Wall clock time and date at job start Tue Mar 31 2020 11:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36945 * 120.00046 * 2 1 4 4 H 1.08000 * 119.99556 * 210.62046 * 3 2 1 5 5 C 1.38804 * 120.00085 * 30.61723 * 3 2 1 6 6 N 1.31617 * 120.00040 * 7.18151 * 5 3 2 7 7 Si 1.86797 * 120.00270 * 187.17955 * 5 3 2 8 8 H 1.48503 * 109.47006 * 89.99648 * 7 5 3 9 9 H 1.48500 * 109.47451 * 210.00241 * 7 5 3 10 10 H 1.48504 * 109.46891 * 330.00492 * 7 5 3 11 11 C 1.46494 * 120.00094 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.47560 * 89.99323 * 11 2 1 13 13 O 1.21290 * 119.99461 * 0.02562 * 12 11 2 14 14 N 1.34773 * 120.00395 * 180.02562 * 12 11 2 15 15 C 1.39919 * 120.00155 * 184.61824 * 14 12 11 16 16 C 1.38947 * 120.03462 * 323.21216 * 15 14 12 17 17 C 1.38142 * 120.07063 * 180.02562 * 16 15 14 18 18 C 1.38185 * 120.13921 * 359.74206 * 17 16 15 19 19 C 1.38907 * 120.06673 * 0.51102 * 18 17 16 20 20 N 1.39930 * 120.03347 * 179.76744 * 19 18 17 21 21 C 1.46764 * 124.34909 * 354.33157 * 20 19 18 22 22 C 1.54479 * 105.47353 * 162.98461 * 21 20 19 23 23 C 1.54628 * 101.76346 * 25.41854 * 22 21 20 24 24 C 1.34416 * 124.34865 * 174.33660 * 20 19 18 25 25 O 1.21290 * 124.94238 * 0.66562 * 24 20 19 26 26 C 1.38729 * 120.03856 * 143.23170 * 15 14 12 27 27 H 1.08999 * 109.46736 * 265.38200 * 1 2 3 28 28 H 1.09000 * 109.47329 * 25.37260 * 1 2 3 29 29 H 1.08994 * 109.47632 * 145.37735 * 1 2 3 30 30 H 0.97000 * 120.00159 * 179.97438 * 6 5 3 31 31 H 1.09010 * 109.46921 * 329.99566 * 11 2 1 32 32 H 1.08998 * 109.47433 * 209.99546 * 11 2 1 33 33 H 0.96999 * 119.99829 * 4.62100 * 14 12 11 34 34 H 1.07991 * 119.96650 * 359.97438 * 16 15 14 35 35 H 1.08000 * 119.93148 * 179.97438 * 17 16 15 36 36 H 1.07992 * 119.96733 * 180.27742 * 18 17 16 37 37 H 1.09003 * 110.24473 * 43.98247 * 21 20 19 38 38 H 1.08998 * 110.24548 * 281.98734 * 21 20 19 39 39 H 1.08999 * 110.96980 * 267.29534 * 22 21 20 40 40 H 1.08999 * 111.00215 * 143.54782 * 22 21 20 41 41 H 1.09002 * 110.48237 * 216.52381 * 23 22 21 42 42 H 1.08997 * 110.49041 * 93.88346 * 23 22 21 43 43 H 1.07997 * 120.06370 * 359.97438 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1168 1.2511 -0.4764 5 6 1.6009 2.3043 0.6122 6 7 0.4924 2.1934 1.3131 7 14 2.4354 3.9667 0.4415 8 1 1.9029 4.6674 -0.7547 9 1 2.1671 4.7822 1.6532 10 1 3.8998 3.7721 0.2900 11 6 2.1975 -1.2687 -0.0006 12 6 2.4486 -1.7032 -1.4215 13 8 2.0548 -1.0201 -2.3431 14 7 3.1106 -2.8509 -1.6683 15 6 3.4286 -3.2062 -2.9838 16 6 2.5393 -2.9264 -4.0140 17 6 2.8523 -3.2773 -5.3130 18 6 4.0523 -3.9027 -5.5928 19 6 4.9433 -4.1900 -4.5665 20 7 6.1561 -4.8277 -4.8500 21 6 6.5324 -5.3412 -6.1724 22 6 8.0625 -5.5461 -6.1149 23 6 8.2965 -5.7498 -4.6000 24 6 7.1262 -5.0487 -3.9462 25 8 7.0694 -4.7361 -2.7757 26 6 4.6319 -3.8387 -3.2607 27 1 -0.3633 -0.0827 1.0243 28 1 -0.3634 0.9285 -0.4404 29 1 -0.3634 -0.8456 -0.5838 30 1 0.1090 2.9748 1.7412 31 1 1.6084 -2.0286 0.5130 32 1 3.1499 -1.1386 0.5132 33 1 3.3667 -3.4306 -0.9340 34 1 1.6022 -2.4347 -3.7991 35 1 2.1592 -3.0591 -6.1120 36 1 4.2961 -4.1718 -6.6098 37 1 6.2777 -4.6158 -6.9452 38 1 6.0317 -6.2900 -6.3650 39 1 8.5882 -4.6620 -6.4754 40 1 8.3596 -6.4308 -6.6779 41 1 9.2361 -5.2899 -4.2940 42 1 8.2919 -6.8113 -4.3526 43 1 5.3247 -4.0572 -2.4617 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355948543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:41 Heat of formation + Delta-G solvation = -25.581252 kcal Electronic energy + Delta-G solvation = -25928.695949 eV Core-core repulsion = 22167.126599 eV Total energy + Delta-G solvation = -3761.569350 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.13470 -41.17039 -39.27982 -37.73750 -37.08971 -35.69002 -33.90810 -33.37009 -31.22135 -30.00216 -28.89210 -28.39469 -27.86729 -24.63157 -24.22207 -23.48128 -22.06274 -21.70794 -20.47211 -19.08542 -18.75508 -18.22028 -17.67941 -17.33235 -17.20509 -16.65984 -16.44477 -16.26685 -15.59302 -15.29856 -15.21394 -14.89639 -14.84705 -14.61444 -14.43981 -14.33515 -13.79396 -13.69488 -13.50782 -13.18451 -12.93820 -12.85386 -12.67068 -12.60914 -12.39305 -12.29026 -12.16369 -12.05391 -11.92238 -11.49992 -11.03847 -10.81476 -10.70446 -10.58184 -9.39022 -8.85292 -8.76982 -7.92884 -5.47098 0.19831 0.30315 1.41526 1.44112 1.48177 1.52929 1.70111 1.79744 2.17906 2.47898 2.84088 3.24374 3.29794 3.56205 3.63321 3.91443 4.00132 4.07686 4.11764 4.17311 4.28215 4.43146 4.50644 4.53463 4.62898 4.64248 4.65774 4.76891 4.79696 4.86225 5.08886 5.11496 5.19856 5.24920 5.30872 5.40068 5.48267 5.53941 5.59699 5.64726 6.06710 6.09107 6.27309 6.52141 6.95419 7.07241 7.29339 7.73490 8.19772 9.12433 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.002742 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.357024 B =10210.429395 C =10621.540216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.593 5.593 3 C -0.268 4.268 4 H 0.052 0.948 5 C -0.041 4.041 6 N -0.930 5.930 7 Si 0.971 3.029 8 H -0.288 1.288 9 H -0.283 1.283 10 H -0.271 1.271 11 C 0.134 3.866 12 C 0.482 3.518 13 O -0.550 6.550 14 N -0.671 5.671 15 C 0.162 3.838 16 C -0.169 4.169 17 C -0.073 4.073 18 C -0.165 4.165 19 C 0.171 3.829 20 N -0.561 5.561 21 C 0.084 3.916 22 C -0.118 4.118 23 C -0.145 4.145 24 C 0.494 3.506 25 O -0.562 6.562 26 C -0.204 4.204 27 H 0.014 0.986 28 H 0.021 0.979 29 H 0.016 0.984 30 H 0.253 0.747 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.422 0.578 34 H 0.111 0.889 35 H 0.154 0.846 36 H 0.164 0.836 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.113 0.887 42 H 0.128 0.872 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.672 -22.564 -18.123 32.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.313 5.313 3 C -0.398 4.398 4 H 0.070 0.930 5 C -0.237 4.237 6 N -0.575 5.575 7 Si 0.798 3.202 8 H -0.215 1.215 9 H -0.209 1.209 10 H -0.196 1.196 11 C 0.002 3.998 12 C 0.269 3.731 13 O -0.425 6.425 14 N -0.319 5.319 15 C 0.067 3.933 16 C -0.190 4.190 17 C -0.092 4.092 18 C -0.185 4.185 19 C 0.076 3.924 20 N -0.284 5.284 21 C -0.036 4.036 22 C -0.155 4.155 23 C -0.185 4.185 24 C 0.285 3.715 25 O -0.441 6.441 26 C -0.227 4.227 27 H 0.032 0.968 28 H 0.040 0.960 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.259 0.741 34 H 0.129 0.871 35 H 0.171 0.829 36 H 0.181 0.819 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.109 0.891 40 H 0.148 0.852 41 H 0.131 0.869 42 H 0.146 0.854 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.245 -21.723 -17.990 31.599 hybrid contribution -0.045 1.087 0.721 1.305 sum 14.200 -20.635 -17.270 30.425 Atomic orbital electron populations 1.20535 0.82564 0.96675 0.96801 1.43669 1.02084 1.00903 1.84687 1.19265 1.02681 0.88904 1.28952 0.93033 1.25894 0.98589 1.02256 0.96963 1.70151 1.22109 1.29563 1.35703 0.85234 0.78481 0.79571 0.76898 1.21506 1.20858 1.19575 1.20907 0.99398 0.89608 0.89841 1.23456 0.75669 0.78978 0.95006 1.90614 1.49981 1.54427 1.47470 1.43792 1.57937 1.23234 1.06971 1.17834 0.93009 0.96884 0.85582 1.21268 1.00130 1.03796 0.93792 1.21128 0.96852 0.95605 0.95606 1.21006 0.94226 1.04263 0.99050 1.17621 0.86517 0.95211 0.93021 1.46098 1.14095 1.54418 1.13769 1.22698 0.97574 1.01401 0.81959 1.22692 0.92885 1.05952 0.93994 1.22421 0.95774 1.03211 0.97047 1.22220 0.85949 0.78039 0.85266 1.90622 1.81263 1.53870 1.18303 1.21254 0.96592 1.06999 0.97809 0.96758 0.95989 0.96573 0.93772 0.87739 0.88802 0.74064 0.87050 0.82878 0.81854 0.88022 0.88002 0.89094 0.85200 0.86903 0.85362 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.51 8.99 127.77 1.15 10.65 16 2 N -0.59 -31.96 2.39 -731.33 -1.75 -33.71 16 3 C -0.27 -15.88 9.58 84.03 0.81 -15.07 16 4 H 0.05 3.11 7.84 -2.91 -0.02 3.09 16 5 C -0.04 -2.41 5.14 84.86 0.44 -1.97 16 6 N -0.93 -56.51 10.95 21.65 0.24 -56.27 16 7 Si 0.97 47.53 29.56 68.60 2.03 49.56 16 8 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 9 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 10 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 11 C 0.13 5.60 6.17 85.63 0.53 6.13 16 12 C 0.48 20.22 7.73 87.66 0.68 20.89 16 13 O -0.55 -27.94 13.97 -3.06 -0.04 -27.98 16 14 N -0.67 -22.67 5.33 -303.56 -1.62 -24.29 16 15 C 0.16 5.55 6.26 38.14 0.24 5.79 16 16 C -0.17 -5.68 8.68 22.42 0.19 -5.49 16 17 C -0.07 -1.83 10.03 22.23 0.22 -1.60 16 18 C -0.16 -3.43 9.42 22.42 0.21 -3.22 16 19 C 0.17 4.30 6.59 38.13 0.25 4.55 16 20 N -0.56 -10.48 3.14 -627.75 -1.97 -12.45 16 21 C 0.08 0.58 6.50 86.83 0.56 1.14 16 22 C -0.12 -0.29 7.18 31.65 0.23 -0.07 16 23 C -0.14 -1.25 6.86 30.59 0.21 -1.04 16 24 C 0.49 10.49 7.92 87.90 0.70 11.18 16 25 O -0.56 -17.58 14.81 -3.06 -0.05 -17.62 16 26 C -0.20 -6.41 9.21 22.51 0.21 -6.20 16 27 H 0.01 0.77 7.76 -2.39 -0.02 0.75 16 28 H 0.02 1.26 7.06 -2.39 -0.02 1.24 16 29 H 0.02 0.76 8.11 -2.39 -0.02 0.74 16 30 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.10 3.64 8.07 -2.38 -0.02 3.62 16 32 H 0.09 3.72 8.04 -2.39 -0.02 3.70 16 33 H 0.42 11.20 8.83 -92.71 -0.82 10.38 16 34 H 0.11 4.35 6.35 -2.92 -0.02 4.33 16 35 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.16 1.98 6.74 -2.91 -0.02 1.96 16 37 H 0.10 0.45 7.23 -2.39 -0.02 0.43 16 38 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.13 -0.46 8.14 -2.39 -0.02 -0.48 16 41 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.14 4.86 5.24 -2.91 -0.02 4.84 16 Total: -1.00 -85.51 356.09 3.69 -81.83 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.22 Total: 15.26 kcal Atomic # 6 Polarization: 19.06 SS G_CDS: 6.62 Total: 25.68 kcal Atomic # 7 Polarization: -121.62 SS G_CDS: -5.10 Total: -126.72 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.09 Total: -45.60 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -85.51 3.69 -81.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355948543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.244 kcal (2) G-P(sol) polarization free energy of solvation -85.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds