Wall clock time and date at job start Tue Mar 31 2020 11:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00091 * 2 1 4 4 N 1.34780 * 120.00078 * 180.02562 * 2 1 3 5 5 C 1.39465 * 120.00293 * 183.09240 * 4 2 1 6 6 C 1.39407 * 120.38935 * 31.34844 * 5 4 2 7 7 C 1.38242 * 118.43847 * 179.97438 * 6 5 4 8 8 C 1.39578 * 119.14920 * 359.97438 * 7 6 5 9 9 C 1.47758 * 119.65465 * 179.97438 * 8 7 6 10 10 O 1.21598 * 119.99983 * 353.45806 * 9 8 7 11 11 N 1.34779 * 120.00344 * 173.45535 * 9 8 7 12 12 C 1.36816 * 119.99544 * 354.74316 * 11 9 8 13 13 H 1.07999 * 120.00160 * 120.16247 * 12 11 9 14 14 C 1.39079 * 120.00143 * 299.88047 * 12 11 9 15 15 N 1.31341 * 120.00428 * 170.44455 * 14 12 11 16 16 Si 1.86804 * 119.99931 * 350.44426 * 14 12 11 17 17 H 1.48506 * 109.46878 * 2.63309 * 16 14 12 18 18 H 1.48498 * 109.47056 * 122.63294 * 16 14 12 19 19 H 1.48500 * 109.47066 * 242.63526 * 16 14 12 20 20 C 1.46496 * 120.00506 * 174.74337 * 11 9 8 21 21 C 1.54263 * 110.03255 * 237.90917 * 20 11 9 22 22 C 1.54962 * 104.16095 * 217.13454 * 21 20 11 23 23 C 1.54886 * 102.77725 * 37.88585 * 22 21 20 24 24 C 1.53868 * 110.03384 * 120.68846 * 20 11 9 25 25 N 1.32877 * 120.69557 * 0.26093 * 8 7 6 26 26 C 1.31369 * 121.69481 * 359.46690 * 25 8 7 27 27 H 1.09002 * 109.46873 * 240.00200 * 1 2 3 28 28 H 1.08996 * 109.46568 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47337 * 120.00174 * 1 2 3 30 30 H 0.97006 * 119.99638 * 3.09046 * 4 2 1 31 31 H 1.07999 * 120.77621 * 359.95582 * 6 5 4 32 32 H 1.08001 * 120.42628 * 180.02562 * 7 6 5 33 33 H 0.96995 * 119.99726 * 0.02562 * 15 14 12 34 34 H 1.09006 * 110.01597 * 359.29305 * 20 11 9 35 35 H 1.08997 * 110.48788 * 335.77957 * 21 20 11 36 36 H 1.09005 * 110.49138 * 98.42268 * 21 20 11 37 37 H 1.08999 * 110.71824 * 279.57446 * 22 21 20 38 38 H 1.09001 * 110.92580 * 156.29398 * 22 21 20 39 39 H 1.09000 * 110.48530 * 203.41030 * 23 22 21 40 40 H 1.09001 * 110.59806 * 80.81548 * 23 22 21 41 41 H 1.09003 * 110.03178 * 238.56995 * 24 20 11 42 42 H 1.08999 * 110.03689 * 359.95266 * 24 20 11 43 43 H 1.07997 * 119.59733 * 180.27611 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5740 -1.1682 0.0646 6 6 4.2486 -0.1592 0.7504 7 6 5.6299 -0.2000 0.7899 8 6 6.2979 -1.2431 0.1466 9 6 7.7741 -1.2973 0.1812 10 8 8.4052 -0.3766 0.6636 11 7 8.4212 -2.3672 -0.3218 12 6 7.7115 -3.4492 -0.7661 13 1 7.7977 -3.7662 -1.7949 14 6 6.8835 -4.1446 0.1087 15 7 6.0623 -5.0602 -0.3522 16 14 6.9393 -3.7764 1.9392 17 1 7.8941 -2.6674 2.1921 18 1 5.5863 -3.3808 2.4060 19 1 7.3821 -4.9881 2.6746 20 6 9.8845 -2.3716 -0.3929 21 6 10.3421 -2.5822 -1.8510 22 6 11.6021 -3.4757 -1.7276 23 6 11.2287 -4.4367 -0.5718 24 6 10.4482 -3.5499 0.4204 25 7 5.6206 -2.1849 -0.5014 26 6 4.3080 -2.1786 -0.5538 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3632 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8899 30 1 1.6969 -2.0067 -0.0462 31 1 3.7049 0.6357 1.2391 32 1 6.1850 0.5651 1.3125 33 1 6.0336 -5.2517 -1.3026 34 1 10.2795 -1.4306 -0.0099 35 1 9.5677 -3.0921 -2.4240 36 1 10.5940 -1.6278 -2.3134 37 1 12.4749 -2.8776 -1.4659 38 1 11.7779 -4.0302 -2.6494 39 1 12.1277 -4.8352 -0.1015 40 1 10.5981 -5.2478 -0.9359 41 1 11.1174 -3.1809 1.1976 42 1 9.6331 -4.1181 0.8687 43 1 3.7916 -2.9635 -1.0864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360032438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:56 Heat of formation + Delta-G solvation = -32.800133 kcal Electronic energy + Delta-G solvation = -27465.668284 eV Core-core repulsion = 23703.785900 eV Total energy + Delta-G solvation = -3761.882384 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04580 -41.09250 -39.84341 -38.36332 -36.36169 -35.82015 -33.55913 -33.14313 -32.02739 -30.04398 -29.55080 -28.53591 -26.21355 -25.20533 -24.46753 -22.27917 -21.72128 -21.46583 -20.80128 -19.55872 -18.90784 -18.26160 -17.85503 -17.58109 -16.86905 -16.57814 -16.43443 -16.07982 -15.67555 -15.45581 -15.35894 -15.00114 -14.92463 -14.44894 -14.33321 -14.07585 -13.94340 -13.55675 -13.32595 -13.13795 -12.86020 -12.76274 -12.47986 -12.17399 -11.91308 -11.87580 -11.83586 -11.75273 -11.37655 -11.35802 -11.19978 -10.94158 -10.88072 -10.68873 -9.78263 -9.57214 -9.26417 -8.53629 -5.99901 -0.36141 0.33070 1.27957 1.30596 1.42706 1.49718 1.92934 1.98810 2.29145 2.59109 3.02334 3.24477 3.49835 3.68929 3.79732 3.80230 3.86371 3.95814 4.03619 4.17818 4.23557 4.54020 4.56604 4.62373 4.65920 4.67961 4.70843 4.73624 4.88433 4.88774 5.00665 5.02750 5.05016 5.12703 5.17641 5.22106 5.37570 5.43289 5.55114 5.70821 5.93170 6.17101 6.33171 6.67017 6.88658 7.02706 7.11718 7.50365 7.90286 8.74748 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022185 B = 0.004298 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.784744 B = 6512.362885 C = 6911.620236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.503 3.497 3 O -0.575 6.575 4 N -0.652 5.652 5 C 0.114 3.886 6 C -0.103 4.103 7 C -0.116 4.116 8 C 0.038 3.962 9 C 0.518 3.482 10 O -0.619 6.619 11 N -0.445 5.445 12 C -0.366 4.366 13 H 0.058 0.942 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 1.035 2.965 17 H -0.286 1.286 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.114 3.886 21 C -0.122 4.122 22 C -0.107 4.107 23 C -0.109 4.109 24 C -0.127 4.127 25 N -0.377 5.377 26 C 0.062 3.938 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.433 0.567 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.270 0.730 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 1.837 -0.292 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.295 3.705 3 O -0.453 6.453 4 N -0.299 5.299 5 C 0.015 3.985 6 C -0.131 4.131 7 C -0.138 4.138 8 C -0.100 4.100 9 C 0.308 3.692 10 O -0.506 6.506 11 N -0.164 5.164 12 C -0.494 4.494 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.523 5.523 16 Si 0.863 3.137 17 H -0.212 1.212 18 H -0.214 1.214 19 H -0.202 1.202 20 C 0.011 3.989 21 C -0.160 4.160 22 C -0.145 4.145 23 C -0.147 4.147 24 C -0.165 4.165 25 N -0.087 5.087 26 C -0.102 4.102 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.137 0.863 30 H 0.273 0.727 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.214 1.912 0.964 7.525 hybrid contribution -0.131 0.695 -1.019 1.240 sum -7.345 2.606 -0.055 7.794 Atomic orbital electron populations 1.21964 0.85721 1.06895 1.07183 1.22150 0.93019 0.81969 0.73390 1.90730 1.71943 1.32939 1.49737 1.43515 1.02923 1.11528 1.71970 1.19160 0.85621 0.96979 0.96730 1.21537 0.93059 0.99857 0.98660 1.22104 0.94913 0.98321 0.98464 1.21210 0.94672 0.93792 1.00287 1.18708 0.86842 0.82210 0.81408 1.90564 1.68306 1.39548 1.52161 1.43777 1.04917 1.13545 1.54129 1.19563 1.26316 1.07515 0.96001 0.92411 1.26125 0.91375 0.92288 1.04518 1.70655 1.32934 1.31842 1.16896 0.83976 0.76646 0.76669 0.76387 1.21223 1.21416 1.20237 1.22037 0.81583 0.98526 0.96801 1.22571 0.98415 0.99854 0.95159 1.22400 0.96333 0.96957 0.98779 1.22219 0.99317 0.97332 0.95799 1.22377 0.99096 0.96537 0.98521 1.68960 1.07572 1.19820 1.12324 1.23356 0.90151 0.98445 0.98246 0.86272 0.88465 0.86288 0.72653 0.82686 0.84018 0.91982 0.91276 0.92495 0.92057 0.89939 0.90213 0.89591 0.92769 0.91219 0.93450 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.32 71.24 0.74 -0.81 16 2 C 0.50 11.22 7.74 87.66 0.68 11.90 16 3 O -0.57 -18.67 14.58 -3.03 -0.04 -18.72 16 4 N -0.65 -14.89 5.34 -303.09 -1.62 -16.51 16 5 C 0.11 3.86 6.35 38.48 0.24 4.10 16 6 C -0.10 -3.86 8.76 22.55 0.20 -3.67 16 7 C -0.12 -5.02 9.62 22.59 0.22 -4.80 16 8 C 0.04 1.85 4.69 41.83 0.20 2.05 16 9 C 0.52 27.43 5.27 86.76 0.46 27.89 16 10 O -0.62 -34.29 15.70 -4.03 -0.06 -34.36 16 11 N -0.45 -22.52 1.76 -612.74 -1.08 -23.60 16 12 C -0.37 -19.08 6.38 84.12 0.54 -18.55 16 13 H 0.06 3.25 7.04 -2.91 -0.02 3.23 16 14 C 0.07 3.46 3.22 84.97 0.27 3.74 16 15 N -0.89 -47.34 13.66 21.68 0.30 -47.04 16 16 Si 1.03 52.00 24.01 68.60 1.65 53.65 16 17 H -0.29 -15.07 6.00 99.48 0.60 -14.48 16 18 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 19 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 20 C 0.11 4.97 3.29 45.71 0.15 5.12 16 21 C -0.12 -4.54 6.42 31.69 0.20 -4.34 16 22 C -0.11 -3.08 6.91 31.91 0.22 -2.86 16 23 C -0.11 -3.44 6.83 31.67 0.22 -3.23 16 24 C -0.13 -4.98 6.27 31.32 0.20 -4.78 16 25 N -0.38 -17.85 5.09 -184.46 -0.94 -18.79 16 26 C 0.06 2.41 11.11 85.03 0.95 3.36 16 27 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 1.00 8.12 -2.39 -0.02 0.98 16 29 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.43 6.37 8.81 -92.70 -0.82 5.55 16 31 H 0.16 5.41 6.28 -2.91 -0.02 5.39 16 32 H 0.14 5.92 7.65 -2.91 -0.02 5.90 16 33 H 0.27 14.35 8.73 -92.71 -0.81 13.54 16 34 H 0.07 3.15 6.96 -2.38 -0.02 3.14 16 35 H 0.06 2.38 6.45 -2.39 -0.02 2.36 16 36 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.05 2.12 5.51 -2.39 -0.01 2.10 16 43 H 0.17 5.82 8.06 -2.91 -0.02 5.80 16 Total: -1.00 -72.94 342.27 3.75 -69.18 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.08 Total: 21.06 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 5.47 Total: 15.11 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -3.34 Total: -105.93 kcal Atomic # 8 Polarization: -52.96 SS G_CDS: -0.11 Total: -53.07 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 1.65 Total: 53.65 kcal Total: -72.94 3.75 -69.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360032438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.383 kcal (2) G-P(sol) polarization free energy of solvation -72.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds