241 -9.59500 -9.26096 -8.85504 -8.58651 -8.42189 -8.23900 -7.74001 -6.02345 -4.07144 1.83860 1.97684 2.45124 2.79451 2.89201 3.21455 3.31674 3.39301 3.42812 3.54938 4.03915 4.38190 4.46836 4.68346 4.87217 4.91500 5.00037 5.14296 5.17786 5.27614 5.30878 5.31987 5.35185 5.48190 5.55029 5.65418 5.81040 5.90652 5.94466 6.01504 6.07547 6.24588 6.30710 6.32539 6.39920 6.69600 6.78362 6.94184 7.06685 7.39764 7.48874 7.55892 7.73156 7.94132 8.24928 8.38152 8.92351 9.10325 9.58083 11.05856 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.003910 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.661889 B = 7159.453647 C = 9144.763897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.383 5.383 3 C 0.047 3.953 4 C -0.267 4.267 5 C 0.083 3.917 6 C -0.022 4.022 7 C -0.136 4.136 8 C 0.510 3.490 9 O -0.536 6.536 10 N -0.595 5.595 11 C 0.246 3.754 12 C -0.526 4.526 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.191 3.809 21 C -0.025 4.025 22 C -0.195 4.195 23 C -0.215 4.215 24 C -0.049 4.049 25 O -0.173 6.173 26 N -0.291 5.291 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.171 0.829 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.582 9.818 -1.379 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.165 5.165 3 C -0.098 4.098 4 C -0.296 4.296 5 C -0.084 4.084 6 C -0.062 4.062 7 C -0.177 4.177 8 C 0.298 3.702 9 O -0.413 6.413 10 N -0.326 5.326 11 C 0.127 3.873 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.067 3.933 21 C -0.077 4.077 22 C -0.215 4.215 23 C -0.234 4.234 24 C -0.117 4.117 25 O -0.069 6.069 26 N -0.113 5.113 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.188 0.812 31 H 0.165 0.835 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.133 0.867 40 H 0.102 0.898 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -21.004 9.048 -1.954 22.953 hybrid contribution 1.094 0.740 0.627 1.462 sum -19.910 9.788 -1.327 22.225 Atomic orbital electron populations 1.21790 0.74607 1.04219 1.03160 1.48528 1.06471 1.03977 1.57552 1.22484 0.91282 0.93326 1.02754 1.21477 0.97014 0.94571 1.16532 1.22458 0.93343 0.94043 0.98526 1.19774 0.91907 0.95339 0.99174 1.21688 0.98340 0.97939 0.99734 1.20403 0.87175 0.81086 0.81580 1.90668 1.43899 1.69521 1.37183 1.48301 1.22041 1.36090 1.26184 1.19313 0.80483 0.88533 0.98950 1.21478 0.97858 1.05453 1.31708 0.92246 1.24932 0.98320 0.94911 0.95912 1.69947 1.24489 1.14875 1.43972 0.86451 0.81926 0.79361 0.79731 1.19742 1.21033 1.20906 1.19873 0.85117 0.96198 0.92155 1.23318 0.88476 0.96635 0.99254 1.21692 1.00075 0.93666 1.06099 1.21808 0.96985 1.00070 1.04540 1.23917 0.99243 0.83511 1.05065 1.84033 1.29917 1.34799 1.58166 1.77380 1.01400 1.07363 1.25175 0.90957 0.89780 0.89415 0.81189 0.83455 0.89542 0.89087 0.89547 0.88552 0.94933 0.93776 0.92790 0.86723 0.89801 0.83294 0.83858 0.78699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.47 59.85 0.69 1.36 16 2 N -0.38 -4.29 4.01 -68.16 -0.27 -4.56 16 3 C 0.05 0.47 11.49 -17.22 -0.20 0.27 16 4 C -0.27 -3.21 10.72 -40.01 -0.43 -3.64 16 5 C 0.08 1.20 6.49 -82.41 -0.53 0.66 16 6 C -0.02 -0.35 5.08 -27.89 -0.14 -0.49 16 7 C -0.14 -2.26 4.21 -27.89 -0.12 -2.38 16 8 C 0.51 10.91 7.67 -10.99 -0.08 10.82 16 9 O -0.54 -13.56 15.56 5.56 0.09 -13.48 16 10 N -0.59 -12.78 2.44 -176.43 -0.43 -13.21 16 11 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 12 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 13 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 16 Si 0.90 21.75 29.54 -169.99 -5.02 16.72 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C 0.19 3.25 5.74 -5.19 -0.03 3.22 16 21 C -0.03 -0.42 6.85 -35.63 -0.24 -0.67 16 22 C -0.20 -3.18 10.81 -39.70 -0.43 -3.60 16 23 C -0.21 -3.01 10.91 -39.70 -0.43 -3.45 16 24 C -0.05 -0.66 12.09 29.42 0.36 -0.30 16 25 O -0.17 -2.75 9.55 5.72 0.05 -2.70 16 26 N -0.29 -4.27 12.54 33.67 0.42 -3.85 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.17 0.99 8.06 -52.48 -0.42 0.56 16 31 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 33 H 0.09 1.40 8.08 -51.93 -0.42 0.98 16 34 H 0.09 1.30 7.40 -51.93 -0.38 0.91 16 35 H 0.10 1.60 6.92 -51.93 -0.36 1.24 16 36 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 37 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 39 H 0.11 1.88 8.07 -51.93 -0.42 1.46 16 40 H 0.08 1.22 6.44 -51.93 -0.33 0.88 16 41 H 0.15 2.39 8.06 -52.48 -0.42 1.97 16 42 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.20 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -36.12 373.13 -6.92 -43.04 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.07 Total: 3.42 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.05 Total: -5.21 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.45 Total: -47.42 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.14 Total: -16.17 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.12 -6.92 -43.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339585309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.529 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds