Wall clock time and date at job start Tue Mar 31 2020 11:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36882 * 126.39671 * 2 1 4 4 C 1.34664 * 106.81616 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.98853 * 180.02562 * 4 3 2 6 6 F 1.39898 * 109.47148 * 89.99244 * 5 4 3 7 7 F 1.39904 * 109.46944 * 209.99920 * 5 4 3 8 8 F 1.39902 * 109.46875 * 329.99174 * 5 4 3 9 9 N 1.34122 * 108.02208 * 359.77611 * 4 3 2 10 10 C 1.30503 * 109.25949 * 0.37170 * 9 4 3 11 11 C 1.50695 * 125.65513 * 179.89279 * 10 9 4 12 12 H 1.09002 * 109.50479 * 179.69424 * 11 10 9 13 13 C 1.53119 * 109.50187 * 299.77189 * 11 10 9 14 14 C 1.53119 * 109.15731 * 177.63352 * 13 11 10 15 15 C 1.53039 * 109.28129 * 302.34211 * 14 13 11 16 16 N 1.46848 * 109.51997 * 59.18522 * 15 14 13 17 17 C 1.46897 * 111.00171 * 174.16537 * 16 15 14 18 18 C 1.50703 * 109.46681 * 293.94843 * 17 16 15 19 19 H 1.08000 * 120.00022 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99996 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00120 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99986 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47146 * 90.00419 * 22 20 18 24 24 H 1.48501 * 109.46980 * 210.00333 * 22 20 18 25 25 H 1.48499 * 109.47209 * 329.99998 * 22 20 18 26 26 C 1.46855 * 111.19639 * 298.25566 * 16 15 14 27 27 H 1.09007 * 109.46907 * 269.97470 * 1 2 3 28 28 H 1.08995 * 109.47415 * 29.97760 * 1 2 3 29 29 H 1.09003 * 109.47312 * 149.97672 * 1 2 3 30 30 H 1.08000 * 126.58756 * 359.97438 * 3 2 1 31 31 H 1.08999 * 109.52613 * 297.53923 * 13 11 10 32 32 H 1.09004 * 109.52408 * 57.66768 * 13 11 10 33 33 H 1.08998 * 109.50840 * 62.28812 * 14 13 11 34 34 H 1.09004 * 109.50239 * 182.40921 * 14 13 11 35 35 H 1.09001 * 109.46699 * 179.19867 * 15 14 13 36 36 H 1.09003 * 109.46524 * 299.16842 * 15 14 13 37 37 H 1.08997 * 109.47484 * 53.94451 * 17 16 15 38 38 H 1.09002 * 109.47540 * 173.95120 * 17 16 15 39 39 H 0.96999 * 120.00103 * 179.97438 * 21 20 18 40 40 H 1.09003 * 109.46449 * 301.72795 * 26 16 15 41 41 H 1.08992 * 109.46444 * 181.76011 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5460 0.6505 -0.0006 5 6 4.7890 1.5026 -0.0003 6 9 5.1739 1.7655 1.3188 7 9 5.8194 0.8245 -0.6604 8 9 4.5277 2.7088 -0.6590 9 7 3.5095 -0.6902 0.0041 10 6 2.2663 -1.0870 -0.0005 11 6 1.8018 -2.5206 0.0001 12 1 0.7122 -2.5501 0.0010 13 6 2.3314 -3.2301 -1.2492 14 6 1.9047 -4.7001 -1.2111 15 6 2.4332 -5.3466 0.0715 16 7 1.8976 -4.6326 1.2376 17 6 2.2719 -5.3089 2.4867 18 6 1.5980 -6.6554 2.5502 19 1 0.9562 -6.9767 1.7431 20 6 1.8016 -7.4776 3.6381 21 7 2.5835 -7.0866 4.6206 22 14 0.9669 -9.1469 3.7165 23 1 1.8451 -10.1692 3.0932 24 1 0.7154 -9.5084 5.1347 25 1 -0.3236 -9.0899 2.9840 26 6 2.3332 -3.2301 1.2476 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3634 0.8901 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 1.9612 2.1345 -0.0004 31 1 1.9206 -2.7546 -2.1398 32 1 3.4193 -3.1660 -1.2709 33 1 0.8168 -4.7640 -1.2292 34 1 2.3149 -5.2207 -2.0765 35 1 2.1191 -6.3897 0.1086 36 1 3.5220 -5.2947 0.0824 37 1 3.3533 -5.4421 2.5179 38 1 1.9556 -4.7039 3.3364 39 1 2.7264 -7.6649 5.3861 40 1 3.4224 -3.1882 1.2531 41 1 1.9465 -2.7361 2.1389 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343732393.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:25 Heat of formation + Delta-G solvation = -114.497921 kcal Electronic energy + Delta-G solvation = -27000.660062 eV Core-core repulsion = 22693.378256 eV Total energy + Delta-G solvation = -4307.281806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.13141 -48.66766 -48.63124 -43.49269 -39.81065 -35.70886 -35.34808 -34.01233 -32.75297 -30.49438 -28.99797 -28.59575 -26.48711 -25.57111 -24.27713 -23.17456 -22.41934 -21.32111 -20.34482 -19.52760 -19.25828 -19.14962 -18.44704 -17.27894 -16.87088 -16.84184 -16.15642 -15.90364 -15.54258 -15.53750 -15.44151 -15.23352 -15.07910 -14.90535 -14.80607 -14.79031 -14.53913 -14.26486 -14.00425 -13.78184 -13.63130 -13.44163 -13.31981 -13.02435 -12.64356 -12.57458 -12.23610 -12.10251 -11.73421 -11.65643 -11.36140 -11.26788 -11.08775 -10.86215 -10.61627 -9.76267 -9.08053 -8.19691 -6.30586 0.66376 1.42154 1.43064 1.44478 1.51464 1.56223 1.76074 2.41289 2.62982 3.01494 3.11157 3.15960 3.42944 3.50905 3.73003 3.85083 3.97776 3.99305 4.16614 4.24653 4.32100 4.37851 4.45271 4.59060 4.73005 4.75102 4.82329 4.88037 4.95455 5.06784 5.10988 5.18432 5.20301 5.23934 5.31211 5.50370 5.65734 5.92322 6.03859 6.31309 6.58788 6.74229 6.85940 7.39459 8.91982 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.003030 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.920550 B = 9239.524225 C = 9649.815520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.443 5.443 3 C 0.041 3.959 4 C -0.137 4.137 5 C 0.559 3.441 6 F -0.182 7.182 7 F -0.182 7.182 8 F -0.165 7.165 9 N -0.492 5.492 10 C 0.226 3.774 11 C 0.014 3.986 12 H 0.117 0.883 13 C -0.099 4.099 14 C -0.103 4.103 15 C 0.058 3.942 16 N -0.531 5.531 17 C 0.208 3.792 18 C -0.520 4.520 19 H 0.070 0.930 20 C -0.002 4.002 21 N -0.938 5.938 22 Si 0.973 3.027 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.259 1.259 26 C 0.074 3.926 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.106 0.894 30 H 0.231 0.769 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.004 0.996 37 H -0.046 1.046 38 H 0.001 0.999 39 H 0.264 0.736 40 H 0.009 0.991 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 19.110 -14.371 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.122 5.122 3 C -0.099 4.099 4 C -0.266 4.266 5 C 0.504 3.496 6 F -0.164 7.164 7 F -0.164 7.164 8 F -0.146 7.146 9 N -0.210 5.210 10 C -0.039 4.039 11 C -0.006 4.006 12 H 0.135 0.865 13 C -0.137 4.137 14 C -0.140 4.140 15 C -0.070 4.070 16 N -0.255 5.255 17 C 0.081 3.919 18 C -0.558 4.558 19 H 0.089 0.911 20 C -0.199 4.199 21 N -0.579 5.579 22 Si 0.797 3.203 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.183 1.183 26 C -0.055 4.055 27 H 0.111 0.889 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.247 0.753 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.022 0.978 37 H -0.029 1.029 38 H 0.020 0.980 39 H 0.072 0.928 40 H 0.027 0.973 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.126 18.562 -14.234 24.180 hybrid contribution 0.903 -0.192 0.982 1.348 sum -5.223 18.369 -13.252 23.245 Atomic orbital electron populations 1.22651 0.72453 1.07525 1.05836 1.45724 1.09963 1.04975 1.51505 1.22929 0.88387 0.94817 1.03718 1.20410 0.93299 0.92351 1.20515 1.16955 0.81874 0.77428 0.73373 1.93206 1.92155 1.94281 1.36726 1.93180 1.61803 1.80255 1.81142 1.93190 1.93973 1.46486 1.80987 1.69895 1.21270 1.10229 1.19581 1.23221 0.84605 0.91771 1.04332 1.19603 1.01704 0.83498 0.95833 0.86483 1.21521 1.00601 0.95475 0.96111 1.21568 1.02250 0.94481 0.95723 1.22065 0.95269 0.98822 0.90828 1.62009 1.59250 1.00868 1.03397 1.19364 0.91864 0.93834 0.86819 1.21455 1.28242 1.01022 1.05068 0.91142 1.25988 0.96000 1.02888 0.95073 1.70113 1.39200 1.39025 1.09559 0.85327 0.79147 0.78513 0.77303 1.19961 1.20989 1.18274 1.21862 0.96485 0.89947 0.97231 0.88853 0.85721 0.87589 0.75285 0.89318 0.93149 0.89869 0.89458 0.91312 0.97801 1.02866 0.98044 0.92750 0.97280 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 10.83 127.77 1.38 1.82 16 2 N -0.44 -8.01 3.15 -537.61 -1.69 -9.71 16 3 C 0.04 0.73 11.15 83.09 0.93 1.65 16 4 C -0.14 -3.60 6.44 41.39 0.27 -3.33 16 5 C 0.56 14.33 3.54 71.24 0.25 14.58 16 6 F -0.18 -4.97 17.30 44.97 0.78 -4.19 16 7 F -0.18 -5.40 17.27 44.97 0.78 -4.63 16 8 F -0.17 -3.42 17.01 44.97 0.77 -2.65 16 9 N -0.49 -15.76 11.20 -176.29 -1.97 -17.74 16 10 C 0.23 5.97 6.42 138.13 0.89 6.86 16 11 C 0.01 0.38 2.68 -11.49 -0.03 0.35 16 12 H 0.12 2.60 6.73 -2.39 -0.02 2.58 16 13 C -0.10 -2.52 5.27 30.67 0.16 -2.36 16 14 C -0.10 -2.75 6.09 30.65 0.19 -2.56 16 15 C 0.06 2.24 5.30 86.33 0.46 2.70 16 16 N -0.53 -22.94 4.65 -900.90 -4.19 -27.13 16 17 C 0.21 11.39 4.72 85.56 0.40 11.79 16 18 C -0.52 -29.40 8.43 25.60 0.22 -29.19 16 19 H 0.07 3.82 7.14 -2.91 -0.02 3.80 16 20 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 21 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 22 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 26 C 0.07 2.82 4.73 86.32 0.41 3.22 16 27 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.11 0.69 7.05 -2.39 -0.02 0.68 16 30 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.07 2.84 6.72 -2.39 -0.02 2.83 16 36 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 37 H -0.05 -2.84 8.12 -2.39 -0.02 -2.86 16 38 H 0.00 0.09 7.98 -2.39 -0.02 0.07 16 39 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.05 2.16 8.01 -2.39 -0.02 2.14 16 Total: -1.00 -74.70 349.02 3.80 -70.90 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: 1.04 Total: 0.45 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 5.98 Total: 5.90 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -7.57 Total: -111.82 kcal Atomic # 9 Polarization: -13.79 SS G_CDS: 2.32 Total: -11.47 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -74.70 3.80 -70.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343732393.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.597 kcal (2) G-P(sol) polarization free energy of solvation -74.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds