Wall clock time and date at job start Tue Mar 31 2020 11:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 119.99707 * 2 1 4 4 O 1.21282 * 119.99922 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00037 * 359.97438 * 3 2 1 6 6 C 1.53006 * 109.46866 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00305 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99832 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46901 * 89.99815 * 11 9 7 13 13 H 1.48488 * 109.47487 * 210.00255 * 11 9 7 14 14 H 1.48503 * 109.47026 * 330.00635 * 11 9 7 15 15 C 1.46500 * 120.00123 * 179.97438 * 2 1 3 16 16 H 1.09002 * 109.46881 * 180.02562 * 15 2 1 17 17 C 1.52989 * 109.47068 * 60.00208 * 15 2 1 18 18 C 1.53002 * 109.47180 * 179.97438 * 17 15 2 19 19 C 1.53005 * 109.47049 * 59.99847 * 18 17 15 20 20 C 1.52995 * 109.46960 * 300.00004 * 19 18 17 21 21 C 1.52999 * 109.47122 * 299.99717 * 15 2 1 22 22 H 1.09002 * 109.47168 * 60.00264 * 21 15 2 23 23 S 1.81400 * 109.47426 * 300.00235 * 21 15 2 24 24 C 1.81399 * 101.92241 * 184.99747 * 23 21 15 25 25 O 1.42096 * 108.57553 * 299.48503 * 23 21 15 26 26 O 1.42101 * 108.57899 * 70.51084 * 23 21 15 27 27 H 1.09002 * 109.47085 * 90.00762 * 1 2 3 28 28 H 1.09002 * 109.46740 * 210.00435 * 1 2 3 29 29 H 1.09001 * 109.47266 * 330.00158 * 1 2 3 30 30 H 1.09000 * 109.47247 * 60.00371 * 5 3 2 31 31 H 1.09001 * 109.47358 * 299.99798 * 5 3 2 32 32 H 1.08993 * 109.46955 * 300.00219 * 6 5 3 33 33 H 1.09000 * 109.47050 * 60.00048 * 6 5 3 34 34 H 0.97002 * 120.00008 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47397 * 299.99840 * 17 15 2 36 36 H 1.09002 * 109.47680 * 60.00058 * 17 15 2 37 37 H 1.08995 * 109.47242 * 300.00237 * 18 17 15 38 38 H 1.08999 * 109.47574 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.46903 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.46946 * 60.00417 * 19 18 17 41 41 H 1.09002 * 109.47628 * 299.99995 * 20 19 18 42 42 H 1.09008 * 109.46969 * 179.97438 * 20 19 18 43 43 H 1.09004 * 109.46931 * 60.00058 * 24 23 21 44 44 H 1.08999 * 109.47667 * 179.97438 * 24 23 21 45 45 H 1.09000 * 109.47153 * 300.00294 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6260 4.9403 -0.0023 8 1 0.5460 4.9403 -0.0031 9 6 2.3153 6.1344 -0.0035 10 7 1.6577 7.2733 -0.0051 11 14 4.1833 6.1345 -0.0029 12 1 4.6787 6.1329 -1.4028 13 1 4.6781 7.3477 0.6959 14 1 4.6781 4.9228 0.6987 15 6 2.1975 -1.2687 0.0006 16 1 3.2692 -1.0695 0.0009 17 6 1.8280 -2.0715 -1.2483 18 6 2.5935 -3.3962 -1.2480 19 6 2.2244 -4.1983 0.0016 20 6 2.5940 -3.3954 1.2504 21 6 1.8280 -2.0704 1.2502 22 1 0.7563 -2.2697 1.2503 23 16 2.2662 -1.1185 2.7309 24 6 1.8931 -2.2974 4.0582 25 8 3.6669 -0.8801 2.7176 26 8 1.3757 -0.0166 2.8407 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 0.7583 2.5303 0.8892 31 1 0.7590 2.5299 -0.8908 32 1 3.0062 3.5779 0.8888 33 1 3.0062 3.5771 -0.8911 34 1 2.1426 8.1134 -0.0055 35 1 0.7563 -2.2707 -1.2482 36 1 2.0913 -1.5004 -2.1385 37 1 3.6650 -3.1967 -1.2483 38 1 2.3299 -3.9684 -2.1375 39 1 2.7695 -5.1422 0.0015 40 1 1.1529 -4.3979 0.0019 41 1 3.6656 -3.1958 1.2502 42 1 2.3307 -3.9667 2.1407 43 1 2.5010 -3.1930 3.9301 44 1 2.1171 -1.8416 5.0227 45 1 0.8375 -2.5661 4.0194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361886848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:34 Heat of formation + Delta-G solvation = -114.750343 kcal Electronic energy + Delta-G solvation = -26556.254898 eV Core-core repulsion = 22893.970086 eV Total energy + Delta-G solvation = -3662.284812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.22226 -38.21011 -37.00083 -35.99795 -34.95911 -33.42951 -31.73994 -31.41059 -30.02020 -29.58332 -26.78550 -26.00265 -23.51617 -22.94837 -20.89063 -20.18715 -18.89259 -18.69029 -17.28703 -17.08525 -16.55413 -16.30385 -15.89088 -15.63820 -15.26815 -14.64716 -14.42559 -14.20874 -13.99152 -13.76620 -13.59002 -13.44124 -13.13316 -12.82287 -12.74928 -12.49540 -12.27811 -12.24788 -12.04211 -11.98850 -11.94131 -11.65656 -11.53902 -11.26741 -11.09531 -11.04456 -10.86891 -10.75002 -10.21559 -10.00526 -9.93234 -9.68150 -9.15722 -9.05587 -8.59995 -8.41328 -5.94183 -3.91927 -0.18094 2.58650 3.03972 3.09727 3.45597 3.51745 3.53175 3.65649 3.78238 4.08457 4.20574 4.42894 4.51048 4.60219 4.61774 4.65689 4.81960 4.86384 4.88580 5.04328 5.17497 5.20700 5.29414 5.36361 5.40539 5.41708 5.56255 5.56619 5.62330 5.72861 5.75719 5.83197 5.89710 6.03889 6.18083 6.26744 6.59980 6.81306 7.47483 7.55888 7.57821 7.88815 8.55709 8.66116 9.09197 9.69514 11.18707 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.004093 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.754226 B = 6838.509317 C = 7337.720059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.634 5.634 3 C 0.513 3.487 4 O -0.530 6.530 5 C -0.120 4.120 6 C -0.001 4.001 7 C -0.521 4.521 8 H 0.073 0.927 9 C 0.069 3.931 10 N -0.905 5.905 11 Si 0.875 3.125 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.260 1.260 15 C 0.157 3.843 16 H 0.117 0.883 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.111 4.111 20 C -0.108 4.108 21 C -0.585 4.585 22 H 0.139 0.861 23 S 2.411 3.589 24 C -0.666 4.666 25 O -0.923 6.923 26 O -0.919 6.919 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.025 0.975 33 H 0.018 0.982 34 H 0.262 0.738 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.643 -29.500 2.883 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.370 5.370 3 C 0.304 3.696 4 O -0.405 6.405 5 C -0.159 4.159 6 C -0.039 4.039 7 C -0.559 4.559 8 H 0.091 0.909 9 C -0.132 4.132 10 N -0.545 5.545 11 Si 0.702 3.298 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.184 1.184 15 C 0.052 3.948 16 H 0.135 0.865 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.695 4.695 22 H 0.157 0.843 23 S 2.592 3.408 24 C -0.814 4.814 25 O -0.920 6.920 26 O -0.916 6.916 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.639 -28.392 2.986 28.671 hybrid contribution 0.324 -0.777 0.034 0.843 sum -2.316 -29.169 3.020 29.417 Atomic orbital electron populations 1.21776 0.79234 1.03643 1.01601 1.48253 1.07432 1.05087 1.76193 1.21738 0.88448 0.85727 0.73660 1.90684 1.14247 1.87168 1.48424 1.21707 1.00313 0.90465 1.03442 1.19407 0.94538 0.92243 0.97683 1.21111 0.94978 0.88823 1.50947 0.90890 1.24951 0.98402 0.95447 0.94402 1.69914 1.35746 0.97367 1.51423 0.86829 0.86387 0.77891 0.78712 1.20278 1.21452 1.18382 1.20646 0.99603 0.82920 0.91637 0.86522 1.21784 1.00827 0.95806 0.97137 1.21549 1.00920 0.95574 0.97848 1.21463 1.01700 0.98071 0.93670 1.21481 1.00785 0.92173 1.00230 1.30665 1.10807 1.09865 1.18140 0.84326 1.08388 0.76468 0.77555 0.78399 1.30422 1.11911 1.18756 1.20290 1.93626 1.29597 1.83325 1.85484 1.93628 1.66819 1.46065 1.85044 0.92611 0.91919 0.89464 0.88848 0.89636 0.95688 0.96334 0.92816 0.91243 0.90678 0.91291 0.91275 0.91163 0.91522 0.89517 0.90407 0.85445 0.85291 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 9.03 59.85 0.54 1.43 16 2 N -0.63 -9.30 1.66 -173.94 -0.29 -9.59 16 3 C 0.51 10.32 7.49 -10.99 -0.08 10.24 16 4 O -0.53 -12.61 15.31 5.56 0.09 -12.52 16 5 C -0.12 -2.56 4.19 -27.88 -0.12 -2.68 16 6 C 0.00 -0.02 3.33 -27.88 -0.09 -0.11 16 7 C -0.52 -15.56 9.66 -34.44 -0.33 -15.89 16 8 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.91 -28.86 13.96 55.43 0.77 -28.09 16 11 Si 0.87 23.55 27.47 -169.99 -4.67 18.89 16 12 H -0.28 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 14 H -0.26 -7.05 6.54 56.52 0.37 -6.68 16 15 C 0.16 1.90 1.95 -67.94 -0.13 1.77 16 16 H 0.12 1.74 6.90 -51.93 -0.36 1.38 16 17 C -0.12 -1.05 5.20 -26.74 -0.14 -1.19 16 18 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 19 C -0.11 -0.60 5.92 -26.73 -0.16 -0.76 16 20 C -0.11 -0.68 4.91 -26.71 -0.13 -0.81 16 21 C -0.59 -5.13 1.98 -26.70 -0.05 -5.19 16 22 H 0.14 0.79 6.66 -51.92 -0.35 0.45 16 23 S 2.41 29.16 4.69 -107.50 -0.50 28.66 16 24 C -0.67 -4.36 10.02 101.05 1.01 -3.35 16 25 O -0.92 -15.39 18.06 -57.83 -1.04 -16.44 16 26 O -0.92 -14.48 16.83 -57.83 -0.97 -15.45 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 29 H 0.09 1.06 6.44 -51.93 -0.33 0.73 16 30 H 0.09 1.93 7.40 -51.93 -0.38 1.55 16 31 H 0.09 1.65 8.11 -51.93 -0.42 1.22 16 32 H 0.02 0.70 7.16 -51.93 -0.37 0.33 16 33 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 34 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 35 H 0.07 0.52 7.67 -51.93 -0.40 0.12 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.26 6.39 -51.92 -0.33 -0.07 16 43 H 0.13 0.54 6.77 -51.92 -0.35 0.18 16 44 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 45 H 0.13 0.52 8.14 -51.92 -0.42 0.09 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -40.32 360.84 -8.54 -48.86 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -7.41 Total: -4.22 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 0.06 Total: -15.54 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.49 Total: -37.68 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.93 Total: -44.41 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.67 Total: 18.89 kcal Atomic # 16 Polarization: 29.16 SS G_CDS: -0.50 Total: 28.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -40.32 -8.54 -48.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361886848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.890 kcal (2) G-P(sol) polarization free energy of solvation -40.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds