Wall clock time and date at job start Tue Mar 31 2020 11:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99526 * 2 1 4 4 O 1.21284 * 119.99706 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00561 * 359.97438 * 3 2 1 6 6 C 1.52998 * 109.47463 * 179.97438 * 5 3 2 7 7 C 1.50698 * 109.47463 * 179.97438 * 6 5 3 8 8 H 1.08004 * 119.99861 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00466 * 180.02562 * 7 6 5 10 10 N 1.31520 * 119.99656 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00304 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47163 * 60.00132 * 11 9 7 13 13 H 1.48504 * 109.47233 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47158 * 299.99900 * 11 9 7 15 15 C 1.46499 * 120.00061 * 180.02562 * 2 1 3 16 16 H 1.09001 * 109.46813 * 179.97438 * 15 2 1 17 17 C 1.53000 * 109.46840 * 299.99664 * 15 2 1 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 15 2 19 19 C 1.53006 * 109.47127 * 300.00449 * 18 17 15 20 20 C 1.52997 * 109.47164 * 59.99836 * 19 18 17 21 21 C 1.52996 * 109.47185 * 59.99783 * 15 2 1 22 22 H 1.08992 * 109.47554 * 299.99819 * 21 15 2 23 23 S 1.81401 * 109.47015 * 60.00262 * 21 15 2 24 24 C 1.81400 * 101.92288 * 179.97438 * 23 21 15 25 25 O 1.42104 * 108.57706 * 294.48395 * 23 21 15 26 26 O 1.42103 * 108.57865 * 65.51046 * 23 21 15 27 27 H 1.09003 * 109.47226 * 269.99731 * 1 2 3 28 28 H 1.08998 * 109.47196 * 30.00020 * 1 2 3 29 29 H 1.08996 * 109.46977 * 149.99924 * 1 2 3 30 30 H 1.09000 * 109.47451 * 300.00291 * 5 3 2 31 31 H 1.09003 * 109.46928 * 60.00337 * 5 3 2 32 32 H 1.08995 * 109.47765 * 300.00568 * 6 5 3 33 33 H 1.09003 * 109.46436 * 60.00449 * 6 5 3 34 34 H 0.97004 * 119.99870 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47398 * 300.00326 * 17 15 2 36 36 H 1.09001 * 109.47194 * 60.00507 * 17 15 2 37 37 H 1.08998 * 109.47533 * 59.99948 * 18 17 15 38 38 H 1.08996 * 109.47853 * 180.02562 * 18 17 15 39 39 H 1.09001 * 109.47002 * 299.99574 * 19 18 17 40 40 H 1.09000 * 109.47050 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.47045 * 180.02562 * 20 19 18 42 42 H 1.09001 * 109.47375 * 59.99966 * 20 19 18 43 43 H 1.09004 * 109.46842 * 59.99500 * 24 23 21 44 44 H 1.08994 * 109.47722 * 179.97438 * 24 23 21 45 45 H 1.09001 * 109.47252 * 300.00113 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6353 0.0002 7 6 1.6260 4.9404 -0.0010 8 1 0.5460 4.9404 -0.0018 9 6 2.3153 6.1344 -0.0011 10 7 3.6305 6.1344 -0.0007 11 14 1.3813 7.7521 -0.0019 12 1 0.5272 7.8311 1.2102 13 1 2.3463 8.8809 -0.0026 14 1 0.5280 7.8304 -1.2148 15 6 2.1975 -1.2687 -0.0006 16 1 3.2692 -1.0695 -0.0009 17 6 1.8279 -2.0715 1.2484 18 6 2.5934 -3.3962 1.2482 19 6 2.2244 -4.1983 -0.0015 20 6 2.5940 -3.3954 -1.2504 21 6 1.8279 -2.0705 -1.2501 22 1 0.7564 -2.2697 -1.2502 23 16 2.2662 -1.1186 -2.7308 24 6 1.7510 -2.2381 -4.0620 25 8 1.4529 0.0457 -2.7777 26 8 3.6796 -0.9801 -2.7781 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 0.7590 2.5299 -0.8908 31 1 0.7584 2.5303 0.8892 32 1 3.0056 3.5776 0.8905 33 1 3.0068 3.5775 -0.8894 34 1 4.1155 6.9745 -0.0012 35 1 2.0912 -1.5003 2.1386 36 1 0.7563 -2.2707 1.2483 37 1 3.6650 -3.1967 1.2484 38 1 2.3299 -3.9684 2.1376 39 1 1.1528 -4.3979 -0.0018 40 1 2.7701 -5.1418 -0.0019 41 1 2.3307 -3.9667 -2.1406 42 1 3.6656 -3.1958 -1.2501 43 1 0.6817 -2.4327 -3.9796 44 1 1.9627 -1.7772 -5.0268 45 1 2.2986 -3.1769 -3.9795 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361886847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:31 Heat of formation + Delta-G solvation = -148.441479 kcal Electronic energy + Delta-G solvation = -26481.890559 eV Core-core repulsion = 22818.144790 eV Total energy + Delta-G solvation = -3663.745769 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38228 -39.24275 -38.01572 -36.97758 -36.05071 -35.61643 -33.13011 -32.33314 -30.92315 -30.17796 -27.93438 -27.50284 -24.48800 -24.08151 -22.73026 -20.89817 -20.10800 -19.77012 -18.82747 -18.06192 -17.77286 -17.37792 -16.94797 -16.67509 -16.55205 -16.45888 -15.44172 -15.10444 -14.95456 -14.70477 -14.52030 -14.36050 -14.07924 -13.99177 -13.83219 -13.54470 -13.46285 -13.36636 -13.10704 -13.03804 -12.99488 -12.77772 -12.65961 -12.49433 -12.30339 -12.17441 -11.94296 -11.84881 -11.61473 -11.55872 -11.37911 -11.34303 -10.94633 -10.66812 -10.57701 -9.70953 -8.18648 -6.34122 -0.98571 1.39759 1.46370 1.53953 1.62048 1.82384 1.94186 2.42535 2.74269 3.01154 3.13329 3.35687 3.61176 3.73530 3.91942 4.03072 4.07511 4.10348 4.15665 4.27324 4.30336 4.39894 4.41523 4.45205 4.51041 4.67533 4.77887 4.83141 4.88808 4.91812 4.98450 5.08424 5.13507 5.15474 5.23310 5.32135 5.44589 5.50189 5.57373 5.60380 5.81940 6.15252 6.28755 6.83088 7.19392 7.35955 8.94512 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.003776 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.719357 B = 7413.809541 C = 8014.187371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.619 5.619 3 C 0.510 3.490 4 O -0.590 6.590 5 C -0.116 4.116 6 C 0.043 3.957 7 C -0.545 4.545 8 H 0.077 0.923 9 C -0.010 4.010 10 N -0.940 5.940 11 Si 0.981 3.019 12 H -0.258 1.258 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.145 3.855 16 H 0.068 0.932 17 C -0.109 4.109 18 C -0.123 4.123 19 C -0.104 4.104 20 C -0.114 4.114 21 C -0.558 4.558 22 H 0.187 0.813 23 S 2.365 3.635 24 C -0.630 4.630 25 O -0.974 6.974 26 O -0.998 6.998 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.098 0.902 31 H 0.107 0.893 32 H -0.018 1.018 33 H -0.028 1.028 34 H 0.263 0.737 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.063 0.937 43 H 0.168 0.832 44 H 0.131 0.869 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.880 -29.732 -3.169 32.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.353 5.353 3 C 0.300 3.700 4 O -0.470 6.470 5 C -0.155 4.155 6 C 0.006 3.994 7 C -0.582 4.582 8 H 0.095 0.905 9 C -0.207 4.207 10 N -0.580 5.580 11 Si 0.803 3.197 12 H -0.182 1.182 13 H -0.211 1.211 14 H -0.187 1.187 15 C 0.041 3.959 16 H 0.086 0.914 17 C -0.148 4.148 18 C -0.162 4.162 19 C -0.143 4.143 20 C -0.152 4.152 21 C -0.670 4.670 22 H 0.204 0.796 23 S 2.556 3.444 24 C -0.783 4.783 25 O -0.971 6.971 26 O -0.995 6.995 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.001 0.999 33 H -0.009 1.009 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.186 0.814 44 H 0.150 0.850 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.717 -28.722 -3.254 31.191 hybrid contribution 0.348 0.880 0.010 0.946 sum -11.369 -27.843 -3.245 30.249 Atomic orbital electron populations 1.22158 0.76531 1.05227 1.03580 1.48150 1.09018 1.04230 1.73852 1.21459 0.87646 0.87183 0.73678 1.90664 1.16722 1.88079 1.51514 1.21633 0.99357 0.90217 1.04290 1.18687 0.93681 0.92868 0.94206 1.21659 0.93996 0.91430 1.51158 0.90464 1.26237 0.95788 1.04237 0.94409 1.70207 1.08514 1.27950 1.51305 0.85282 0.77990 0.76780 0.79605 1.18240 1.21114 1.18701 1.20856 0.97073 0.82587 0.95405 0.91419 1.21779 1.02923 0.95934 0.94171 1.21604 0.99441 0.94906 1.00199 1.21498 1.03631 0.97849 0.91288 1.21673 0.99398 0.91081 1.03061 1.30439 1.13787 1.09412 1.13392 0.79603 1.09042 0.75108 0.79024 0.81237 1.30091 1.15361 1.16683 1.16170 1.93562 1.70537 1.46326 1.86721 1.93540 1.31987 1.86934 1.87012 0.90281 0.90730 0.87604 0.88393 0.87528 0.99930 1.00948 0.92804 0.92955 0.88010 0.93499 0.89358 0.88702 0.89373 0.86062 0.91783 0.81426 0.85038 0.82132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.34 8.99 127.77 1.15 2.49 16 2 N -0.62 -19.31 1.58 -822.60 -1.30 -20.61 16 3 C 0.51 23.32 7.16 87.66 0.63 23.94 16 4 O -0.59 -33.45 15.31 -3.04 -0.05 -33.50 16 5 C -0.12 -5.45 4.19 29.85 0.13 -5.33 16 6 C 0.04 2.69 4.26 29.85 0.13 2.82 16 7 C -0.54 -33.51 9.11 25.60 0.23 -33.28 16 8 H 0.08 4.30 7.74 -2.91 -0.02 4.28 16 9 C -0.01 -0.59 5.46 84.65 0.46 -0.13 16 10 N -0.94 -63.30 13.29 21.45 0.28 -63.02 16 11 Si 0.98 46.64 29.54 68.60 2.03 48.66 16 12 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 14 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 15 C 0.15 3.74 1.96 44.99 0.09 3.83 16 16 H 0.07 2.42 6.90 -2.39 -0.02 2.40 16 17 C -0.11 -1.91 5.20 30.59 0.16 -1.75 16 18 C -0.12 -1.59 5.92 30.60 0.18 -1.41 16 19 C -0.10 -0.73 5.92 30.60 0.18 -0.55 16 20 C -0.11 -1.17 4.95 30.61 0.15 -1.02 16 21 C -0.56 -8.97 1.94 30.61 0.06 -8.91 16 22 H 0.19 1.09 6.66 -2.39 -0.02 1.08 16 23 S 2.37 60.09 4.76 -56.49 -0.27 59.82 16 24 C -0.63 -6.11 10.17 113.37 1.15 -4.95 16 25 O -0.97 -33.37 16.27 -127.37 -2.07 -35.44 16 26 O -1.00 -37.77 17.91 -127.37 -2.28 -40.05 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.73 6.44 -2.39 -0.02 1.72 16 29 H 0.11 1.17 6.43 -2.39 -0.02 1.16 16 30 H 0.10 4.36 7.40 -2.39 -0.02 4.35 16 31 H 0.11 4.32 8.11 -2.39 -0.02 4.30 16 32 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 33 H -0.03 -2.00 8.10 -2.39 -0.02 -2.02 16 34 H 0.26 16.53 8.31 -92.71 -0.77 15.76 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.10 1.12 7.67 -2.39 -0.02 1.10 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.12 0.20 6.56 -2.39 -0.02 0.19 16 42 H 0.06 1.01 8.06 -2.39 -0.02 0.99 16 43 H 0.17 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.16 0.54 6.87 -2.39 -0.02 0.52 16 Total: -1.00 -104.02 363.69 2.01 -102.01 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 0.96 Total: 6.37 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.70 Total: -24.25 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -1.01 Total: -83.63 kcal Atomic # 8 Polarization: -104.59 SS G_CDS: -4.40 Total: -108.99 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Atomic # 16 Polarization: 60.09 SS G_CDS: -0.27 Total: 59.82 kcal Total: -104.02 2.01 -102.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361886847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.427 kcal (2) G-P(sol) polarization free energy of solvation -104.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds