Wall clock time and date at job start Tue Mar 31 2020 11:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 120.00000 * 2 1 4 4 O 1.21586 * 120.00219 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00036 * 179.97438 * 3 2 1 6 6 C 1.40116 * 120.00178 * 185.31250 * 5 3 2 7 7 C 1.38879 * 120.00137 * 213.31354 * 6 5 3 8 8 C 1.38038 * 120.01872 * 179.97438 * 7 6 5 9 9 C 1.38873 * 119.98539 * 359.97438 * 8 7 6 10 10 C 1.38860 * 119.98190 * 0.02562 * 9 8 7 11 11 C 1.38037 * 120.04236 * 359.97438 * 10 9 8 12 12 C 1.50678 * 119.83738 * 180.02562 * 10 9 8 13 13 C 1.52901 * 109.52331 * 326.03402 * 12 10 9 14 14 C 1.50472 * 109.92591 * 48.65394 * 13 12 10 15 15 O 1.21287 * 119.62769 * 144.76473 * 14 13 12 16 16 N 1.34557 * 120.75051 * 324.76638 * 14 13 12 17 17 C 1.46508 * 119.77621 * 180.78163 * 16 14 13 18 18 C 1.52995 * 109.47105 * 270.01896 * 17 16 14 19 19 C 1.50704 * 109.46974 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00040 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99854 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00084 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00094 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47473 * 89.99836 * 23 21 19 25 25 H 1.48500 * 109.47141 * 209.99760 * 23 21 19 26 26 H 1.48498 * 109.47289 * 329.99879 * 23 21 19 27 27 H 1.08997 * 109.47044 * 300.00510 * 1 2 3 28 28 H 1.08998 * 109.46559 * 60.00174 * 1 2 3 29 29 H 1.08994 * 109.46827 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99902 * 179.97438 * 2 1 3 31 31 H 0.97004 * 119.99872 * 5.31627 * 5 3 2 32 32 H 1.08005 * 119.99063 * 0.02562 * 7 6 5 33 33 H 1.07997 * 120.00650 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.01971 * 180.02562 * 11 10 9 35 35 H 1.08997 * 109.46176 * 86.04847 * 12 10 9 36 36 H 1.08992 * 109.45642 * 206.02323 * 12 10 9 37 37 H 1.09002 * 109.39850 * 168.77952 * 13 12 10 38 38 H 1.09006 * 109.40156 * 288.51411 * 13 12 10 39 39 H 1.08999 * 109.46593 * 30.02451 * 17 16 14 40 40 H 1.09004 * 109.46841 * 150.02081 * 17 16 14 41 41 H 1.09001 * 109.47234 * 300.00213 * 18 17 16 42 42 H 1.09004 * 109.47120 * 60.00356 * 18 17 16 43 43 H 0.96998 * 120.00273 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.1873 2.3754 0.1129 7 6 5.4051 2.5348 -0.5353 8 6 6.0954 3.7252 -0.4253 9 6 5.5714 4.7637 0.3333 10 6 4.3537 4.6040 0.9812 11 6 3.6633 3.4138 0.8714 12 6 3.7880 5.7332 1.8030 13 6 4.9298 6.5071 2.4627 14 6 5.9858 6.8327 1.4415 15 8 6.5890 7.8823 1.5164 16 7 6.2687 5.9727 0.4460 17 6 7.3130 6.3037 -0.5268 18 6 6.6934 7.0638 -1.7012 19 6 7.7678 7.4049 -2.7016 20 1 8.7900 7.1088 -2.5182 21 6 7.4455 8.0949 -3.8509 22 7 8.3829 8.3922 -4.7241 23 14 5.6775 8.6077 -4.1677 24 1 5.4415 9.9550 -3.5895 25 1 5.4280 8.6465 -5.6311 26 1 4.7572 7.6293 -3.5345 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.9500 -0.8401 0.0004 31 1 3.9717 0.3307 -0.0769 32 1 5.8120 1.7275 -1.1262 33 1 7.0422 3.8491 -0.9297 34 1 2.7160 3.2901 1.3751 35 1 3.2205 6.4034 1.1573 36 1 3.1313 5.3284 2.5729 37 1 4.5414 7.4320 2.8890 38 1 5.3678 5.9004 3.2555 39 1 8.0697 6.9264 -0.0496 40 1 7.7745 5.3858 -0.8909 41 1 5.9366 6.4411 -2.1783 42 1 6.2319 7.9817 -1.3371 43 1 8.1563 8.8780 -5.5325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347750209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:07 Heat of formation + Delta-G solvation = -32.684350 kcal Electronic energy + Delta-G solvation = -26391.356704 eV Core-core repulsion = 22629.479341 eV Total energy + Delta-G solvation = -3761.877363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.11313 -40.36620 -38.39823 -36.06273 -35.00031 -34.87196 -33.66469 -32.85499 -30.54258 -29.83541 -28.78600 -26.60677 -25.61392 -24.28919 -22.81313 -22.20318 -21.08698 -20.47261 -19.08726 -18.84418 -17.72289 -17.02667 -16.91128 -16.15824 -15.75113 -15.67361 -15.17412 -14.79139 -14.59642 -14.22977 -14.15589 -13.82194 -13.65269 -13.38191 -13.14039 -13.11502 -12.84515 -12.63514 -12.57062 -12.39982 -11.84877 -11.72108 -11.49399 -11.06603 -10.92529 -10.86416 -10.48477 -10.23451 -10.03385 -9.83640 -9.55490 -9.52420 -9.23598 -9.06817 -8.72849 -8.52972 -7.33419 -6.04750 -4.03587 1.23052 1.43121 2.33439 2.73416 2.99026 3.20925 3.34971 3.41296 3.47411 3.84853 3.89752 4.47457 4.53886 4.71273 4.78021 4.82655 5.02001 5.13082 5.16223 5.26146 5.30099 5.30892 5.41702 5.46190 5.66215 5.75037 5.84964 5.93035 5.96250 6.06369 6.07414 6.13555 6.27621 6.33143 6.48486 6.58692 6.66048 6.78866 6.99631 7.25946 7.31107 7.59582 7.71274 7.77703 8.24098 8.33567 8.49278 8.97554 9.57583 11.08172 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.003737 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.798832 B = 7490.848555 C = 8520.376340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.749 5.749 3 C 0.699 3.301 4 O -0.570 6.570 5 N -0.682 5.682 6 C 0.128 3.872 7 C -0.113 4.113 8 C -0.129 4.129 9 C 0.164 3.836 10 C -0.112 4.112 11 C -0.083 4.083 12 C -0.073 4.073 13 C -0.136 4.136 14 C 0.512 3.488 15 O -0.521 6.521 16 N -0.549 5.549 17 C 0.115 3.885 18 C -0.022 4.022 19 C -0.519 4.519 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.901 5.901 23 Si 0.877 3.123 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.398 0.602 31 H 0.405 0.595 32 H 0.129 0.871 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.019 0.981 42 H 0.017 0.983 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 -21.319 14.036 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.405 5.405 3 C 0.400 3.600 4 O -0.446 6.446 5 N -0.330 5.330 6 C 0.034 3.966 7 C -0.134 4.134 8 C -0.150 4.150 9 C 0.067 3.933 10 C -0.116 4.116 11 C -0.104 4.104 12 C -0.111 4.111 13 C -0.176 4.176 14 C 0.301 3.699 15 O -0.396 6.396 16 N -0.271 5.271 17 C -0.005 4.005 18 C -0.060 4.060 19 C -0.557 4.557 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.539 5.539 23 Si 0.704 3.296 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.231 0.769 31 H 0.240 0.760 32 H 0.147 0.853 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.784 -19.622 13.932 27.733 hybrid contribution -0.454 -0.609 -0.589 0.961 sum -14.238 -20.230 13.343 28.107 Atomic orbital electron populations 1.21428 0.77758 1.02092 1.02564 1.44917 1.07965 1.06979 1.80606 1.15964 0.81516 0.84538 0.78011 1.90978 1.67473 1.29940 1.56185 1.42494 1.04753 1.08667 1.77104 1.17287 0.93288 0.86636 0.99412 1.20618 0.95082 0.98072 0.99664 1.20756 1.01390 0.91515 1.01300 1.17750 0.91435 0.86257 0.97824 1.19355 0.93609 0.96387 1.02231 1.20689 0.99902 0.91655 0.98156 1.20377 0.97021 0.95003 0.98649 1.21691 0.95201 1.03089 0.97659 1.20628 0.84054 0.83384 0.81872 1.90746 1.51443 1.23341 1.74119 1.45913 1.36683 1.16649 1.27893 1.21941 0.88889 1.00625 0.89068 1.19853 0.97443 0.95546 0.93148 1.20911 0.95215 1.36610 1.03011 0.90728 1.24935 0.97101 0.95152 0.95799 1.69898 1.32772 1.40472 1.10798 0.86812 0.85888 0.79669 0.77206 1.20167 1.21264 1.19033 0.92188 0.92148 0.90557 0.76889 0.76031 0.85338 0.84169 0.84457 0.89893 0.89452 0.87707 0.88352 0.89588 0.90282 0.96281 0.96454 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.60 10.70 59.85 0.64 1.24 16 2 N -0.75 -4.87 5.72 -72.07 -0.41 -5.28 16 3 C 0.70 7.48 8.30 -86.92 -0.72 6.76 16 4 O -0.57 -8.64 14.03 5.29 0.07 -8.57 16 5 N -0.68 -6.21 5.35 -14.18 -0.08 -6.28 16 6 C 0.13 1.56 6.28 -83.60 -0.53 1.03 16 7 C -0.11 -1.36 9.95 -39.42 -0.39 -1.75 16 8 C -0.13 -1.87 9.33 -39.42 -0.37 -2.23 16 9 C 0.16 2.63 6.33 -83.65 -0.53 2.10 16 10 C -0.11 -1.61 5.66 -104.48 -0.59 -2.20 16 11 C -0.08 -1.12 8.29 -39.43 -0.33 -1.45 16 12 C -0.07 -0.90 6.00 -27.94 -0.17 -1.07 16 13 C -0.14 -1.75 6.07 -28.04 -0.17 -1.92 16 14 C 0.51 9.31 7.46 -11.19 -0.08 9.23 16 15 O -0.52 -11.49 16.61 5.55 0.09 -11.40 16 16 N -0.55 -10.14 2.69 -113.58 -0.31 -10.44 16 17 C 0.11 2.40 5.08 -4.04 -0.02 2.38 16 18 C -0.02 -0.55 4.36 -27.88 -0.12 -0.67 16 19 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 20 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 22 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 23 Si 0.88 22.86 27.47 -169.99 -4.67 18.19 16 24 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.27 -6.81 6.54 56.52 0.37 -6.44 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.40 1.20 8.85 -40.82 -0.36 0.84 16 31 H 0.40 2.11 8.83 -40.82 -0.36 1.75 16 32 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.14 2.01 6.01 -52.49 -0.32 1.69 16 34 H 0.14 1.86 6.41 -52.49 -0.34 1.52 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 0.83 8.06 -51.93 -0.42 0.42 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.91 7.40 -51.93 -0.38 1.52 16 40 H 0.08 1.49 5.81 -51.93 -0.30 1.19 16 41 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 42 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 43 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -38.19 354.87 -8.77 -46.96 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -5.79 Total: 0.83 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -3.81 Total: -1.92 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.02 Total: -49.44 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.17 Total: -19.97 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.67 Total: 18.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.19 -8.77 -46.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347750209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.274 kcal (2) G-P(sol) polarization free energy of solvation -38.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds