Wall clock time and date at job start Tue Mar 31 2020 11:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36882 * 126.39671 * 2 1 4 4 C 1.34664 * 106.81616 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.98853 * 180.02562 * 4 3 2 6 6 F 1.39898 * 109.47148 * 89.99244 * 5 4 3 7 7 F 1.39904 * 109.46944 * 209.99920 * 5 4 3 8 8 F 1.39902 * 109.46875 * 329.99174 * 5 4 3 9 9 N 1.34122 * 108.02208 * 359.77611 * 4 3 2 10 10 C 1.30503 * 109.25949 * 0.37170 * 9 4 3 11 11 C 1.50695 * 125.65513 * 179.89279 * 10 9 4 12 12 H 1.09002 * 109.50479 * 179.69424 * 11 10 9 13 13 C 1.53119 * 109.50187 * 299.77189 * 11 10 9 14 14 C 1.53119 * 109.15731 * 177.63352 * 13 11 10 15 15 C 1.53039 * 109.28129 * 302.34211 * 14 13 11 16 16 N 1.46848 * 109.51997 * 59.18522 * 15 14 13 17 17 C 1.46897 * 111.00171 * 174.16537 * 16 15 14 18 18 C 1.50703 * 109.46681 * 293.94843 * 17 16 15 19 19 H 1.08000 * 120.00022 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99996 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00120 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47146 * 90.00419 * 22 20 18 24 24 H 1.48501 * 109.46980 * 210.00333 * 22 20 18 25 25 H 1.48499 * 109.47209 * 329.99998 * 22 20 18 26 26 C 1.46855 * 111.19639 * 298.25566 * 16 15 14 27 27 H 1.09007 * 109.46907 * 269.97470 * 1 2 3 28 28 H 1.08995 * 109.47415 * 29.97760 * 1 2 3 29 29 H 1.09003 * 109.47312 * 149.97672 * 1 2 3 30 30 H 1.08000 * 126.58756 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.52613 * 297.53923 * 13 11 10 32 32 H 1.09004 * 109.52408 * 57.66768 * 13 11 10 33 33 H 1.08998 * 109.50840 * 62.28812 * 14 13 11 34 34 H 1.09004 * 109.50239 * 182.40921 * 14 13 11 35 35 H 1.09001 * 109.46699 * 179.19867 * 15 14 13 36 36 H 1.09003 * 109.46524 * 299.16842 * 15 14 13 37 37 H 1.08997 * 109.47484 * 53.94451 * 17 16 15 38 38 H 1.09002 * 109.47540 * 173.95120 * 17 16 15 39 39 H 0.96999 * 120.00103 * 179.97438 * 21 20 18 40 40 H 1.09003 * 109.46449 * 301.72795 * 26 16 15 41 41 H 1.08992 * 109.46444 * 181.76011 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 -0.0006 5 6 4.7890 1.5026 -0.0003 6 9 5.1739 1.7655 1.3188 7 9 5.8194 0.8245 -0.6604 8 9 4.5277 2.7088 -0.6590 9 7 3.5095 -0.6902 0.0041 10 6 2.2663 -1.0870 -0.0005 11 6 1.8018 -2.5206 0.0001 12 1 0.7122 -2.5501 0.0010 13 6 2.3314 -3.2301 -1.2492 14 6 1.9047 -4.7001 -1.2111 15 6 2.4332 -5.3466 0.0715 16 7 1.8976 -4.6326 1.2376 17 6 2.2719 -5.3089 2.4867 18 6 1.5980 -6.6554 2.5502 19 1 0.9562 -6.9767 1.7431 20 6 1.8016 -7.4776 3.6381 21 7 2.5835 -7.0866 4.6206 22 14 0.9669 -9.1469 3.7165 23 1 1.8451 -10.1692 3.0932 24 1 0.7154 -9.5084 5.1347 25 1 -0.3236 -9.0899 2.9840 26 6 2.3332 -3.2301 1.2476 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.9612 2.1345 -0.0004 31 1 1.9206 -2.7546 -2.1398 32 1 3.4193 -3.1660 -1.2709 33 1 0.8168 -4.7640 -1.2292 34 1 2.3149 -5.2207 -2.0765 35 1 2.1191 -6.3897 0.1086 36 1 3.5220 -5.2947 0.0824 37 1 3.3533 -5.4421 2.5179 38 1 1.9556 -4.7039 3.3364 39 1 2.7264 -7.6649 5.3861 40 1 3.4224 -3.1882 1.2531 41 1 1.9465 -2.7361 2.1389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343732393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:26 Heat of formation + Delta-G solvation = -94.109388 kcal Electronic energy + Delta-G solvation = -26999.775949 eV Core-core repulsion = 22693.378256 eV Total energy + Delta-G solvation = -4306.397693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.12639 -47.70049 -47.56856 -42.57772 -38.34259 -34.57558 -33.94624 -32.19335 -31.44478 -29.33094 -27.94569 -27.01653 -25.50684 -23.87702 -22.98729 -21.58407 -21.42109 -20.10391 -19.08560 -18.51563 -18.32045 -18.13430 -16.43168 -16.23789 -16.00995 -15.34830 -14.77058 -14.53822 -14.48942 -14.33142 -14.09767 -14.06618 -13.98745 -13.77296 -13.76195 -13.53381 -13.40643 -13.19759 -12.87309 -12.62222 -12.36961 -12.09810 -11.92337 -11.25398 -10.98209 -10.80459 -10.67737 -10.49191 -10.31904 -10.23786 -10.08537 -10.02629 -9.74348 -9.19689 -8.78225 -8.44061 -7.26004 -6.02517 -4.04277 1.51406 2.24847 2.54375 2.66832 3.31425 3.37744 3.41271 3.61284 3.96189 4.26896 4.42058 4.43945 4.45008 4.55049 4.77283 4.85836 5.05646 5.08527 5.11182 5.27549 5.32884 5.40578 5.56246 5.72063 5.85162 5.91932 6.02368 6.15490 6.18723 6.28165 6.30653 6.44924 6.72261 6.73840 6.76441 7.29722 7.36949 7.68171 7.79002 8.08187 8.19371 8.53270 9.03305 9.59898 11.08343 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.003030 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.920550 B = 9239.524225 C = 9649.815520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.452 5.452 3 C 0.009 3.991 4 C -0.097 4.097 5 C 0.557 3.443 6 F -0.175 7.175 7 F -0.168 7.168 8 F -0.178 7.178 9 N -0.449 5.449 10 C 0.244 3.756 11 C 0.001 3.999 12 H 0.093 0.907 13 C -0.105 4.105 14 C -0.115 4.115 15 C 0.061 3.939 16 N -0.536 5.536 17 C 0.194 3.806 18 C -0.507 4.507 19 H 0.064 0.936 20 C 0.055 3.945 21 N -0.898 5.898 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.070 3.930 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.187 0.813 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.023 0.977 37 H -0.007 1.007 38 H 0.029 0.971 39 H 0.261 0.739 40 H 0.037 0.963 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 18.253 -12.401 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.131 5.131 3 C -0.128 4.128 4 C -0.228 4.228 5 C 0.501 3.499 6 F -0.156 7.156 7 F -0.150 7.150 8 F -0.160 7.160 9 N -0.165 5.165 10 C -0.020 4.020 11 C -0.020 4.020 12 H 0.111 0.889 13 C -0.143 4.143 14 C -0.153 4.153 15 C -0.067 4.067 16 N -0.261 5.261 17 C 0.069 3.931 18 C -0.546 4.546 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.060 4.060 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.204 0.796 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.041 0.959 37 H 0.010 0.990 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.275 17.691 -12.235 21.758 hybrid contribution -0.010 -0.027 0.346 0.348 sum -3.285 17.663 -11.889 21.544 Atomic orbital electron populations 1.22230 0.75402 1.05274 1.04671 1.45490 1.08352 1.06080 1.53204 1.22280 0.89672 0.93310 1.07565 1.20207 0.91946 0.92877 1.17729 1.16954 0.82139 0.77075 0.73731 1.93225 1.92043 1.94213 1.36130 1.93216 1.61045 1.79811 1.80880 1.93174 1.94117 1.47351 1.81313 1.70025 1.19435 1.08467 1.18566 1.23565 0.84432 0.91341 1.02665 1.19796 1.00632 0.83321 0.98258 0.88934 1.21565 1.01747 0.95905 0.95109 1.21633 1.01490 0.94215 0.98001 1.21985 0.96192 0.99238 0.89329 1.62043 1.59501 0.99724 1.04784 1.19701 0.94481 0.93835 0.85045 1.21144 1.28241 1.00403 1.04807 0.91798 1.24995 0.95467 0.98541 0.95626 1.69962 1.37681 1.37285 1.08800 0.86509 0.79852 0.83972 0.77142 1.20735 1.21303 1.19785 1.21896 0.98087 0.91176 0.94840 0.89521 0.89154 0.88495 0.79557 0.92573 0.91031 0.91399 0.91844 0.89647 0.95925 0.98955 0.95259 0.92908 0.94433 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 10.83 59.85 0.65 1.05 16 2 N -0.45 -4.76 3.15 -121.28 -0.38 -5.15 16 3 C 0.01 0.10 11.15 -16.56 -0.18 -0.09 16 4 C -0.10 -1.33 6.44 -82.85 -0.53 -1.86 16 5 C 0.56 7.22 3.54 36.01 0.13 7.35 16 6 F -0.17 -2.37 17.30 2.25 0.04 -2.33 16 7 F -0.17 -2.43 17.27 2.25 0.04 -2.39 16 8 F -0.18 -1.98 17.01 2.25 0.04 -1.94 16 9 N -0.45 -7.16 11.20 -7.07 -0.08 -7.23 16 10 C 0.24 3.38 6.42 -155.41 -1.00 2.38 16 11 C 0.00 0.01 2.68 -91.69 -0.25 -0.24 16 12 H 0.09 1.16 6.73 -51.93 -0.35 0.81 16 13 C -0.10 -1.43 5.27 -26.61 -0.14 -1.57 16 14 C -0.12 -1.66 6.09 -26.65 -0.16 -1.82 16 15 C 0.06 1.15 5.30 -3.83 -0.02 1.13 16 16 N -0.54 -11.19 4.65 -236.11 -1.10 -12.29 16 17 C 0.19 5.03 4.72 -4.98 -0.02 5.01 16 18 C -0.51 -14.00 8.43 -34.44 -0.29 -14.29 16 19 H 0.06 1.72 7.14 -52.49 -0.37 1.35 16 20 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 22 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.07 1.27 4.73 -3.83 -0.02 1.25 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.53 7.05 -51.93 -0.37 0.17 16 30 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.74 6.72 -51.93 -0.35 1.39 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 38 H 0.03 0.81 7.98 -51.93 -0.41 0.40 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 LS Contribution 349.02 15.07 5.26 5.26 Total: -1.00 -32.24 349.02 -8.04 -40.28 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -5.63 Total: -4.38 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.94 Total: -0.25 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.82 Total: -50.59 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.12 Total: -6.66 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.24 -8.04 -40.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343732393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.834 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds