Wall clock time and date at job start Tue Mar 31 2020 11:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03602 * 2 1 4 4 C 1.35312 * 107.74772 * 180.15058 * 3 2 1 5 5 C 1.39869 * 107.91889 * 359.61173 * 4 3 2 6 6 C 1.50699 * 125.90295 * 180.22479 * 5 4 3 7 7 C 1.52991 * 109.47655 * 124.99832 * 6 5 4 8 8 C 1.50699 * 109.47655 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99400 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00412 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00017 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47373 * 89.99851 * 11 10 8 13 13 H 1.08003 * 119.99525 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00251 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00223 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99900 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47293 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47228 * 120.00297 * 16 14 12 19 19 H 1.48502 * 109.46809 * 239.99862 * 16 14 12 20 20 C 1.46499 * 120.00189 * 0.02562 * 10 8 7 21 21 C 1.50699 * 109.47261 * 89.99693 * 20 10 8 22 22 C 1.34514 * 125.78831 * 89.71469 * 21 20 10 23 23 C 1.41383 * 106.84379 * 179.89391 * 22 21 20 24 24 C 1.34516 * 106.83713 * 0.37488 * 23 22 21 25 25 O 1.34300 * 108.42186 * 359.77194 * 24 23 22 26 26 N 1.30837 * 108.20188 * 0.23962 * 5 4 3 27 27 H 1.08999 * 109.47098 * 270.25891 * 1 2 3 28 28 H 1.08998 * 109.47303 * 30.25669 * 1 2 3 29 29 H 1.08994 * 109.47129 * 150.25391 * 1 2 3 30 30 H 1.08008 * 126.12704 * 0.02562 * 3 2 1 31 31 H 1.08002 * 126.04491 * 179.88067 * 4 3 2 32 32 H 1.09002 * 109.46897 * 245.00208 * 6 5 4 33 33 H 1.09007 * 109.46619 * 4.99549 * 6 5 4 34 34 H 1.09002 * 109.47275 * 300.00144 * 7 6 5 35 35 H 1.09007 * 109.47338 * 60.00157 * 7 6 5 36 36 H 1.08996 * 109.47457 * 210.00081 * 11 10 8 37 37 H 1.09004 * 109.47064 * 330.00370 * 11 10 8 38 38 H 0.96998 * 120.00297 * 180.02562 * 15 14 12 39 39 H 1.08994 * 109.47130 * 210.00044 * 20 10 8 40 40 H 1.09006 * 109.46647 * 330.00129 * 20 10 8 41 41 H 1.08006 * 126.57806 * 0.02704 * 22 21 20 42 42 H 1.07995 * 126.58270 * 180.17219 * 23 22 21 43 43 H 1.07997 * 125.78987 * 179.75172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 3.5347 -0.7320 0.0035 6 6 4.7497 -1.6235 0.0075 7 6 4.6719 -2.5864 1.1938 8 6 5.8866 -3.4784 1.1974 9 8 6.7315 -3.3556 0.3361 10 7 6.0344 -4.4118 2.1582 11 6 7.2155 -5.2785 2.1620 12 6 8.3097 -4.6332 2.9729 13 1 8.1418 -3.6735 3.4392 14 6 9.5245 -5.2682 3.1204 15 7 9.7288 -6.4369 2.5530 16 14 10.8804 -4.4684 4.1261 17 1 10.4017 -3.1662 4.6554 18 1 11.2474 -5.3574 5.2576 19 1 12.0699 -4.2464 3.2652 20 6 5.0140 -4.5598 3.1990 21 6 3.9750 -5.5531 2.7462 22 6 4.0124 -6.8812 2.9559 23 6 2.8453 -7.4217 2.3686 24 6 2.1687 -6.3924 1.8280 25 8 2.8577 -5.2631 2.0597 26 7 2.2892 -1.1327 0.0055 27 1 -0.3633 0.0046 1.0276 28 1 -0.3634 0.8876 -0.5178 29 1 -0.3633 -0.8922 -0.5099 30 1 1.9281 2.1194 0.0004 31 1 4.4211 1.2964 -0.0061 32 1 4.7853 -2.1932 -0.9212 33 1 5.6483 -1.0125 0.0937 34 1 4.6362 -2.0168 2.1224 35 1 3.7733 -3.1974 1.1076 36 1 6.9578 -6.2421 2.6014 37 1 7.5609 -5.4265 1.1387 38 1 10.5833 -6.8838 2.6570 39 1 5.4808 -4.9155 4.1175 40 1 4.5395 -3.5957 3.3822 41 1 4.7846 -7.4294 3.4753 42 1 2.5546 -8.4617 2.3538 43 1 1.2308 -6.4624 1.2972 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339585309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:11 Heat of formation + Delta-G solvation = 35.562271 kcal Electronic energy + Delta-G solvation = -26190.190877 eV Core-core repulsion = 22431.272909 eV Total energy + Delta-G solvation = -3758.917968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.44655 -42.06510 -40.70182 -36.97687 -35.53985 -34.81912 -33.85657 -32.81555 -31.52191 -30.88851 -29.58867 -27.77452 -26.77551 -25.66088 -23.95544 -22.61380 -21.98926 -21.67440 -20.53431 -19.95858 -18.82538 -18.31337 -17.93459 -17.54489 -17.29082 -16.67926 -16.57782 -16.26156 -16.07649 -15.50499 -15.07536 -14.71011 -14.52422 -14.43195 -14.11627 -13.94994 -13.73098 -13.57733 -13.51492 -13.34700 -13.29957 -13.04691 -12.91582 -12.83553 -12.67327 -12.47570 -12.20711 -12.19654 -11.69552 -11.43490 -10.82676 -10.67922 -10.63022 -10.13216 -9.67508 -9.43833 -9.37941 -8.20576 -6.35046 0.75502 0.99790 1.39301 1.41683 1.53715 1.67061 1.72862 1.76275 1.84462 2.15394 2.36508 2.49418 3.09864 3.52117 3.71947 3.82898 3.93426 4.04453 4.14650 4.16714 4.21479 4.31908 4.35611 4.49436 4.54258 4.65402 4.71120 4.74498 4.88361 4.92369 4.99760 5.02326 5.04480 5.10013 5.19858 5.23254 5.24286 5.52805 5.63194 5.71518 5.80656 6.06845 6.23749 6.24976 6.62954 6.75251 6.81292 7.27429 7.42323 8.87491 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.003910 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.661889 B = 7159.453647 C = 9144.763897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.382 5.382 3 C 0.065 3.935 4 C -0.291 4.291 5 C 0.064 3.936 6 C -0.016 4.016 7 C -0.114 4.114 8 C 0.502 3.498 9 O -0.585 6.585 10 N -0.598 5.598 11 C 0.265 3.735 12 C -0.541 4.541 13 H 0.059 0.941 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.264 1.264 18 H -0.271 1.271 19 H -0.283 1.283 20 C 0.191 3.809 21 C -0.046 4.046 22 C -0.210 4.210 23 C -0.227 4.227 24 C -0.036 4.036 25 O -0.183 6.183 26 N -0.329 5.329 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.218 0.782 31 H 0.158 0.842 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.023 0.977 37 H -0.005 1.005 38 H 0.266 0.734 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.141 0.859 42 H 0.168 0.832 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.064 11.889 -0.411 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.165 5.165 3 C -0.081 4.081 4 C -0.320 4.320 5 C -0.101 4.101 6 C -0.056 4.056 7 C -0.154 4.154 8 C 0.292 3.708 9 O -0.466 6.466 10 N -0.329 5.329 11 C 0.144 3.856 12 C -0.579 4.579 13 H 0.078 0.922 14 C -0.191 4.191 15 N -0.569 5.569 16 Si 0.793 3.207 17 H -0.188 1.188 18 H -0.196 1.196 19 H -0.209 1.209 20 C 0.068 3.932 21 C -0.097 4.097 22 C -0.230 4.230 23 C -0.246 4.246 24 C -0.104 4.104 25 O -0.079 6.079 26 N -0.153 5.153 27 H 0.103 0.897 28 H 0.137 0.863 29 H 0.103 0.897 30 H 0.234 0.766 31 H 0.176 0.824 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.041 0.959 37 H 0.013 0.987 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.159 0.841 42 H 0.186 0.814 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -23.539 11.111 -0.955 26.047 hybrid contribution 1.702 0.059 0.269 1.724 sum -21.837 11.170 -0.686 24.537 Atomic orbital electron populations 1.22182 0.72027 1.05854 1.04552 1.48915 1.07947 1.03414 1.56184 1.23152 0.90249 0.94846 0.99870 1.21733 0.98768 0.93629 1.17859 1.22237 0.92808 0.94938 1.00152 1.19591 0.93057 0.95154 0.97754 1.21552 0.95413 0.97184 1.01276 1.21287 0.87984 0.81030 0.80502 1.90633 1.46013 1.70916 1.39042 1.48270 1.21815 1.35323 1.27449 1.18743 0.82211 0.89076 0.95576 1.21740 0.98773 1.05504 1.31888 0.92250 1.25867 1.00868 0.95401 0.96980 1.70073 1.25343 1.16301 1.45201 0.85343 0.78273 0.78807 0.78234 1.18759 1.19576 1.20923 1.20030 0.84338 0.98090 0.90753 1.23061 0.89251 0.96512 1.00855 1.21903 1.00900 0.93955 1.06232 1.22125 0.96217 1.01678 1.04601 1.24800 0.99789 0.82332 1.03462 1.84022 1.29769 1.35994 1.58113 1.77266 1.01834 1.09654 1.26527 0.89653 0.86265 0.89731 0.76587 0.82423 0.91487 0.89480 0.87420 0.88171 0.95909 0.98682 0.92467 0.86532 0.86931 0.84071 0.81417 0.74440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.90 11.47 127.77 1.47 2.36 16 2 N -0.38 -7.52 4.01 -369.57 -1.48 -9.00 16 3 C 0.07 1.08 11.49 83.54 0.96 2.04 16 4 C -0.29 -6.54 10.72 21.99 0.24 -6.30 16 5 C 0.06 1.81 6.49 43.10 0.28 2.09 16 6 C -0.02 -0.51 5.08 29.84 0.15 -0.36 16 7 C -0.11 -3.81 4.21 29.84 0.13 -3.69 16 8 C 0.50 22.37 7.67 87.66 0.67 23.04 16 9 O -0.59 -31.45 15.56 -3.03 -0.05 -31.50 16 10 N -0.60 -26.73 2.44 -830.50 -2.03 -28.76 16 11 C 0.26 14.64 5.16 85.63 0.44 15.08 16 12 C -0.54 -31.26 9.39 25.60 0.24 -31.02 16 13 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 14 C 0.01 0.45 5.46 84.65 0.46 0.91 16 15 N -0.93 -56.81 13.29 21.44 0.28 -56.53 16 16 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 17 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 20 C 0.19 6.55 5.74 85.63 0.49 7.04 16 21 C -0.05 -1.52 6.85 24.83 0.17 -1.35 16 22 C -0.21 -6.88 10.81 22.19 0.24 -6.64 16 23 C -0.23 -6.06 10.91 22.19 0.24 -5.82 16 24 C -0.04 -0.89 12.09 66.97 0.81 -0.08 16 25 O -0.18 -5.59 9.55 -2.46 -0.02 -5.62 16 26 N -0.33 -9.31 12.54 -47.39 -0.59 -9.90 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.22 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.07 2.36 8.10 -2.39 -0.02 2.34 16 33 H 0.09 2.80 8.08 -2.38 -0.02 2.78 16 34 H 0.11 3.14 7.40 -2.39 -0.02 3.12 16 35 H 0.10 3.32 6.92 -2.38 -0.02 3.30 16 36 H 0.02 1.28 8.07 -2.39 -0.02 1.27 16 37 H 0.00 -0.32 7.42 -2.38 -0.02 -0.34 16 38 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 39 H 0.12 3.90 8.07 -2.39 -0.02 3.88 16 40 H 0.11 3.16 6.44 -2.38 -0.02 3.15 16 41 H 0.14 4.74 8.06 -2.91 -0.02 4.71 16 42 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 43 H 0.24 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -82.69 373.13 6.13 -76.56 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 1.01 Total: 20.37 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 6.99 Total: -2.70 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -3.82 Total: -104.19 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.07 Total: -37.12 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -82.69 6.13 -76.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339585309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.119 kcal (2) G-P(sol) polarization free energy of solvation -82.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds