Wall clock time and date at job start Tue Mar 31 2020 11:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99526 * 2 1 4 4 O 1.21284 * 119.99706 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00561 * 359.97438 * 3 2 1 6 6 C 1.52998 * 109.47463 * 179.97438 * 5 3 2 7 7 C 1.50698 * 109.47463 * 179.97438 * 6 5 3 8 8 H 1.08004 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00466 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99656 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00304 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47163 * 60.00132 * 11 9 7 13 13 H 1.48504 * 109.47233 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47158 * 299.99900 * 11 9 7 15 15 C 1.46499 * 120.00061 * 180.02562 * 2 1 3 16 16 H 1.09001 * 109.46813 * 179.97438 * 15 2 1 17 17 C 1.53000 * 109.46840 * 299.99664 * 15 2 1 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 15 2 19 19 C 1.53006 * 109.47127 * 300.00449 * 18 17 15 20 20 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 21 21 C 1.52996 * 109.47185 * 59.99783 * 15 2 1 22 22 H 1.08992 * 109.47554 * 299.99819 * 21 15 2 23 23 S 1.81401 * 109.47015 * 60.00262 * 21 15 2 24 24 C 1.81400 * 101.92288 * 179.97438 * 23 21 15 25 25 O 1.42104 * 108.57706 * 294.48395 * 23 21 15 26 26 O 1.42103 * 108.57865 * 65.51046 * 23 21 15 27 27 H 1.09003 * 109.47226 * 269.99731 * 1 2 3 28 28 H 1.08998 * 109.47196 * 30.00020 * 1 2 3 29 29 H 1.08996 * 109.46977 * 149.99924 * 1 2 3 30 30 H 1.09000 * 109.47451 * 300.00291 * 5 3 2 31 31 H 1.09003 * 109.46928 * 60.00337 * 5 3 2 32 32 H 1.08995 * 109.47765 * 300.00568 * 6 5 3 33 33 H 1.09003 * 109.46436 * 60.00449 * 6 5 3 34 34 H 0.97004 * 119.99870 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47398 * 300.00326 * 17 15 2 36 36 H 1.09001 * 109.47194 * 60.00507 * 17 15 2 37 37 H 1.08998 * 109.47533 * 59.99948 * 18 17 15 38 38 H 1.08996 * 109.47853 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 40 40 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.47045 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.47375 * 59.99966 * 20 19 18 43 43 H 1.09004 * 109.46842 * 59.99500 * 24 23 21 44 44 H 1.08994 * 109.47722 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.47252 * 300.00113 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6353 0.0002 7 6 1.6260 4.9404 -0.0010 8 1 0.5460 4.9404 -0.0018 9 6 2.3153 6.1344 -0.0011 10 7 3.6305 6.1344 -0.0007 11 14 1.3813 7.7521 -0.0019 12 1 0.5272 7.8311 1.2102 13 1 2.3463 8.8809 -0.0026 14 1 0.5280 7.8304 -1.2148 15 6 2.1975 -1.2687 -0.0006 16 1 3.2692 -1.0695 -0.0009 17 6 1.8279 -2.0715 1.2484 18 6 2.5934 -3.3962 1.2482 19 6 2.2244 -4.1983 -0.0015 20 6 2.5940 -3.3954 -1.2504 21 6 1.8279 -2.0705 -1.2501 22 1 0.7564 -2.2697 -1.2502 23 16 2.2662 -1.1186 -2.7308 24 6 1.7510 -2.2381 -4.0620 25 8 1.4529 0.0457 -2.7777 26 8 3.6796 -0.9801 -2.7781 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 0.7590 2.5299 -0.8908 31 1 0.7584 2.5303 0.8892 32 1 3.0056 3.5776 0.8905 33 1 3.0068 3.5775 -0.8894 34 1 4.1155 6.9745 -0.0012 35 1 2.0912 -1.5003 2.1386 36 1 0.7563 -2.2707 1.2483 37 1 3.6650 -3.1967 1.2484 38 1 2.3299 -3.9684 2.1376 39 1 1.1528 -4.3979 -0.0018 40 1 2.7701 -5.1418 -0.0019 41 1 2.3307 -3.9667 -2.1406 42 1 3.6656 -3.1958 -1.2501 43 1 0.6817 -2.4327 -3.9796 44 1 1.9627 -1.7772 -5.0268 45 1 2.2986 -3.1769 -3.9795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361886847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:31 Heat of formation + Delta-G solvation = -116.998924 kcal Electronic energy + Delta-G solvation = -26480.527108 eV Core-core repulsion = 22818.144790 eV Total energy + Delta-G solvation = -3662.382317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.11279 -38.09464 -36.93038 -35.92167 -34.83820 -33.38112 -31.65035 -31.20540 -29.78002 -29.55229 -26.68311 -25.62841 -23.45465 -22.98691 -21.13439 -20.13573 -18.82636 -18.56830 -17.18297 -16.89081 -16.43436 -16.08853 -15.75901 -15.47171 -15.15041 -14.58972 -14.36596 -14.32015 -14.13015 -13.68362 -13.49231 -13.34450 -13.01095 -12.78277 -12.68835 -12.25809 -12.07089 -12.02578 -11.96835 -11.92037 -11.86358 -11.58354 -11.46845 -11.03426 -11.01548 -10.97731 -10.82995 -10.69097 -10.52106 -10.14457 -9.80331 -9.51498 -9.07992 -8.90208 -8.48491 -8.21217 -5.85499 -3.89349 -0.11723 2.65558 3.14492 3.25535 3.41452 3.45522 3.47742 3.60837 3.83964 4.15568 4.26793 4.48894 4.55769 4.56185 4.68206 4.71177 4.88553 4.92897 4.94449 5.10879 5.23268 5.27397 5.39783 5.42076 5.46956 5.49031 5.61478 5.63993 5.68638 5.79097 5.83361 5.87790 5.96160 6.10465 6.34817 6.44447 6.71584 7.02508 7.71881 7.85473 8.00484 8.19479 8.49631 8.78329 9.18773 9.73157 11.25602 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.003776 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.719357 B = 7413.809541 C = 8014.187371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.634 5.634 3 C 0.517 3.483 4 O -0.528 6.528 5 C -0.127 4.127 6 C 0.036 3.964 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.890 5.890 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.157 3.843 16 H 0.116 0.884 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.585 4.585 22 H 0.137 0.863 23 S 2.413 3.587 24 C -0.666 4.666 25 O -0.916 6.916 26 O -0.924 6.924 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.198 -26.429 -2.831 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.370 5.370 3 C 0.308 3.692 4 O -0.402 6.402 5 C -0.166 4.166 6 C -0.002 4.002 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.529 5.529 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C 0.052 3.948 16 H 0.134 0.866 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.695 4.695 22 H 0.155 0.845 23 S 2.593 3.407 24 C -0.814 4.814 25 O -0.913 6.913 26 O -0.921 6.921 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.996 -25.412 -2.931 26.520 hybrid contribution -1.114 0.015 -0.074 1.116 sum -8.109 -25.398 -3.005 26.830 Atomic orbital electron populations 1.21725 0.79554 1.03385 1.01376 1.48258 1.07233 1.05061 1.76438 1.21724 0.88468 0.85565 0.73486 1.90693 1.14262 1.87050 1.48202 1.21887 1.00782 0.91428 1.02527 1.18920 0.93253 0.89405 0.98606 1.21185 0.92876 0.91016 1.51172 0.92664 1.25021 0.94813 0.99132 0.95442 1.70001 1.06029 1.26549 1.50322 0.86659 0.79528 0.83276 0.78480 1.20321 1.21350 1.20267 1.20618 0.99604 0.83033 0.91531 0.86647 1.21784 1.00724 0.95799 0.97230 1.21550 1.00977 0.95586 0.97792 1.21463 1.01608 0.98073 0.93730 1.21454 1.00933 0.92121 1.00080 1.30658 1.10672 1.09886 1.18248 0.84482 1.08368 0.76538 0.77431 0.78344 1.30420 1.12500 1.18029 1.20437 1.93632 1.70549 1.41868 1.85266 1.93620 1.28069 1.85018 1.85425 0.92829 0.89618 0.92145 0.89461 0.90375 0.95925 0.95698 0.92982 0.90685 0.91336 0.91254 0.91331 0.91596 0.91199 0.90566 0.89393 0.85560 0.85329 0.85535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 8.99 59.85 0.54 1.49 16 2 N -0.63 -9.74 1.58 -173.94 -0.27 -10.02 16 3 C 0.52 10.93 7.16 -10.99 -0.08 10.86 16 4 O -0.53 -13.32 15.31 5.55 0.09 -13.24 16 5 C -0.13 -2.83 4.19 -27.88 -0.12 -2.94 16 6 C 0.04 1.02 4.26 -27.88 -0.12 0.91 16 7 C -0.52 -15.55 9.11 -34.44 -0.31 -15.87 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -28.45 13.29 55.43 0.74 -27.71 16 11 Si 0.89 22.39 29.54 -169.99 -5.02 17.36 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.16 2.01 1.96 -67.93 -0.13 1.88 16 16 H 0.12 1.82 6.90 -51.93 -0.36 1.46 16 17 C -0.12 -1.12 5.20 -26.73 -0.14 -1.26 16 18 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 19 C -0.11 -0.66 5.92 -26.73 -0.16 -0.81 16 20 C -0.11 -0.74 4.95 -26.71 -0.13 -0.87 16 21 C -0.59 -5.44 1.94 -26.71 -0.05 -5.50 16 22 H 0.14 0.83 6.66 -51.93 -0.35 0.49 16 23 S 2.41 30.42 4.76 -107.50 -0.51 29.91 16 24 C -0.67 -4.63 10.17 101.05 1.03 -3.60 16 25 O -0.92 -15.06 16.27 -57.83 -0.94 -16.01 16 26 O -0.92 -15.85 17.91 -57.83 -1.04 -16.88 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 1.07 6.44 -51.93 -0.33 0.73 16 29 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 30 H 0.09 1.86 7.40 -51.93 -0.38 1.48 16 31 H 0.08 1.56 8.11 -51.93 -0.42 1.14 16 32 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.02 0.79 8.10 -51.93 -0.42 0.36 16 34 H 0.26 7.81 8.31 -40.82 -0.34 7.48 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.30 6.56 -51.93 -0.34 -0.04 16 42 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 43 H 0.13 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.13 0.58 6.87 -51.92 -0.36 0.22 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -40.47 363.69 -8.87 -49.34 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.46 Total: -3.07 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 0.07 Total: -15.18 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.46 Total: -37.73 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.89 Total: -46.12 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 30.42 SS G_CDS: -0.51 Total: 29.91 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -40.47 -8.87 -49.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361886847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.661 kcal (2) G-P(sol) polarization free energy of solvation -40.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds