Wall clock time and date at job start Tue Mar 31 2020 11:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35682 * 117.00193 * 2 1 4 4 C 1.38913 * 119.68680 * 180.02562 * 3 2 1 5 5 C 1.38379 * 119.11188 * 179.97438 * 4 3 2 6 6 C 1.38826 * 118.48493 * 359.73737 * 5 4 3 7 7 C 1.38045 * 119.28980 * 0.52885 * 6 5 4 8 8 C 1.50703 * 119.58504 * 179.73271 * 7 6 5 9 9 C 1.50700 * 109.46967 * 124.72419 * 8 7 6 10 10 N 1.29942 * 126.28978 * 269.97681 * 9 8 7 11 11 O 1.21306 * 110.25137 * 180.02562 * 10 9 8 12 12 C 1.33645 * 109.81154 * 359.97438 * 11 10 9 13 13 C 1.50691 * 126.55129 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47367 * 269.95883 * 13 12 11 15 15 C 1.53000 * 109.47630 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47630 * 180.02562 * 15 14 13 17 17 C 1.50691 * 109.47367 * 179.97438 * 16 15 14 18 18 H 1.08004 * 120.00071 * 359.97438 * 17 16 15 19 19 C 1.37884 * 120.00138 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99925 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99967 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47337 * 59.99788 * 21 19 17 23 23 H 1.48499 * 109.47033 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47037 * 299.99600 * 21 19 17 25 25 N 1.31138 * 106.89453 * 0.02562 * 12 11 10 26 26 N 1.31966 * 120.83578 * 359.45588 * 7 6 5 27 27 H 1.09003 * 109.47650 * 300.00497 * 1 2 3 28 28 H 1.09007 * 109.47191 * 59.99993 * 1 2 3 29 29 H 1.08998 * 109.47573 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.44556 * 359.95751 * 4 3 2 31 31 H 1.08000 * 120.75785 * 180.02562 * 5 4 3 32 32 H 1.08005 * 120.35577 * 180.25896 * 6 5 4 33 33 H 1.08999 * 109.46670 * 4.73018 * 8 7 6 34 34 H 1.09000 * 109.47106 * 244.72570 * 8 7 6 35 35 H 1.09001 * 109.47255 * 29.96194 * 13 12 11 36 36 H 1.09000 * 109.47143 * 149.95492 * 13 12 11 37 37 H 1.09001 * 109.47188 * 300.00353 * 14 13 12 38 38 H 1.09000 * 109.47308 * 59.99710 * 14 13 12 39 39 H 1.09001 * 109.46920 * 300.00268 * 15 14 13 40 40 H 1.09000 * 109.47215 * 59.99404 * 15 14 13 41 41 H 1.09001 * 109.47188 * 300.00104 * 16 15 14 42 42 H 1.09000 * 109.47308 * 59.99461 * 16 15 14 43 43 H 0.96996 * 120.00402 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 -0.0011 6 6 3.2504 3.6491 -0.0066 7 6 1.8771 3.5097 -0.0003 8 6 1.0045 4.7384 -0.0002 9 6 0.0487 4.6759 -1.1637 10 7 0.2601 5.1410 -2.3585 11 8 -0.7032 4.9340 -3.0662 12 6 -1.6490 4.2974 -2.3689 13 6 -2.9970 3.8576 -2.8790 14 6 -4.0165 4.9765 -2.6564 15 6 -5.3853 4.5298 -3.1737 16 6 -6.4046 5.6489 -2.9517 17 6 -7.7526 5.2091 -3.4618 18 1 -7.8705 4.2295 -3.9009 19 6 -8.8354 6.0578 -3.3689 20 7 -8.6915 7.2513 -2.8356 21 14 -10.5066 5.5123 -4.0006 22 1 -10.9401 4.2961 -3.2672 23 1 -11.4958 6.5986 -3.7852 24 1 -10.4124 5.2084 -5.4511 25 7 -1.1798 4.1285 -1.1561 26 7 1.3185 2.3141 0.0001 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 4.0229 0.3695 -0.0003 31 1 5.1254 2.5947 -0.0019 32 1 3.6993 4.6315 -0.0114 33 1 1.6288 5.6273 -0.0903 34 1 0.4403 4.7833 0.9314 35 1 -2.9278 3.6357 -3.9439 36 1 -3.3150 2.9641 -2.3417 37 1 -4.0856 5.1984 -1.5915 38 1 -3.6985 5.8700 -3.1937 39 1 -5.3164 4.3076 -4.2386 40 1 -5.7031 3.6364 -2.6361 41 1 -6.4736 5.8716 -1.8869 42 1 -6.0866 6.5420 -3.4897 43 1 -9.4530 7.8485 -2.7706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350128976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:15 Heat of formation + Delta-G solvation = 20.175931 kcal Electronic energy + Delta-G solvation = -24962.374439 eV Core-core repulsion = 21202.789269 eV Total energy + Delta-G solvation = -3759.585169 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.60179 -41.69306 -39.12295 -37.44464 -36.95370 -35.28885 -34.19871 -33.40416 -32.60150 -30.95073 -29.61860 -27.88099 -27.48325 -25.03264 -24.44687 -23.99773 -23.38548 -21.94155 -21.76935 -19.37920 -18.99460 -18.51053 -18.34460 -17.77448 -17.07678 -16.95714 -16.57163 -16.38029 -15.98631 -15.54341 -15.36664 -15.29712 -14.62778 -14.37240 -14.16453 -14.04512 -13.79127 -13.69076 -13.45720 -13.30146 -13.12589 -12.78684 -12.75326 -12.52458 -12.35134 -12.22915 -12.16568 -12.14557 -11.99896 -11.38461 -11.35788 -11.21110 -10.91462 -10.82761 -10.59188 -10.51612 -9.52046 -8.16948 -6.27794 -0.01354 0.13226 0.29051 1.20297 1.42327 1.45349 1.53019 1.82284 2.10417 2.43475 2.49764 2.84056 2.93854 3.08870 3.16351 3.74852 3.88620 4.03776 4.04516 4.08182 4.11977 4.29175 4.32837 4.34605 4.37856 4.44022 4.52332 4.64181 4.70497 4.71550 4.78552 4.82631 4.90209 4.96449 4.99284 5.17715 5.18110 5.32288 5.33637 5.45708 5.58425 5.81644 5.91239 6.17047 6.28493 6.81571 6.90658 7.12484 7.41491 8.94723 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023507 B = 0.002086 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.870487 B =13422.711993 C =14172.567115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.321 6.321 3 C 0.293 3.707 4 C -0.194 4.194 5 C -0.033 4.033 6 C -0.193 4.193 7 C 0.146 3.854 8 C 0.021 3.979 9 C 0.179 3.821 10 N -0.404 5.404 11 O 0.063 5.937 12 C 0.195 3.805 13 C -0.019 4.019 14 C -0.103 4.103 15 C -0.095 4.095 16 C 0.019 3.981 17 C -0.541 4.541 18 H 0.065 0.935 19 C -0.005 4.005 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.265 1.265 25 N -0.491 5.491 26 N -0.551 5.551 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.122 0.878 30 H 0.160 0.840 31 H 0.183 0.817 32 H 0.170 0.830 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.061 0.939 41 H -0.013 1.013 42 H -0.010 1.010 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.026 -11.577 6.030 30.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.228 6.228 3 C 0.114 3.886 4 C -0.215 4.215 5 C -0.058 4.058 6 C -0.213 4.213 7 C 0.009 3.991 8 C -0.018 4.018 9 C -0.094 4.094 10 N -0.115 5.115 11 O 0.008 5.992 12 C -0.025 4.025 13 C -0.058 4.058 14 C -0.142 4.142 15 C -0.133 4.133 16 C -0.018 4.018 17 C -0.579 4.579 18 H 0.083 0.917 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.789 3.211 22 H -0.191 1.191 23 H -0.212 1.212 24 H -0.190 1.190 25 N -0.224 5.224 26 N -0.276 5.276 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.140 0.860 30 H 0.178 0.822 31 H 0.200 0.800 32 H 0.188 0.812 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.005 0.995 42 H 0.008 0.992 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 27.856 -11.513 6.258 30.784 hybrid contribution -0.830 0.320 -0.225 0.918 sum 27.026 -11.192 6.033 29.868 Atomic orbital electron populations 1.22889 0.76286 1.04209 1.01577 1.86204 1.23813 1.24786 1.88037 1.20241 0.90475 0.84516 0.93381 1.21472 0.91159 1.01417 1.07421 1.21882 1.02454 0.89917 0.91561 1.22178 0.92549 1.02178 1.04367 1.20673 0.92695 0.90572 0.95197 1.19070 0.93490 0.96192 0.93001 1.25865 0.92873 0.95902 0.94769 1.74574 1.08452 1.23162 1.05346 1.85253 1.19466 1.56459 1.38025 1.29371 0.95641 0.91457 0.86066 1.20452 0.80925 0.99917 1.04482 1.21490 0.94160 0.97291 1.01282 1.21417 0.92491 0.98527 1.00858 1.19046 0.93797 0.94251 0.94699 1.21737 0.95264 1.01440 1.39465 0.91688 1.26028 1.03597 0.94996 0.95642 1.70098 1.32282 1.08986 1.46293 0.85503 0.78414 0.77899 0.79251 1.19114 1.21211 1.19001 1.71953 1.08866 1.22250 1.19352 1.67020 1.42135 0.99087 1.19337 0.92904 0.93922 0.85976 0.82229 0.79958 0.81220 0.84297 0.86236 0.85588 0.86020 0.92818 0.92140 0.91565 0.92033 0.99461 0.99175 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 10.38 113.37 1.18 2.06 16 2 O -0.32 -7.22 10.48 -90.00 -0.94 -8.16 16 3 C 0.29 6.57 7.49 84.79 0.63 7.21 16 4 C -0.19 -3.04 10.04 22.47 0.23 -2.81 16 5 C -0.03 -0.36 10.17 22.44 0.23 -0.14 16 6 C -0.19 -2.55 9.70 22.36 0.22 -2.33 16 7 C 0.15 2.91 6.16 42.49 0.26 3.17 16 8 C 0.02 0.41 6.24 29.10 0.18 0.59 16 9 C 0.18 4.84 7.25 138.46 1.00 5.84 16 10 N -0.40 -11.70 12.16 -60.30 -0.73 -12.43 16 11 O 0.06 1.83 11.31 74.81 0.85 2.68 16 12 C 0.19 5.38 7.77 88.38 0.69 6.07 16 13 C -0.02 -0.45 5.84 29.84 0.17 -0.28 16 14 C -0.10 -3.20 5.20 30.59 0.16 -3.04 16 15 C -0.10 -3.57 5.15 30.59 0.16 -3.41 16 16 C 0.02 0.99 4.97 29.84 0.15 1.14 16 17 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 18 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 19 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 20 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 21 Si 0.96 44.08 29.54 68.60 2.03 46.11 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 N -0.49 -14.58 11.55 -303.18 -3.50 -18.09 16 26 N -0.55 -13.54 8.87 -296.98 -2.63 -16.17 16 27 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 28 H 0.04 0.95 8.10 -2.38 -0.02 0.93 16 29 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 31 H 0.18 0.53 8.06 -2.91 -0.02 0.50 16 32 H 0.17 1.13 7.94 -2.91 -0.02 1.11 16 33 H 0.14 1.73 7.86 -2.39 -0.02 1.72 16 34 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 43 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -75.17 375.04 2.30 -72.87 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: 1.01 Total: 6.31 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: 5.95 Total: -15.94 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -6.58 Total: -103.86 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.10 Total: -5.48 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -75.17 2.30 -72.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350128976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.044 kcal (2) G-P(sol) polarization free energy of solvation -75.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds