Wall clock time and date at job start Tue Mar 31 2020 11:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36945 * 120.00046 * 2 1 4 4 H 1.08000 * 119.99556 * 210.62046 * 3 2 1 5 5 C 1.38804 * 120.00085 * 30.61723 * 3 2 1 6 6 N 1.31617 * 120.00040 * 7.18151 * 5 3 2 7 7 Si 1.86797 * 120.00270 * 187.17955 * 5 3 2 8 8 H 1.48503 * 109.47006 * 89.99648 * 7 5 3 9 9 H 1.48500 * 109.47451 * 210.00241 * 7 5 3 10 10 H 1.48504 * 109.46891 * 330.00492 * 7 5 3 11 11 C 1.46494 * 120.00094 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.47560 * 89.99323 * 11 2 1 13 13 O 1.21290 * 119.99461 * 0.02562 * 12 11 2 14 14 N 1.34773 * 120.00395 * 180.02562 * 12 11 2 15 15 C 1.39919 * 120.00155 * 184.61824 * 14 12 11 16 16 C 1.38947 * 120.03462 * 323.21216 * 15 14 12 17 17 C 1.38142 * 120.07063 * 180.02562 * 16 15 14 18 18 C 1.38185 * 120.13921 * 359.74206 * 17 16 15 19 19 C 1.38907 * 120.06673 * 0.51102 * 18 17 16 20 20 N 1.39930 * 120.03347 * 179.76744 * 19 18 17 21 21 C 1.46764 * 124.34909 * 354.33157 * 20 19 18 22 22 C 1.54479 * 105.47353 * 162.98461 * 21 20 19 23 23 C 1.54628 * 101.76346 * 25.41854 * 22 21 20 24 24 C 1.34416 * 124.34865 * 174.33660 * 20 19 18 25 25 O 1.21290 * 124.94238 * 0.66562 * 24 20 19 26 26 C 1.38729 * 120.03856 * 143.23170 * 15 14 12 27 27 H 1.08999 * 109.46736 * 265.38200 * 1 2 3 28 28 H 1.09000 * 109.47329 * 25.37260 * 1 2 3 29 29 H 1.08994 * 109.47632 * 145.37735 * 1 2 3 30 30 H 0.97000 * 120.00159 * 179.97438 * 6 5 3 31 31 H 1.09010 * 109.46921 * 329.99566 * 11 2 1 32 32 H 1.08998 * 109.47433 * 209.99546 * 11 2 1 33 33 H 0.96999 * 119.99829 * 4.62100 * 14 12 11 34 34 H 1.07991 * 119.96650 * 359.97438 * 16 15 14 35 35 H 1.08000 * 119.93148 * 179.97438 * 17 16 15 36 36 H 1.07992 * 119.96733 * 180.27742 * 18 17 16 37 37 H 1.09003 * 110.24473 * 43.98247 * 21 20 19 38 38 H 1.08998 * 110.24548 * 281.98734 * 21 20 19 39 39 H 1.08999 * 110.96980 * 267.29534 * 22 21 20 40 40 H 1.08999 * 111.00215 * 143.54782 * 22 21 20 41 41 H 1.09002 * 110.48237 * 216.52381 * 23 22 21 42 42 H 1.08997 * 110.49041 * 93.88346 * 23 22 21 43 43 H 1.07997 * 120.06370 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1168 1.2511 -0.4764 5 6 1.6009 2.3043 0.6122 6 7 0.4924 2.1934 1.3131 7 14 2.4354 3.9667 0.4415 8 1 1.9029 4.6674 -0.7547 9 1 2.1671 4.7822 1.6532 10 1 3.8998 3.7721 0.2900 11 6 2.1975 -1.2687 -0.0006 12 6 2.4486 -1.7032 -1.4215 13 8 2.0548 -1.0201 -2.3431 14 7 3.1106 -2.8509 -1.6683 15 6 3.4286 -3.2062 -2.9838 16 6 2.5393 -2.9264 -4.0140 17 6 2.8523 -3.2773 -5.3130 18 6 4.0523 -3.9027 -5.5928 19 6 4.9433 -4.1900 -4.5665 20 7 6.1561 -4.8277 -4.8500 21 6 6.5324 -5.3412 -6.1724 22 6 8.0625 -5.5461 -6.1149 23 6 8.2965 -5.7498 -4.6000 24 6 7.1262 -5.0487 -3.9462 25 8 7.0694 -4.7361 -2.7757 26 6 4.6319 -3.8387 -3.2607 27 1 -0.3633 -0.0827 1.0243 28 1 -0.3634 0.9285 -0.4404 29 1 -0.3634 -0.8456 -0.5838 30 1 0.1090 2.9748 1.7412 31 1 1.6084 -2.0286 0.5130 32 1 3.1499 -1.1386 0.5132 33 1 3.3667 -3.4306 -0.9340 34 1 1.6022 -2.4347 -3.7991 35 1 2.1592 -3.0591 -6.1120 36 1 4.2961 -4.1718 -6.6098 37 1 6.2777 -4.6158 -6.9452 38 1 6.0317 -6.2900 -6.3650 39 1 8.5882 -4.6620 -6.4754 40 1 8.3596 -6.4308 -6.6779 41 1 9.2361 -5.2899 -4.2940 42 1 8.2919 -6.8113 -4.3526 43 1 5.3247 -4.0572 -2.4617 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355948543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:42 Heat of formation + Delta-G solvation = -0.507730 kcal Electronic energy + Delta-G solvation = -25927.608679 eV Core-core repulsion = 22167.126599 eV Total energy + Delta-G solvation = -3760.482080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.28858 -39.79683 -38.00709 -36.86402 -35.20296 -34.27598 -33.06224 -31.31205 -29.96122 -28.98060 -28.08747 -26.92822 -25.73022 -23.52792 -23.13411 -22.10104 -21.02776 -20.36963 -19.31730 -17.97330 -17.19990 -16.88767 -16.57547 -16.19489 -15.78420 -15.56570 -14.86009 -14.72821 -14.31358 -14.25495 -13.99387 -13.68364 -13.57009 -13.34079 -13.29654 -13.13050 -12.80203 -12.54640 -12.10735 -11.78456 -11.64791 -11.63546 -11.55970 -11.22590 -10.84257 -10.69920 -10.52945 -10.36890 -9.98614 -9.93437 -9.86445 -9.72467 -9.16248 -8.48240 -8.22194 -7.74586 -6.67742 -5.74656 -3.25821 1.29582 1.44265 2.36981 2.51466 3.30343 3.41423 3.47571 3.48958 3.55528 3.84470 3.94709 3.99217 4.30416 4.51206 4.52949 4.93779 4.96385 4.99371 5.10931 5.19924 5.28361 5.35303 5.45212 5.46162 5.50405 5.56079 5.58512 5.69711 5.86263 6.10459 6.15555 6.32264 6.35673 6.57291 6.61956 6.78062 6.84014 6.92557 7.27340 7.39289 7.68836 7.77640 7.85308 7.89016 8.43520 8.84584 9.23552 9.81897 10.33342 11.32350 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.002742 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.357024 B =10210.429395 C =10621.540216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.572 5.572 3 C -0.255 4.255 4 H 0.063 0.937 5 C 0.009 3.991 6 N -0.905 5.905 7 Si 0.909 3.091 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.136 3.864 12 C 0.475 3.525 13 O -0.503 6.503 14 N -0.688 5.688 15 C 0.188 3.812 16 C -0.143 4.143 17 C -0.076 4.076 18 C -0.182 4.182 19 C 0.174 3.826 20 N -0.558 5.558 21 C 0.096 3.904 22 C -0.132 4.132 23 C -0.153 4.153 24 C 0.512 3.488 25 O -0.508 6.508 26 C -0.190 4.190 27 H 0.024 0.976 28 H 0.054 0.946 29 H -0.006 1.006 30 H 0.254 0.746 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.407 0.593 34 H 0.139 0.861 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.533 -20.594 -15.409 28.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.291 5.291 3 C -0.385 4.385 4 H 0.081 0.919 5 C -0.190 4.190 6 N -0.549 5.549 7 Si 0.738 3.262 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.203 1.203 11 C 0.003 3.997 12 C 0.261 3.739 13 O -0.374 6.374 14 N -0.335 5.335 15 C 0.091 3.909 16 C -0.164 4.164 17 C -0.096 4.096 18 C -0.203 4.203 19 C 0.081 3.919 20 N -0.282 5.282 21 C -0.027 4.027 22 C -0.170 4.170 23 C -0.193 4.193 24 C 0.301 3.699 25 O -0.383 6.383 26 C -0.213 4.213 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.013 0.987 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.242 0.758 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 12.049 -19.658 -15.236 27.636 hybrid contribution 0.540 0.649 -0.002 0.845 sum 12.590 -19.010 -15.237 27.423 Atomic orbital electron populations 1.20805 0.82254 0.97589 0.97478 1.43512 1.01871 0.99717 1.83991 1.19120 1.02874 0.87274 1.29210 0.91879 1.25157 0.97813 0.99038 0.96955 1.70027 1.21050 1.28869 1.34958 0.86193 0.79186 0.83715 0.77056 1.21322 1.21585 1.20340 1.20686 0.98851 0.90880 0.89290 1.23918 0.75705 0.78394 0.95879 1.90628 1.47670 1.52672 1.46466 1.44190 1.59202 1.24242 1.05872 1.17705 0.92029 0.95255 0.85911 1.21324 1.00723 1.02305 0.92070 1.20799 0.95778 0.96579 0.96406 1.20612 0.95760 1.06463 0.97515 1.17387 0.85059 0.95873 0.93603 1.45755 1.15387 1.55314 1.11740 1.22245 0.95858 1.00246 0.84334 1.22626 0.94529 1.04092 0.95709 1.22346 0.98262 1.02888 0.95837 1.21098 0.84493 0.78607 0.85706 1.90658 1.80086 1.51726 1.15844 1.21287 0.97192 1.06204 0.96569 0.95776 0.92704 0.98718 0.93599 0.91069 0.89835 0.75822 0.84333 0.85542 0.86126 0.89440 0.90088 0.89575 0.88621 0.87516 0.87355 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.22 8.99 59.85 0.54 4.76 16 2 N -0.57 -15.08 2.39 -182.51 -0.44 -15.51 16 3 C -0.26 -7.39 9.58 -15.06 -0.14 -7.53 16 4 H 0.06 1.85 7.84 -52.49 -0.41 1.44 16 5 C 0.01 0.27 5.14 -17.43 -0.09 0.18 16 6 N -0.91 -26.92 10.95 55.49 0.61 -26.32 16 7 Si 0.91 22.76 29.56 -169.99 -5.02 17.74 16 8 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 C 0.14 2.83 6.17 -5.20 -0.03 2.79 16 12 C 0.48 9.69 7.73 -10.99 -0.08 9.61 16 13 O -0.50 -12.29 13.97 5.55 0.08 -12.21 16 14 N -0.69 -11.27 5.33 -9.88 -0.05 -11.32 16 15 C 0.19 3.11 6.26 -83.72 -0.52 2.59 16 16 C -0.14 -2.36 8.68 -39.35 -0.34 -2.70 16 17 C -0.08 -1.02 10.03 -39.64 -0.40 -1.41 16 18 C -0.18 -2.16 9.42 -39.35 -0.37 -2.53 16 19 C 0.17 2.32 6.59 -83.72 -0.55 1.76 16 20 N -0.56 -5.86 3.14 -112.29 -0.35 -6.21 16 21 C 0.10 0.54 6.50 -3.12 -0.02 0.52 16 22 C -0.13 -0.47 7.18 -25.10 -0.18 -0.65 16 23 C -0.15 -0.90 6.86 -26.74 -0.18 -1.08 16 24 C 0.51 5.74 7.92 -10.86 -0.09 5.66 16 25 O -0.51 -7.77 14.81 5.55 0.08 -7.69 16 26 C -0.19 -2.94 9.21 -39.21 -0.36 -3.30 16 27 H 0.02 0.63 7.76 -51.93 -0.40 0.23 16 28 H 0.05 1.55 7.06 -51.93 -0.37 1.18 16 29 H -0.01 -0.13 8.11 -51.93 -0.42 -0.55 16 30 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.07 1.27 8.07 -51.92 -0.42 0.85 16 32 H 0.08 1.65 8.04 -51.93 -0.42 1.23 16 33 H 0.41 5.28 8.83 -40.82 -0.36 4.92 16 34 H 0.14 2.56 6.35 -52.49 -0.33 2.23 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.05 6.74 -52.49 -0.35 0.69 16 37 H 0.09 0.42 7.23 -51.93 -0.38 0.04 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.16 2.53 5.24 -52.49 -0.28 2.25 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -37.12 356.09 -8.37 -45.49 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.81 Total: 2.02 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -2.83 Total: 8.65 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.23 Total: -59.36 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.16 Total: -19.90 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.12 -8.37 -45.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355948543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.982 kcal (2) G-P(sol) polarization free energy of solvation -37.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds