Wall clock time and date at job start Tue Mar 31 2020 11:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35682 * 117.00193 * 2 1 4 4 C 1.38913 * 119.68680 * 180.02562 * 3 2 1 5 5 C 1.38379 * 119.11188 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48493 * 359.73737 * 5 4 3 7 7 C 1.38045 * 119.28980 * 0.52885 * 6 5 4 8 8 C 1.50703 * 119.58504 * 179.73271 * 7 6 5 9 9 C 1.50700 * 109.46967 * 124.72419 * 8 7 6 10 10 N 1.29942 * 126.28978 * 269.97681 * 9 8 7 11 11 O 1.21306 * 110.25137 * 180.02562 * 10 9 8 12 12 C 1.33645 * 109.81154 * 359.97438 * 11 10 9 13 13 C 1.50691 * 126.55129 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47367 * 269.95883 * 13 12 11 15 15 C 1.53000 * 109.47630 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47630 * 180.02562 * 15 14 13 17 17 C 1.50691 * 109.47367 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99925 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99967 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47337 * 59.99788 * 21 19 17 23 23 H 1.48499 * 109.47033 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47037 * 299.99600 * 21 19 17 25 25 N 1.31138 * 106.89453 * 0.02562 * 12 11 10 26 26 N 1.31966 * 120.83578 * 359.45588 * 7 6 5 27 27 H 1.09003 * 109.47650 * 300.00497 * 1 2 3 28 28 H 1.09007 * 109.47191 * 59.99993 * 1 2 3 29 29 H 1.08998 * 109.47573 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.44556 * 359.95751 * 4 3 2 31 31 H 1.08000 * 120.75785 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.35577 * 180.25896 * 6 5 4 33 33 H 1.08999 * 109.46670 * 4.73018 * 8 7 6 34 34 H 1.09000 * 109.47106 * 244.72570 * 8 7 6 35 35 H 1.09001 * 109.47255 * 29.96194 * 13 12 11 36 36 H 1.09000 * 109.47143 * 149.95492 * 13 12 11 37 37 H 1.09001 * 109.47188 * 300.00353 * 14 13 12 38 38 H 1.09000 * 109.47308 * 59.99710 * 14 13 12 39 39 H 1.09001 * 109.46920 * 300.00268 * 15 14 13 40 40 H 1.09000 * 109.47215 * 59.99404 * 15 14 13 41 41 H 1.09001 * 109.47188 * 300.00104 * 16 15 14 42 42 H 1.09000 * 109.47308 * 59.99461 * 16 15 14 43 43 H 0.96996 * 120.00402 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 -0.0011 6 6 3.2504 3.6491 -0.0066 7 6 1.8771 3.5097 -0.0003 8 6 1.0045 4.7384 -0.0002 9 6 0.0487 4.6759 -1.1637 10 7 0.2601 5.1410 -2.3585 11 8 -0.7032 4.9340 -3.0662 12 6 -1.6490 4.2974 -2.3689 13 6 -2.9970 3.8576 -2.8790 14 6 -4.0165 4.9765 -2.6564 15 6 -5.3853 4.5298 -3.1737 16 6 -6.4046 5.6489 -2.9517 17 6 -7.7526 5.2091 -3.4618 18 1 -7.8705 4.2295 -3.9009 19 6 -8.8354 6.0578 -3.3689 20 7 -8.6915 7.2513 -2.8356 21 14 -10.5066 5.5123 -4.0006 22 1 -10.9401 4.2961 -3.2672 23 1 -11.4958 6.5986 -3.7852 24 1 -10.4124 5.2084 -5.4511 25 7 -1.1798 4.1285 -1.1561 26 7 1.3185 2.3141 0.0001 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0229 0.3695 -0.0003 31 1 5.1254 2.5947 -0.0019 32 1 3.6993 4.6315 -0.0114 33 1 1.6288 5.6273 -0.0903 34 1 0.4403 4.7833 0.9314 35 1 -2.9278 3.6357 -3.9439 36 1 -3.3150 2.9641 -2.3417 37 1 -4.0856 5.1984 -1.5915 38 1 -3.6985 5.8700 -3.1937 39 1 -5.3164 4.3076 -4.2386 40 1 -5.7031 3.6364 -2.6361 41 1 -6.4736 5.8716 -1.8869 42 1 -6.0866 6.5420 -3.4897 43 1 -9.4530 7.8485 -2.7706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350128976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:16 Heat of formation + Delta-G solvation = 43.153920 kcal Electronic energy + Delta-G solvation = -24961.378039 eV Core-core repulsion = 21202.789269 eV Total energy + Delta-G solvation = -3758.588769 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.52525 -41.00466 -38.39307 -36.25285 -35.74290 -33.79959 -33.00737 -32.30550 -31.58332 -29.44441 -28.79969 -27.14964 -25.76912 -23.93425 -23.37373 -23.09925 -22.24802 -20.87175 -20.16749 -18.58090 -17.95110 -17.46192 -17.01673 -16.38737 -16.30010 -16.20942 -15.18122 -15.02386 -14.70847 -14.57688 -14.56722 -14.34447 -13.56187 -13.39028 -13.00269 -12.89433 -12.78117 -12.54613 -12.12146 -12.05949 -12.01651 -11.69701 -11.41444 -11.38715 -11.03117 -10.94806 -10.63483 -10.59110 -10.55386 -10.25944 -10.06179 -9.81417 -9.70292 -9.29934 -9.05078 -8.83195 -8.33934 -5.99004 -4.01567 0.68133 0.91801 1.19787 2.24800 2.78465 2.89200 3.27165 3.33900 3.38444 3.40637 3.68438 3.70777 3.97383 4.37304 4.46490 4.64375 4.70899 4.83516 4.87664 5.05656 5.08439 5.13236 5.13730 5.19911 5.25646 5.36326 5.37435 5.44988 5.57482 5.58281 5.77716 5.84604 5.92356 6.02106 6.08699 6.08840 6.36235 6.68914 6.83950 6.89764 7.10879 7.51608 7.68115 7.82352 8.00983 8.20184 8.42942 9.05606 9.62424 11.12280 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.002086 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.870487 B =13422.711993 C =14172.567115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.324 3.676 4 C -0.193 4.193 5 C -0.040 4.040 6 C -0.200 4.200 7 C 0.171 3.829 8 C 0.022 3.978 9 C 0.178 3.822 10 N -0.390 5.390 11 O 0.074 5.926 12 C 0.195 3.805 13 C -0.030 4.030 14 C -0.115 4.115 15 C -0.108 4.108 16 C 0.020 3.980 17 C -0.521 4.521 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 N -0.469 5.469 26 N -0.522 5.522 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.576 -10.407 6.460 29.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.145 3.855 4 C -0.213 4.213 5 C -0.065 4.065 6 C -0.221 4.221 7 C 0.033 3.967 8 C -0.017 4.017 9 C -0.095 4.095 10 N -0.098 5.098 11 O 0.016 5.984 12 C -0.025 4.025 13 C -0.069 4.069 14 C -0.153 4.153 15 C -0.146 4.146 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 N -0.202 5.202 26 N -0.245 5.245 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.129 0.871 34 H 0.135 0.865 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 26.402 -10.335 6.702 29.134 hybrid contribution -0.451 -0.080 -0.402 0.609 sum 25.952 -10.415 6.300 28.664 Atomic orbital electron populations 1.22886 0.76567 1.02988 1.02968 1.86228 1.23423 1.24326 1.87630 1.19841 0.89329 0.84700 0.91661 1.21107 0.92083 0.99747 1.08402 1.21391 1.00623 0.91069 0.93409 1.21796 0.93577 1.00335 1.06381 1.20466 0.91415 0.91139 0.93658 1.18820 0.93615 0.94923 0.94325 1.25219 0.92867 0.97246 0.94155 1.74596 1.08152 1.22208 1.04878 1.85282 1.19244 1.56160 1.37763 1.29159 0.95348 0.91844 0.86157 1.20511 0.82693 1.01112 1.02577 1.21728 0.94920 0.96237 1.02455 1.21631 0.92580 1.00731 0.99663 1.19093 0.92481 0.92967 0.97149 1.21223 0.94029 1.01008 1.39717 0.92696 1.25037 0.99098 0.94983 0.95423 1.69950 1.31021 1.07638 1.44885 0.86659 0.83778 0.78171 0.79388 1.20251 1.21339 1.20245 1.71930 1.07942 1.21522 1.18832 1.67120 1.40830 0.98198 1.18399 0.91931 0.92194 0.88528 0.84035 0.83839 0.84182 0.87099 0.86499 0.88225 0.87385 0.91462 0.91678 0.92946 0.92939 0.96578 0.96578 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.31 -3.44 10.48 -18.75 -0.20 -3.64 16 3 C 0.32 3.67 7.49 -17.12 -0.13 3.54 16 4 C -0.19 -1.67 10.04 -39.28 -0.39 -2.06 16 5 C -0.04 -0.28 10.17 -39.31 -0.40 -0.68 16 6 C -0.20 -1.59 9.70 -39.43 -0.38 -1.97 16 7 C 0.17 1.79 6.16 -82.60 -0.51 1.28 16 8 C 0.02 0.22 6.24 -29.03 -0.18 0.04 16 9 C 0.18 2.44 7.25 -156.38 -1.13 1.30 16 10 N -0.39 -5.71 12.16 30.90 0.38 -5.34 16 11 O 0.07 1.08 11.31 18.09 0.20 1.28 16 12 C 0.20 2.73 7.77 -13.05 -0.10 2.63 16 13 C -0.03 -0.37 5.84 -27.89 -0.16 -0.53 16 14 C -0.11 -1.79 5.20 -26.73 -0.14 -1.93 16 15 C -0.11 -2.06 5.15 -26.73 -0.14 -2.19 16 16 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 17 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 18 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 21 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 N -0.47 -6.96 11.55 -9.87 -0.11 -7.08 16 26 N -0.52 -6.39 8.87 -9.55 -0.08 -6.48 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 31 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 32 H 0.14 0.74 7.94 -52.48 -0.42 0.32 16 33 H 0.11 0.80 7.86 -51.93 -0.41 0.39 16 34 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -33.72 375.04 -7.90 -41.62 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -6.28 Total: -4.21 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -3.17 Total: -12.15 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.91 Total: -45.07 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: 0.01 Total: -2.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.72 -7.90 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350128976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.775 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds