Wall clock time and date at job start Tue Mar 31 2020 11:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 120.00000 * 2 1 4 4 O 1.21586 * 120.00219 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00036 * 179.97438 * 3 2 1 6 6 C 1.40116 * 120.00178 * 185.31250 * 5 3 2 7 7 C 1.38879 * 120.00137 * 213.31354 * 6 5 3 8 8 C 1.38038 * 120.01872 * 179.97438 * 7 6 5 9 9 C 1.38873 * 119.98539 * 359.97438 * 8 7 6 10 10 C 1.38860 * 119.98190 * 0.02562 * 9 8 7 11 11 C 1.38037 * 120.04236 * 359.97438 * 10 9 8 12 12 C 1.50678 * 119.83738 * 180.02562 * 10 9 8 13 13 C 1.52901 * 109.52331 * 326.03402 * 12 10 9 14 14 C 1.50472 * 109.92591 * 48.65394 * 13 12 10 15 15 O 1.21287 * 119.62769 * 144.76473 * 14 13 12 16 16 N 1.34557 * 120.75051 * 324.76638 * 14 13 12 17 17 C 1.46508 * 119.77621 * 180.78163 * 16 14 13 18 18 C 1.52995 * 109.47105 * 270.01896 * 17 16 14 19 19 C 1.50704 * 109.46974 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00040 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99854 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00084 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00094 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47473 * 89.99836 * 23 21 19 25 25 H 1.48500 * 109.47141 * 209.99760 * 23 21 19 26 26 H 1.48498 * 109.47289 * 329.99879 * 23 21 19 27 27 H 1.08997 * 109.47044 * 300.00510 * 1 2 3 28 28 H 1.08998 * 109.46559 * 60.00174 * 1 2 3 29 29 H 1.08994 * 109.46827 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99902 * 179.97438 * 2 1 3 31 31 H 0.97004 * 119.99872 * 5.31627 * 5 3 2 32 32 H 1.08005 * 119.99063 * 0.02562 * 7 6 5 33 33 H 1.07997 * 120.00650 * 180.02562 * 8 7 6 34 34 H 1.07996 * 120.01971 * 180.02562 * 11 10 9 35 35 H 1.08997 * 109.46176 * 86.04847 * 12 10 9 36 36 H 1.08992 * 109.45642 * 206.02323 * 12 10 9 37 37 H 1.09002 * 109.39850 * 168.77952 * 13 12 10 38 38 H 1.09006 * 109.40156 * 288.51411 * 13 12 10 39 39 H 1.08999 * 109.46593 * 30.02451 * 17 16 14 40 40 H 1.09004 * 109.46841 * 150.02081 * 17 16 14 41 41 H 1.09001 * 109.47234 * 300.00213 * 18 17 16 42 42 H 1.09004 * 109.47120 * 60.00356 * 18 17 16 43 43 H 0.96998 * 120.00273 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.1873 2.3754 0.1129 7 6 5.4051 2.5348 -0.5353 8 6 6.0954 3.7252 -0.4253 9 6 5.5714 4.7637 0.3333 10 6 4.3537 4.6040 0.9812 11 6 3.6633 3.4138 0.8714 12 6 3.7880 5.7332 1.8030 13 6 4.9298 6.5071 2.4627 14 6 5.9858 6.8327 1.4415 15 8 6.5890 7.8823 1.5164 16 7 6.2687 5.9727 0.4460 17 6 7.3130 6.3037 -0.5268 18 6 6.6934 7.0638 -1.7012 19 6 7.7678 7.4049 -2.7016 20 1 8.7900 7.1088 -2.5182 21 6 7.4455 8.0949 -3.8509 22 7 8.3829 8.3922 -4.7241 23 14 5.6775 8.6077 -4.1677 24 1 5.4415 9.9550 -3.5895 25 1 5.4280 8.6465 -5.6311 26 1 4.7572 7.6293 -3.5345 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.9500 -0.8401 0.0004 31 1 3.9717 0.3307 -0.0769 32 1 5.8120 1.7275 -1.1262 33 1 7.0422 3.8491 -0.9297 34 1 2.7160 3.2901 1.3751 35 1 3.2205 6.4034 1.1573 36 1 3.1313 5.3284 2.5729 37 1 4.5414 7.4320 2.8890 38 1 5.3678 5.9004 3.2555 39 1 8.0697 6.9264 -0.0496 40 1 7.7745 5.3858 -0.8909 41 1 5.9366 6.4411 -2.1783 42 1 6.2319 7.9817 -1.3371 43 1 8.1563 8.8780 -5.5325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347750209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:06 Heat of formation + Delta-G solvation = -60.504805 kcal Electronic energy + Delta-G solvation = -26392.563090 eV Core-core repulsion = 22629.479341 eV Total energy + Delta-G solvation = -3763.083749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24971 -41.35408 -39.55618 -37.31272 -36.32181 -35.62539 -34.91110 -34.65538 -32.35111 -31.00031 -29.81210 -27.47530 -27.19316 -25.41911 -23.88500 -23.73843 -22.19320 -21.82945 -20.22527 -19.63434 -19.22792 -18.70664 -18.05797 -17.43091 -17.03977 -16.60381 -16.30981 -16.03097 -15.78843 -15.57723 -15.27883 -15.13022 -14.94071 -14.76538 -14.50724 -14.30684 -14.16421 -13.92730 -13.60136 -13.39028 -13.03223 -12.98393 -12.87271 -12.63909 -12.58180 -12.12724 -11.92945 -11.79157 -11.68043 -11.57399 -11.35049 -10.91658 -10.84692 -10.41994 -10.06389 -9.75350 -8.49648 -8.37235 -6.41281 0.14888 0.38294 1.27279 1.28047 1.39965 1.48589 1.63202 1.85443 2.07969 2.27721 2.83462 2.97471 3.24172 3.42609 3.68599 3.77517 3.99194 4.13885 4.20777 4.30147 4.32609 4.36568 4.47254 4.49375 4.69142 4.70875 4.76494 4.79933 4.85436 4.93888 5.01045 5.06224 5.15214 5.21147 5.25660 5.32228 5.42308 5.47816 5.52583 5.67384 5.94437 6.01788 6.16323 6.38898 6.63801 6.96036 7.01619 7.23394 7.50242 8.78723 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.003737 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.798832 B = 7490.848555 C = 8520.376340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.731 5.731 3 C 0.693 3.307 4 O -0.618 6.618 5 N -0.669 5.669 6 C 0.138 3.862 7 C -0.107 4.107 8 C -0.138 4.138 9 C 0.128 3.872 10 C -0.111 4.111 11 C -0.090 4.090 12 C -0.071 4.071 13 C -0.124 4.124 14 C 0.500 3.500 15 O -0.574 6.574 16 N -0.552 5.552 17 C 0.126 3.874 18 C -0.009 4.009 19 C -0.528 4.528 20 H 0.046 0.954 21 C 0.017 3.983 22 N -0.940 5.940 23 Si 0.939 3.061 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.259 1.259 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.115 0.885 30 H 0.418 0.582 31 H 0.426 0.574 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.073 0.927 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.019 0.981 42 H -0.002 1.002 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.071 -24.260 14.887 32.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.387 5.387 3 C 0.393 3.607 4 O -0.497 6.497 5 N -0.318 5.318 6 C 0.042 3.958 7 C -0.128 4.128 8 C -0.159 4.159 9 C 0.033 3.967 10 C -0.115 4.115 11 C -0.111 4.111 12 C -0.108 4.108 13 C -0.163 4.163 14 C 0.291 3.709 15 O -0.453 6.453 16 N -0.274 5.274 17 C 0.004 3.996 18 C -0.047 4.047 19 C -0.566 4.566 20 H 0.065 0.935 21 C -0.181 4.181 22 N -0.581 5.581 23 Si 0.764 3.236 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.183 1.183 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.133 0.867 30 H 0.255 0.745 31 H 0.265 0.735 32 H 0.179 0.821 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.038 0.962 42 H 0.016 0.984 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.308 -22.692 14.790 31.617 hybrid contribution 0.328 0.131 -0.861 0.930 sum -15.981 -22.560 13.929 30.958 Atomic orbital electron populations 1.21576 0.77009 1.04275 1.01347 1.44822 1.08393 1.06621 1.78839 1.16226 0.81739 0.84944 0.77778 1.90951 1.68454 1.31970 1.58371 1.42331 1.04444 1.08658 1.76395 1.17421 0.93116 0.87308 0.97968 1.20858 0.94675 0.97922 0.99314 1.20893 1.01578 0.92278 1.01149 1.18008 0.92642 0.85740 1.00266 1.19551 0.92848 0.97235 1.01828 1.20782 0.99851 0.91809 0.98669 1.20460 0.96956 0.94217 0.99201 1.21729 0.93676 1.04447 0.96450 1.21697 0.84382 0.82469 0.82312 1.90713 1.53632 1.25501 1.75500 1.45801 1.36380 1.17873 1.27350 1.21519 0.89172 1.00561 0.88317 1.19655 0.96206 0.95113 0.93753 1.21194 0.95066 1.36361 1.04017 0.93547 1.25781 1.01417 0.95243 0.95648 1.70013 1.34985 1.41508 1.11543 0.85821 0.80713 0.79306 0.77799 1.19883 1.19723 1.18279 0.93132 0.93708 0.86666 0.74545 0.73544 0.82117 0.84675 0.84349 0.90848 0.86003 0.86147 0.85628 0.91601 0.88502 0.96233 0.98373 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 10.70 127.77 1.37 2.25 16 2 N -0.73 -7.17 5.72 -500.20 -2.86 -10.03 16 3 C 0.69 13.00 8.30 179.06 1.49 14.49 16 4 O -0.62 -17.75 14.03 -3.99 -0.06 -17.80 16 5 N -0.67 -9.99 5.35 -317.04 -1.70 -11.68 16 6 C 0.14 2.97 6.28 38.12 0.24 3.21 16 7 C -0.11 -2.28 9.95 22.38 0.22 -2.06 16 8 C -0.14 -3.85 9.33 22.37 0.21 -3.64 16 9 C 0.13 4.03 6.33 38.13 0.24 4.27 16 10 C -0.11 -3.01 5.66 -19.77 -0.11 -3.12 16 11 C -0.09 -2.24 8.29 22.37 0.19 -2.05 16 12 C -0.07 -1.61 6.00 29.81 0.18 -1.43 16 13 C -0.12 -2.97 6.07 29.74 0.18 -2.79 16 14 C 0.50 18.39 7.46 87.62 0.65 19.04 16 15 O -0.57 -26.26 16.61 -3.05 -0.05 -26.31 16 16 N -0.55 -20.63 2.69 -631.76 -1.70 -22.33 16 17 C 0.13 5.46 5.08 86.38 0.44 5.90 16 18 C -0.01 -0.46 4.36 29.85 0.13 -0.33 16 19 C -0.53 -31.74 9.66 25.60 0.25 -31.49 16 20 H 0.05 2.97 7.99 -2.91 -0.02 2.95 16 21 C 0.02 1.05 5.47 84.65 0.46 1.52 16 22 N -0.94 -60.12 13.96 21.45 0.30 -59.82 16 23 Si 0.94 47.56 27.47 68.60 1.88 49.45 16 24 H -0.27 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.26 -12.69 6.54 99.48 0.65 -12.04 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.42 0.83 8.85 -92.71 -0.82 0.01 16 31 H 0.43 2.71 8.83 -92.71 -0.82 1.89 16 32 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.14 3.82 6.01 -2.91 -0.02 3.80 16 34 H 0.14 3.46 6.41 -2.91 -0.02 3.44 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.12 1.91 8.06 -2.39 -0.02 1.90 16 37 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.13 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.07 3.10 7.40 -2.39 -0.02 3.08 16 40 H 0.10 3.78 5.81 -2.38 -0.01 3.77 16 41 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 42 H 0.00 -0.12 7.57 -2.38 -0.02 -0.14 16 43 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -86.45 354.87 1.32 -85.13 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -0.63 Total: 9.64 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 6.13 Total: 3.75 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -5.96 Total: -103.86 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.11 Total: -44.11 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.88 Total: 49.45 kcal Total: -86.45 1.32 -85.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347750209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.625 kcal (2) G-P(sol) polarization free energy of solvation -86.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds