Wall clock time and date at job start Tue Mar 31 2020 11:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36874 * 126.39751 * 2 1 4 4 C 1.34669 * 106.81997 * 180.24673 * 3 2 1 5 5 C 1.50704 * 125.99199 * 179.71567 * 4 3 2 6 6 F 1.39896 * 109.47259 * 185.00482 * 5 4 3 7 7 F 1.39897 * 109.47031 * 305.00768 * 5 4 3 8 8 F 1.39903 * 109.46703 * 65.00691 * 5 4 3 9 9 N 1.34126 * 108.02024 * 359.74483 * 4 3 2 10 10 C 1.30500 * 109.25505 * 359.97438 * 9 4 3 11 11 C 1.50702 * 125.65267 * 179.97438 * 10 9 4 12 12 H 1.08998 * 109.50335 * 179.97438 * 11 10 9 13 13 C 1.53117 * 109.53255 * 59.84710 * 11 10 9 14 14 C 1.53119 * 109.16405 * 182.38376 * 13 11 10 15 15 C 1.53043 * 109.27293 * 57.65542 * 14 13 11 16 16 N 1.46846 * 109.52705 * 300.82276 * 15 14 13 17 17 C 1.46901 * 110.99940 * 185.84048 * 16 15 14 18 18 C 1.50695 * 109.47025 * 300.69388 * 17 16 15 19 19 H 1.07995 * 120.00145 * 354.72249 * 18 17 16 20 20 C 1.37875 * 119.99857 * 174.99821 * 18 17 16 21 21 N 1.31517 * 119.99985 * 359.72866 * 20 18 17 22 22 Si 1.86802 * 120.00298 * 179.72315 * 20 18 17 23 23 H 1.48501 * 109.46608 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47144 * 119.99985 * 22 20 18 25 25 H 1.48494 * 109.47494 * 240.00240 * 22 20 18 26 26 C 1.46846 * 111.19666 * 61.73864 * 16 15 14 27 27 H 1.09001 * 109.47218 * 270.18712 * 1 2 3 28 28 H 1.08995 * 109.47340 * 30.19225 * 1 2 3 29 29 H 1.09003 * 109.46661 * 150.19275 * 1 2 3 30 30 H 1.08003 * 126.59365 * 0.02562 * 3 2 1 31 31 H 1.08997 * 109.52455 * 302.29452 * 13 11 10 32 32 H 1.09002 * 109.52286 * 62.48350 * 13 11 10 33 33 H 1.08994 * 109.50832 * 177.59432 * 14 13 11 34 34 H 1.08998 * 109.50593 * 297.68082 * 14 13 11 35 35 H 1.08998 * 109.46091 * 180.80335 * 15 14 13 36 36 H 1.09001 * 109.46173 * 60.84085 * 15 14 13 37 37 H 1.09006 * 109.46836 * 180.69307 * 17 16 15 38 38 H 1.09000 * 109.47144 * 60.69704 * 17 16 15 39 39 H 0.97005 * 120.00330 * 180.02562 * 21 20 18 40 40 H 1.09006 * 109.45826 * 58.27810 * 26 16 15 41 41 H 1.09003 * 109.46067 * 178.25300 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6505 -0.0056 5 6 4.7890 1.5026 -0.0137 6 9 5.9160 0.6823 -0.1328 7 9 4.7402 2.3880 -1.0957 8 9 4.8646 2.2284 1.1799 9 7 3.5096 -0.6903 -0.0032 10 6 2.2664 -1.0870 0.0042 11 6 1.8018 -2.5206 0.0085 12 1 0.7123 -2.5501 0.0150 13 6 2.3405 -3.2296 1.2542 14 6 1.9136 -4.6997 1.2199 15 6 2.4327 -5.3466 -0.0663 16 7 1.8887 -4.6331 -1.2287 17 6 2.2538 -5.3101 -2.4802 18 6 3.7549 -5.3768 -2.5957 19 1 4.3754 -4.8843 -1.8617 20 6 4.3360 -6.0618 -3.6417 21 7 3.5804 -6.6615 -4.5356 22 14 6.1966 -6.1380 -3.7893 23 1 6.8134 -5.3885 -2.6654 24 1 6.6394 -7.5547 -3.7409 25 1 6.6163 -5.5320 -5.0783 26 6 2.3241 -3.2307 -1.2425 27 1 -0.3634 0.0034 1.0277 28 1 -0.3634 0.8882 -0.5168 29 1 -0.3633 -0.8918 -0.5109 30 1 1.9612 2.1345 0.0004 31 1 3.4285 -3.1664 1.2674 32 1 1.9362 -2.7537 2.1476 33 1 2.3300 -5.2198 2.0825 34 1 0.8258 -4.7635 1.2467 35 1 2.1183 -6.3897 -0.1006 36 1 3.5213 -5.2947 -0.0851 37 1 1.8487 -4.7541 -3.3257 38 1 1.8442 -6.3202 -2.4798 39 1 3.9892 -7.1437 -5.2713 40 1 3.4133 -3.1888 -1.2558 41 1 1.9307 -2.7370 -2.1311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343732394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:29 Heat of formation + Delta-G solvation = -93.935033 kcal Electronic energy + Delta-G solvation = -27411.861126 eV Core-core repulsion = 23105.470993 eV Total energy + Delta-G solvation = -4306.390132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.04084 -47.61334 -47.48242 -42.49815 -38.32571 -34.51189 -33.95738 -32.14044 -31.34763 -29.22649 -27.88075 -26.75785 -25.43064 -23.93524 -23.00850 -21.56252 -21.34800 -20.03634 -19.01550 -18.46408 -18.23883 -18.01311 -16.36615 -16.29313 -15.97884 -15.21267 -14.70541 -14.47984 -14.41282 -14.32795 -14.13259 -13.99318 -13.84328 -13.68708 -13.66540 -13.45513 -13.23748 -13.11629 -12.85150 -12.60561 -12.29825 -12.01599 -11.70702 -11.10346 -10.93718 -10.85313 -10.52240 -10.40271 -10.26302 -10.11062 -9.99397 -9.93640 -9.77853 -9.52768 -8.70584 -8.40980 -7.20470 -6.00796 -4.09271 1.58291 2.31878 2.63799 2.74711 3.30596 3.38941 3.45119 3.70032 4.05683 4.37123 4.45064 4.48956 4.50345 4.61120 4.80217 4.91916 5.09623 5.13897 5.20033 5.30485 5.35782 5.49392 5.63162 5.80733 5.92533 5.99689 6.11126 6.22340 6.24722 6.42048 6.46189 6.65544 6.78572 6.83603 6.91181 7.26722 7.53370 7.77767 7.91437 8.03776 8.26452 8.30442 9.01133 9.58224 11.04390 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.004329 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.298937 B = 6467.023989 C = 7815.361365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.453 5.453 3 C 0.008 3.992 4 C -0.097 4.097 5 C 0.555 3.445 6 F -0.164 7.164 7 F -0.177 7.177 8 F -0.179 7.179 9 N -0.445 5.445 10 C 0.245 3.755 11 C -0.002 4.002 12 H 0.088 0.912 13 C -0.104 4.104 14 C -0.115 4.115 15 C 0.061 3.939 16 N -0.541 5.541 17 C 0.188 3.812 18 C -0.548 4.548 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.892 5.892 22 Si 0.886 3.114 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.077 3.923 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.186 0.814 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.042 0.958 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.261 0.739 40 H 0.054 0.946 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.483 15.984 12.046 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.133 5.133 3 C -0.129 4.129 4 C -0.227 4.227 5 C 0.500 3.500 6 F -0.146 7.146 7 F -0.158 7.158 8 F -0.160 7.160 9 N -0.161 5.161 10 C -0.019 4.019 11 C -0.022 4.022 12 H 0.106 0.894 13 C -0.142 4.142 14 C -0.153 4.153 15 C -0.068 4.068 16 N -0.265 5.265 17 C 0.063 3.937 18 C -0.587 4.587 19 H 0.077 0.923 20 C -0.137 4.137 21 N -0.531 5.531 22 Si 0.714 3.286 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.053 4.053 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.203 0.797 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.438 15.370 11.903 20.814 hybrid contribution 1.456 0.756 -0.391 1.687 sum -5.982 16.127 11.512 20.697 Atomic orbital electron populations 1.22208 0.75584 1.05585 1.04158 1.45489 1.08253 1.06094 1.53425 1.22226 0.89717 0.93240 1.07760 1.20215 0.91943 0.92906 1.17621 1.16974 0.82379 0.77356 0.73339 1.93230 1.53618 1.72152 1.95552 1.93200 1.96610 1.70191 1.55846 1.93196 1.96651 1.78992 1.47186 1.70075 1.19365 1.08356 1.18296 1.23583 0.84423 0.91314 1.02575 1.19851 1.00227 0.83466 0.98691 0.89362 1.21536 1.01891 0.95721 0.95077 1.21637 1.01029 0.94506 0.98166 1.21887 0.98210 0.97412 0.89256 1.62447 1.58381 1.00876 1.04817 1.19742 0.94309 0.94428 0.85230 1.21802 0.93096 1.33358 1.10422 0.92263 1.24941 0.97988 0.95145 0.95611 1.69952 1.34957 1.34380 1.13828 0.86618 0.86060 0.77737 0.78175 1.19631 1.20965 1.20957 1.21779 0.99598 0.90166 0.93749 0.89936 0.89142 0.88339 0.79711 0.90902 0.92755 0.91966 0.91818 0.91485 0.93939 0.95578 0.94516 0.92917 0.92818 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 10.83 59.85 0.65 1.07 16 2 N -0.45 -5.04 3.15 -121.28 -0.38 -5.43 16 3 C 0.01 0.09 11.47 -16.56 -0.19 -0.10 16 4 C -0.10 -1.41 6.37 -82.85 -0.53 -1.94 16 5 C 0.56 7.77 3.48 36.01 0.13 7.89 16 6 F -0.16 -2.67 17.15 2.25 0.04 -2.63 16 7 F -0.18 -2.34 17.29 2.25 0.04 -2.30 16 8 F -0.18 -2.29 17.30 2.25 0.04 -2.25 16 9 N -0.44 -7.61 11.05 -7.07 -0.08 -7.69 16 10 C 0.25 3.60 6.42 -155.41 -1.00 2.60 16 11 C 0.00 -0.02 2.67 -91.69 -0.25 -0.27 16 12 H 0.09 1.11 6.73 -51.93 -0.35 0.76 16 13 C -0.10 -1.48 5.27 -26.61 -0.14 -1.62 16 14 C -0.12 -1.66 6.09 -26.65 -0.16 -1.82 16 15 C 0.06 1.15 5.03 -3.83 -0.02 1.13 16 16 N -0.54 -11.15 4.86 -236.11 -1.15 -12.29 16 17 C 0.19 4.77 5.12 -4.98 -0.03 4.75 16 18 C -0.55 -15.11 7.72 -34.44 -0.27 -15.37 16 19 H 0.06 1.66 5.86 -52.49 -0.31 1.35 16 20 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 21 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 22 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.08 1.47 4.38 -3.84 -0.02 1.45 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.62 7.05 -51.93 -0.37 0.25 16 30 H 0.19 1.32 8.06 -52.48 -0.42 0.90 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 36 H 0.04 0.90 6.73 -51.93 -0.35 0.55 16 37 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.05 1.21 6.86 -51.93 -0.36 0.85 16 41 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -32.08 346.14 -7.98 -40.06 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.51 Total: -3.58 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.91 Total: -0.47 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.87 Total: -50.98 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.12 Total: -7.19 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.08 -7.98 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343732394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.870 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds