Wall clock time and date at job start Tue Mar 31 2020 11:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00091 * 2 1 4 4 N 1.34780 * 120.00078 * 180.02562 * 2 1 3 5 5 C 1.39465 * 120.00293 * 183.09240 * 4 2 1 6 6 C 1.39407 * 120.38935 * 31.34844 * 5 4 2 7 7 C 1.38242 * 118.43847 * 179.97438 * 6 5 4 8 8 C 1.39578 * 119.14920 * 359.97438 * 7 6 5 9 9 C 1.47758 * 119.65465 * 179.97438 * 8 7 6 10 10 O 1.21598 * 119.99983 * 353.45806 * 9 8 7 11 11 N 1.34779 * 120.00344 * 173.45535 * 9 8 7 12 12 C 1.36816 * 119.99544 * 354.74316 * 11 9 8 13 13 H 1.07999 * 120.00160 * 120.16247 * 12 11 9 14 14 C 1.39079 * 120.00143 * 299.88047 * 12 11 9 15 15 N 1.31341 * 120.00428 * 170.44455 * 14 12 11 16 16 Si 1.86804 * 119.99931 * 350.44426 * 14 12 11 17 17 H 1.48506 * 109.46878 * 2.63309 * 16 14 12 18 18 H 1.48498 * 109.47056 * 122.63294 * 16 14 12 19 19 H 1.48500 * 109.47066 * 242.63526 * 16 14 12 20 20 C 1.46496 * 120.00506 * 174.74337 * 11 9 8 21 21 C 1.54263 * 110.03255 * 237.90917 * 20 11 9 22 22 C 1.54962 * 104.16095 * 217.13454 * 21 20 11 23 23 C 1.54886 * 102.77725 * 37.88585 * 22 21 20 24 24 C 1.53868 * 110.03384 * 120.68846 * 20 11 9 25 25 N 1.32877 * 120.69557 * 0.26093 * 8 7 6 26 26 C 1.31369 * 121.69481 * 359.46690 * 25 8 7 27 27 H 1.09002 * 109.46873 * 240.00200 * 1 2 3 28 28 H 1.08996 * 109.46568 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47337 * 120.00174 * 1 2 3 30 30 H 0.97006 * 119.99638 * 3.09046 * 4 2 1 31 31 H 1.07999 * 120.77621 * 359.95582 * 6 5 4 32 32 H 1.08001 * 120.42628 * 180.02562 * 7 6 5 33 33 H 0.96995 * 119.99726 * 0.02562 * 15 14 12 34 34 H 1.09006 * 110.01597 * 359.29305 * 20 11 9 35 35 H 1.08997 * 110.48788 * 335.77957 * 21 20 11 36 36 H 1.09005 * 110.49138 * 98.42268 * 21 20 11 37 37 H 1.08999 * 110.71824 * 279.57446 * 22 21 20 38 38 H 1.09001 * 110.92580 * 156.29398 * 22 21 20 39 39 H 1.09000 * 110.48530 * 203.41030 * 23 22 21 40 40 H 1.09001 * 110.59806 * 80.81548 * 23 22 21 41 41 H 1.09003 * 110.03178 * 238.56995 * 24 20 11 42 42 H 1.08999 * 110.03689 * 359.95266 * 24 20 11 43 43 H 1.07997 * 119.59733 * 180.27611 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5740 -1.1682 0.0646 6 6 4.2486 -0.1592 0.7504 7 6 5.6299 -0.2000 0.7899 8 6 6.2979 -1.2431 0.1466 9 6 7.7741 -1.2973 0.1812 10 8 8.4052 -0.3766 0.6636 11 7 8.4212 -2.3672 -0.3218 12 6 7.7115 -3.4492 -0.7661 13 1 7.7977 -3.7662 -1.7949 14 6 6.8835 -4.1446 0.1087 15 7 6.0623 -5.0602 -0.3522 16 14 6.9393 -3.7764 1.9392 17 1 7.8941 -2.6674 2.1921 18 1 5.5863 -3.3808 2.4060 19 1 7.3821 -4.9881 2.6746 20 6 9.8845 -2.3716 -0.3929 21 6 10.3421 -2.5822 -1.8510 22 6 11.6021 -3.4757 -1.7276 23 6 11.2287 -4.4367 -0.5718 24 6 10.4482 -3.5499 0.4204 25 7 5.6206 -2.1849 -0.5014 26 6 4.3080 -2.1786 -0.5538 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3632 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 1.6969 -2.0067 -0.0462 31 1 3.7049 0.6357 1.2391 32 1 6.1850 0.5651 1.3125 33 1 6.0336 -5.2517 -1.3026 34 1 10.2795 -1.4306 -0.0099 35 1 9.5677 -3.0921 -2.4240 36 1 10.5940 -1.6278 -2.3134 37 1 12.4749 -2.8776 -1.4659 38 1 11.7779 -4.0302 -2.6494 39 1 12.1277 -4.8352 -0.1015 40 1 10.5981 -5.2478 -0.9359 41 1 11.1174 -3.1809 1.1976 42 1 9.6331 -4.1181 0.8687 43 1 3.7916 -2.9635 -1.0864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360032438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:57 Heat of formation + Delta-G solvation = -11.487237 kcal Electronic energy + Delta-G solvation = -27464.744087 eV Core-core repulsion = 23703.785900 eV Total energy + Delta-G solvation = -3760.958187 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59575 -39.52959 -38.32128 -36.67672 -34.92531 -34.11306 -31.69140 -31.51585 -30.79580 -28.89218 -28.06887 -27.01628 -24.34455 -23.58880 -22.90910 -20.84331 -20.28085 -20.04361 -19.01263 -17.92821 -17.50235 -16.91928 -16.21961 -15.89743 -15.48955 -15.01193 -14.80488 -14.55472 -14.17953 -13.98184 -13.55023 -13.49685 -13.28893 -12.96496 -12.80314 -12.71050 -12.52010 -12.34046 -12.07009 -11.86437 -11.15205 -11.13956 -10.85353 -10.56746 -10.50318 -10.32199 -10.12459 -10.10643 -10.04519 -9.90248 -9.35964 -9.15708 -9.14173 -8.90041 -8.04166 -7.84052 -7.52120 -6.51422 -3.98369 1.23713 1.92117 2.52611 3.05959 3.28540 3.34184 3.49030 3.70063 4.29543 4.36038 4.56698 4.75110 4.99579 5.11309 5.13960 5.20821 5.26338 5.31948 5.35583 5.43199 5.50502 5.60564 5.68600 5.83243 6.02828 6.15686 6.17235 6.20318 6.23482 6.31058 6.40030 6.43320 6.47173 6.54721 6.60877 6.68117 6.88894 6.96302 7.05992 7.21493 7.36721 7.87269 8.04259 8.18604 8.61992 8.75707 8.95932 9.43764 9.86741 10.78866 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.004298 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.784744 B = 6512.362885 C = 6911.620236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.528 6.528 4 N -0.664 5.664 5 C 0.087 3.913 6 C -0.099 4.099 7 C -0.116 4.116 8 C 0.076 3.924 9 C 0.530 3.470 10 O -0.595 6.595 11 N -0.439 5.439 12 C -0.380 4.380 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.876 5.876 16 Si 1.011 2.989 17 H -0.270 1.270 18 H -0.287 1.287 19 H -0.284 1.284 20 C 0.126 3.874 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.115 4.115 24 C -0.125 4.125 25 N -0.350 5.350 26 C 0.073 3.927 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.413 0.587 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.274 0.726 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 2.254 -0.216 6.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.404 6.404 4 N -0.309 5.309 5 C -0.010 4.010 6 C -0.127 4.127 7 C -0.137 4.137 8 C -0.063 4.063 9 C 0.320 3.680 10 O -0.480 6.480 11 N -0.158 5.158 12 C -0.508 4.508 13 H 0.097 0.903 14 C -0.135 4.135 15 N -0.509 5.509 16 Si 0.840 3.160 17 H -0.195 1.195 18 H -0.213 1.213 19 H -0.211 1.211 20 C 0.023 3.977 21 C -0.164 4.164 22 C -0.158 4.158 23 C -0.153 4.153 24 C -0.164 4.164 25 N -0.059 5.059 26 C -0.090 4.090 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.109 0.891 30 H 0.249 0.751 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.845 2.372 1.047 6.394 hybrid contribution -0.394 0.446 -1.010 1.173 sum -6.239 2.818 0.037 6.846 Atomic orbital electron populations 1.21915 0.90861 1.05792 1.04552 1.21018 0.90852 0.83246 0.75463 1.90738 1.70564 1.31297 1.47817 1.43424 1.05054 1.09840 1.72617 1.19183 0.83200 0.98900 0.99681 1.21393 0.93909 0.99075 0.98320 1.22022 0.93791 0.99053 0.98876 1.21385 0.95405 0.92046 0.97464 1.18275 0.85683 0.82302 0.81771 1.90615 1.67449 1.38812 1.51075 1.43649 1.03658 1.14031 1.54478 1.19939 1.25999 1.07757 0.97134 0.90275 1.25904 0.91542 0.92323 1.03695 1.70638 1.32116 1.30853 1.17263 0.84330 0.77267 0.77195 0.77244 1.19504 1.21294 1.21091 1.21766 0.83216 0.98210 0.94545 1.22624 0.97379 0.98891 0.97472 1.22422 0.97480 0.97632 0.98251 1.22247 0.98817 0.98124 0.96115 1.22359 0.99361 0.97032 0.97607 1.69198 1.05680 1.19338 1.11700 1.23079 0.90983 0.97276 0.97670 0.89073 0.88711 0.89099 0.75134 0.83922 0.84110 0.91464 0.90045 0.90205 0.92771 0.92272 0.92269 0.92771 0.91322 0.92810 0.90654 0.82982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.32 36.01 0.37 -0.84 16 2 C 0.51 6.37 7.74 -10.98 -0.08 6.29 16 3 O -0.53 -9.01 14.58 5.56 0.08 -8.92 16 4 N -0.66 -8.52 5.34 -9.73 -0.05 -8.57 16 5 C 0.09 1.53 6.35 -83.53 -0.53 1.00 16 6 C -0.10 -1.88 8.76 -39.14 -0.34 -2.22 16 7 C -0.12 -2.45 9.62 -39.08 -0.38 -2.82 16 8 C 0.08 1.80 4.69 -83.02 -0.39 1.41 16 9 C 0.53 13.52 5.27 -12.37 -0.07 13.45 16 10 O -0.59 -15.83 15.70 5.28 0.08 -15.75 16 11 N -0.44 -10.74 1.76 -107.64 -0.19 -10.93 16 12 C -0.38 -9.61 6.38 -15.02 -0.10 -9.71 16 13 H 0.08 2.13 7.04 -52.49 -0.37 1.76 16 14 C 0.08 1.98 3.22 -17.45 -0.06 1.92 16 15 N -0.88 -23.11 13.66 55.50 0.76 -22.35 16 16 Si 1.01 25.18 24.01 -169.99 -4.08 21.10 16 17 H -0.27 -6.89 6.00 56.52 0.34 -6.55 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 C 0.13 2.71 3.29 -66.82 -0.22 2.49 16 21 C -0.13 -2.34 6.42 -25.03 -0.16 -2.50 16 22 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 23 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16 24 C -0.13 -2.46 6.27 -25.61 -0.16 -2.62 16 25 N -0.35 -8.14 5.09 -9.65 -0.05 -8.19 16 26 C 0.07 1.44 11.11 -17.33 -0.19 1.25 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.67 8.12 -51.93 -0.42 0.24 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.41 3.79 8.81 -40.82 -0.36 3.43 16 31 H 0.14 2.55 6.28 -52.49 -0.33 2.22 16 32 H 0.14 2.83 7.65 -52.49 -0.40 2.43 16 33 H 0.27 7.19 8.73 -40.82 -0.36 6.84 16 34 H 0.08 1.81 6.96 -51.93 -0.36 1.45 16 35 H 0.08 1.63 6.45 -51.93 -0.33 1.29 16 36 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.66 5.51 -51.93 -0.29 1.38 16 43 H 0.15 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -32.06 342.27 -6.82 -38.88 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.88 Total: 6.61 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -2.64 Total: 2.97 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.47 Total: -50.04 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: 0.16 Total: -24.68 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -4.08 Total: 21.10 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.06 -6.82 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360032438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.391 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds