Wall clock time and date at job start Tue Mar 31 2020 11:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36874 * 126.39751 * 2 1 4 4 C 1.34669 * 106.81997 * 180.24673 * 3 2 1 5 5 C 1.50704 * 125.99199 * 179.71567 * 4 3 2 6 6 F 1.39896 * 109.47259 * 185.00482 * 5 4 3 7 7 F 1.39897 * 109.47031 * 305.00768 * 5 4 3 8 8 F 1.39903 * 109.46703 * 65.00691 * 5 4 3 9 9 N 1.34126 * 108.02024 * 359.74483 * 4 3 2 10 10 C 1.30500 * 109.25505 * 359.97438 * 9 4 3 11 11 C 1.50702 * 125.65267 * 179.97438 * 10 9 4 12 12 H 1.08998 * 109.50335 * 179.97438 * 11 10 9 13 13 C 1.53117 * 109.53255 * 59.84710 * 11 10 9 14 14 C 1.53119 * 109.16405 * 182.38376 * 13 11 10 15 15 C 1.53043 * 109.27293 * 57.65542 * 14 13 11 16 16 N 1.46846 * 109.52705 * 300.82276 * 15 14 13 17 17 C 1.46901 * 110.99940 * 185.84048 * 16 15 14 18 18 C 1.50695 * 109.47025 * 300.69388 * 17 16 15 19 19 H 1.07995 * 120.00145 * 354.72249 * 18 17 16 20 20 C 1.37875 * 119.99857 * 174.99821 * 18 17 16 21 21 N 1.31517 * 119.99985 * 359.72866 * 20 18 17 22 22 Si 1.86802 * 120.00298 * 179.72315 * 20 18 17 23 23 H 1.48501 * 109.46608 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47144 * 119.99985 * 22 20 18 25 25 H 1.48494 * 109.47494 * 240.00240 * 22 20 18 26 26 C 1.46846 * 111.19666 * 61.73864 * 16 15 14 27 27 H 1.09001 * 109.47218 * 270.18712 * 1 2 3 28 28 H 1.08995 * 109.47340 * 30.19225 * 1 2 3 29 29 H 1.09003 * 109.46661 * 150.19275 * 1 2 3 30 30 H 1.08003 * 126.59365 * 0.02562 * 3 2 1 31 31 H 1.08997 * 109.52455 * 302.29452 * 13 11 10 32 32 H 1.09002 * 109.52286 * 62.48350 * 13 11 10 33 33 H 1.08994 * 109.50832 * 177.59432 * 14 13 11 34 34 H 1.08998 * 109.50593 * 297.68082 * 14 13 11 35 35 H 1.08998 * 109.46091 * 180.80335 * 15 14 13 36 36 H 1.09001 * 109.46173 * 60.84085 * 15 14 13 37 37 H 1.09006 * 109.46836 * 180.69307 * 17 16 15 38 38 H 1.09000 * 109.47144 * 60.69704 * 17 16 15 39 39 H 0.97005 * 120.00330 * 180.02562 * 21 20 18 40 40 H 1.09006 * 109.45826 * 58.27810 * 26 16 15 41 41 H 1.09003 * 109.46067 * 178.25300 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1017 0.0000 4 6 3.5460 0.6505 -0.0056 5 6 4.7890 1.5026 -0.0137 6 9 5.9160 0.6823 -0.1328 7 9 4.7402 2.3880 -1.0957 8 9 4.8646 2.2284 1.1799 9 7 3.5096 -0.6903 -0.0032 10 6 2.2664 -1.0870 0.0042 11 6 1.8018 -2.5206 0.0085 12 1 0.7123 -2.5501 0.0150 13 6 2.3405 -3.2296 1.2542 14 6 1.9136 -4.6997 1.2199 15 6 2.4327 -5.3466 -0.0663 16 7 1.8887 -4.6331 -1.2287 17 6 2.2538 -5.3101 -2.4802 18 6 3.7549 -5.3768 -2.5957 19 1 4.3754 -4.8843 -1.8617 20 6 4.3360 -6.0618 -3.6417 21 7 3.5804 -6.6615 -4.5356 22 14 6.1966 -6.1380 -3.7893 23 1 6.8134 -5.3885 -2.6654 24 1 6.6394 -7.5547 -3.7409 25 1 6.6163 -5.5320 -5.0783 26 6 2.3241 -3.2307 -1.2425 27 1 -0.3634 0.0034 1.0277 28 1 -0.3634 0.8882 -0.5168 29 1 -0.3633 -0.8918 -0.5109 30 1 1.9612 2.1345 0.0004 31 1 3.4285 -3.1664 1.2674 32 1 1.9362 -2.7537 2.1476 33 1 2.3300 -5.2198 2.0825 34 1 0.8258 -4.7635 1.2467 35 1 2.1183 -6.3897 -0.1006 36 1 3.5213 -5.2947 -0.0851 37 1 1.8487 -4.7541 -3.3257 38 1 1.8442 -6.3202 -2.4798 39 1 3.9892 -7.1437 -5.2713 40 1 3.4133 -3.1888 -1.2558 41 1 1.9307 -2.7370 -2.1311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343732394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:28 Heat of formation + Delta-G solvation = -114.442977 kcal Electronic energy + Delta-G solvation = -27412.750417 eV Core-core repulsion = 23105.470993 eV Total energy + Delta-G solvation = -4307.279424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.12384 -48.65274 -48.63009 -43.46455 -39.82984 -35.73227 -35.32823 -33.96949 -32.70966 -30.41476 -28.75630 -28.57576 -26.45163 -25.76260 -24.26361 -23.12928 -22.40262 -21.28058 -20.39418 -19.53050 -19.24955 -19.11279 -18.44649 -17.27801 -16.85622 -16.82908 -16.10441 -15.90597 -15.53606 -15.52363 -15.46506 -15.11344 -15.07568 -14.87654 -14.79605 -14.79136 -14.51937 -14.39997 -13.85832 -13.69590 -13.45868 -13.35189 -13.29316 -13.01731 -12.89455 -12.40786 -12.18074 -12.15335 -11.82603 -11.58349 -11.51978 -11.21314 -11.15464 -10.83412 -10.62965 -9.73096 -9.07059 -8.18549 -6.36619 0.68427 1.30845 1.33434 1.44392 1.45297 1.55253 1.77886 2.34514 2.64848 3.02655 3.06204 3.21521 3.44471 3.55574 3.75873 3.91286 4.00107 4.03364 4.21034 4.27112 4.38460 4.42672 4.51344 4.64745 4.75478 4.83871 4.91450 5.02677 5.03873 5.09936 5.17358 5.21947 5.26571 5.31093 5.34046 5.52093 5.73064 5.95514 6.04101 6.22755 6.51086 6.78640 6.84311 7.34535 8.83752 Molecular weight = 317.14amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.004329 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.298937 B = 6467.023989 C = 7815.361365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.443 5.443 3 C 0.041 3.959 4 C -0.138 4.138 5 C 0.558 3.442 6 F -0.185 7.185 7 F -0.173 7.173 8 F -0.172 7.172 9 N -0.494 5.494 10 C 0.226 3.774 11 C 0.012 3.988 12 H 0.120 0.880 13 C -0.099 4.099 14 C -0.102 4.102 15 C 0.059 3.941 16 N -0.530 5.530 17 C 0.200 3.800 18 C -0.555 4.555 19 H 0.048 0.952 20 C 0.017 3.983 21 N -0.922 5.922 22 Si 0.948 3.052 23 H -0.276 1.276 24 H -0.272 1.272 25 H -0.277 1.277 26 C 0.085 3.915 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.231 0.769 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.010 0.990 37 H 0.003 0.997 38 H 0.015 0.985 39 H 0.266 0.734 40 H 0.011 0.989 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 17.663 13.686 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.122 5.122 3 C -0.098 4.098 4 C -0.268 4.268 5 C 0.502 3.498 6 F -0.166 7.166 7 F -0.155 7.155 8 F -0.153 7.153 9 N -0.211 5.211 10 C -0.039 4.039 11 C -0.008 4.008 12 H 0.137 0.863 13 C -0.137 4.137 14 C -0.140 4.140 15 C -0.069 4.069 16 N -0.254 5.254 17 C 0.074 3.926 18 C -0.594 4.594 19 H 0.066 0.934 20 C -0.183 4.183 21 N -0.562 5.562 22 Si 0.773 3.227 23 H -0.201 1.201 24 H -0.197 1.197 25 H -0.203 1.203 26 C -0.045 4.045 27 H 0.125 0.875 28 H 0.137 0.863 29 H 0.117 0.883 30 H 0.247 0.753 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.218 17.050 13.558 23.653 hybrid contribution 1.961 0.299 -0.908 2.182 sum -7.257 17.349 12.650 22.664 Atomic orbital electron populations 1.22652 0.72396 1.07105 1.06270 1.45735 1.09978 1.04886 1.51583 1.22887 0.88347 0.94823 1.03763 1.20413 0.93342 0.92346 1.20650 1.16990 0.81900 0.77310 0.73584 1.93181 1.54823 1.72910 1.95700 1.93199 1.96554 1.69996 1.55729 1.93201 1.96601 1.78774 1.46761 1.69939 1.21448 1.10227 1.19495 1.23280 0.84553 0.91886 1.04190 1.19667 1.01660 0.83456 0.96043 0.86256 1.21500 1.00277 0.95775 0.96190 1.21572 1.02315 0.94299 0.95812 1.21973 0.96403 0.97703 0.90868 1.62409 1.57911 1.01528 1.03502 1.19413 0.92882 0.93357 0.86992 1.21986 0.94262 1.32979 1.10131 0.93412 1.25691 1.02298 0.94918 0.95368 1.70041 1.36719 1.35077 1.14393 0.85660 0.80884 0.78153 0.77958 1.20077 1.19685 1.20309 1.21664 0.97055 0.89538 0.96213 0.87467 0.86324 0.88268 0.75280 0.93767 0.89457 0.89776 0.89473 0.92058 0.97167 0.97846 0.96672 0.92533 0.97050 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.83 127.77 1.38 1.83 16 2 N -0.44 -8.44 3.15 -537.61 -1.69 -10.14 16 3 C 0.04 0.79 11.47 83.09 0.95 1.74 16 4 C -0.14 -3.91 6.37 41.39 0.26 -3.65 16 5 C 0.56 15.43 3.48 71.24 0.25 15.68 16 6 F -0.18 -6.22 17.15 44.97 0.77 -5.45 16 7 F -0.17 -4.44 17.29 44.97 0.78 -3.66 16 8 F -0.17 -4.24 17.30 44.97 0.78 -3.46 16 9 N -0.49 -17.00 11.05 -176.28 -1.95 -18.94 16 10 C 0.23 6.33 6.42 138.13 0.89 7.22 16 11 C 0.01 0.34 2.67 -11.49 -0.03 0.31 16 12 H 0.12 2.61 6.73 -2.39 -0.02 2.60 16 13 C -0.10 -2.66 5.27 30.67 0.16 -2.50 16 14 C -0.10 -2.74 6.09 30.65 0.19 -2.55 16 15 C 0.06 2.26 5.03 86.33 0.43 2.69 16 16 N -0.53 -22.41 4.86 -900.92 -4.38 -26.79 16 17 C 0.20 10.64 5.12 85.56 0.44 11.08 16 18 C -0.55 -31.96 7.72 25.60 0.20 -31.76 16 19 H 0.05 2.82 5.86 -2.91 -0.02 2.80 16 20 C 0.02 0.98 5.46 84.65 0.46 1.44 16 21 N -0.92 -55.67 13.29 21.45 0.28 -55.39 16 22 Si 0.95 46.18 29.54 68.60 2.03 48.21 16 23 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 C 0.08 3.36 4.38 86.32 0.38 3.74 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.10 0.84 7.05 -2.39 -0.02 0.83 16 30 H 0.23 2.11 8.06 -2.91 -0.02 2.08 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 36 H 0.01 0.45 6.73 -2.39 -0.02 0.43 16 37 H 0.00 0.19 8.08 -2.38 -0.02 0.17 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 40 H 0.01 0.54 6.86 -2.38 -0.02 0.52 16 41 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 Total: -1.00 -74.44 346.14 3.63 -70.81 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: 1.05 Total: -0.46 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.96 Total: 5.27 kcal Atomic # 7 Polarization: -103.52 SS G_CDS: -7.73 Total: -111.25 kcal Atomic # 9 Polarization: -14.90 SS G_CDS: 2.33 Total: -12.57 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -74.44 3.63 -70.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343732394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.636 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds