Wall clock time and date at job start Tue Mar 31 2020 11:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 119.99707 * 2 1 4 4 O 1.21282 * 119.99922 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00037 * 359.97438 * 3 2 1 6 6 C 1.53006 * 109.46866 * 180.02562 * 5 3 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 3 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00305 * 179.97438 * 9 7 6 11 11 Si 1.86805 * 119.99832 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46901 * 89.99815 * 11 9 7 13 13 H 1.48488 * 109.47487 * 210.00255 * 11 9 7 14 14 H 1.48503 * 109.47026 * 330.00635 * 11 9 7 15 15 C 1.46500 * 120.00123 * 179.97438 * 2 1 3 16 16 H 1.09002 * 109.46881 * 180.02562 * 15 2 1 17 17 C 1.52989 * 109.47068 * 60.00208 * 15 2 1 18 18 C 1.53002 * 109.47180 * 179.97438 * 17 15 2 19 19 C 1.53005 * 109.47049 * 59.99847 * 18 17 15 20 20 C 1.52995 * 109.46960 * 300.00004 * 19 18 17 21 21 C 1.52999 * 109.47122 * 299.99717 * 15 2 1 22 22 H 1.09002 * 109.47168 * 60.00264 * 21 15 2 23 23 S 1.81400 * 109.47426 * 300.00235 * 21 15 2 24 24 C 1.81399 * 101.92241 * 184.99747 * 23 21 15 25 25 O 1.42096 * 108.57553 * 299.48503 * 23 21 15 26 26 O 1.42101 * 108.57899 * 70.51084 * 23 21 15 27 27 H 1.09002 * 109.47085 * 90.00762 * 1 2 3 28 28 H 1.09002 * 109.46740 * 210.00435 * 1 2 3 29 29 H 1.09001 * 109.47266 * 330.00158 * 1 2 3 30 30 H 1.09000 * 109.47247 * 60.00371 * 5 3 2 31 31 H 1.09001 * 109.47358 * 299.99798 * 5 3 2 32 32 H 1.08993 * 109.46955 * 300.00219 * 6 5 3 33 33 H 1.09000 * 109.47050 * 60.00048 * 6 5 3 34 34 H 0.97002 * 120.00008 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47397 * 299.99840 * 17 15 2 36 36 H 1.09002 * 109.47680 * 60.00058 * 17 15 2 37 37 H 1.08995 * 109.47242 * 300.00237 * 18 17 15 38 38 H 1.08999 * 109.47574 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.46903 * 179.97438 * 19 18 17 40 40 H 1.09002 * 109.46946 * 60.00417 * 19 18 17 41 41 H 1.09002 * 109.47628 * 299.99995 * 20 19 18 42 42 H 1.09008 * 109.46969 * 179.97438 * 20 19 18 43 43 H 1.09004 * 109.46931 * 60.00058 * 24 23 21 44 44 H 1.08999 * 109.47667 * 179.97438 * 24 23 21 45 45 H 1.09000 * 109.47153 * 300.00294 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3796 3.6353 -0.0011 7 6 1.6260 4.9403 -0.0023 8 1 0.5460 4.9403 -0.0031 9 6 2.3153 6.1344 -0.0035 10 7 1.6577 7.2733 -0.0051 11 14 4.1833 6.1345 -0.0029 12 1 4.6787 6.1329 -1.4028 13 1 4.6781 7.3477 0.6959 14 1 4.6781 4.9228 0.6987 15 6 2.1975 -1.2687 0.0006 16 1 3.2692 -1.0695 0.0009 17 6 1.8280 -2.0715 -1.2483 18 6 2.5935 -3.3962 -1.2480 19 6 2.2244 -4.1983 0.0016 20 6 2.5940 -3.3954 1.2504 21 6 1.8280 -2.0704 1.2502 22 1 0.7563 -2.2697 1.2503 23 16 2.2662 -1.1185 2.7309 24 6 1.8931 -2.2974 4.0582 25 8 3.6669 -0.8801 2.7176 26 8 1.3757 -0.0166 2.8407 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 0.7583 2.5303 0.8892 31 1 0.7590 2.5299 -0.8908 32 1 3.0062 3.5779 0.8888 33 1 3.0062 3.5771 -0.8911 34 1 2.1426 8.1134 -0.0055 35 1 0.7563 -2.2707 -1.2482 36 1 2.0913 -1.5004 -2.1385 37 1 3.6650 -3.1967 -1.2483 38 1 2.3299 -3.9684 -2.1375 39 1 2.7695 -5.1422 0.0015 40 1 1.1529 -4.3979 0.0019 41 1 3.6656 -3.1958 1.2502 42 1 2.3307 -3.9667 2.1407 43 1 2.5010 -3.1930 3.9301 44 1 2.1171 -1.8416 5.0227 45 1 0.8375 -2.5661 4.0194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361886848.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:33 Heat of formation + Delta-G solvation = -145.723683 kcal Electronic energy + Delta-G solvation = -26557.598002 eV Core-core repulsion = 22893.970086 eV Total energy + Delta-G solvation = -3663.627916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42133 -39.26910 -38.02158 -36.99727 -36.08825 -35.61864 -33.41904 -32.36140 -31.05479 -30.15868 -28.12814 -27.62329 -24.30701 -24.02420 -22.54659 -20.90781 -20.19123 -19.77518 -19.14867 -18.08177 -17.92570 -17.40949 -17.01064 -16.69652 -16.58273 -16.26220 -15.46083 -15.15273 -15.00375 -14.81015 -14.72941 -14.48657 -14.20851 -14.02047 -13.90234 -13.54826 -13.52625 -13.44494 -13.17286 -13.07527 -13.00867 -12.93384 -12.65661 -12.31241 -12.20159 -12.07421 -11.99995 -11.85637 -11.82737 -11.56427 -11.44330 -11.36722 -10.95615 -10.80977 -10.71535 -9.75069 -8.34848 -6.37166 -0.99451 1.27819 1.29849 1.47177 1.55634 1.80864 1.89895 2.32095 2.72138 3.00075 3.00778 3.34246 3.60094 3.69620 3.87710 4.02218 4.06989 4.09604 4.15088 4.26053 4.29256 4.31905 4.37877 4.42441 4.43977 4.66524 4.75703 4.81169 4.87819 4.91169 4.94661 5.03484 5.13189 5.14988 5.23439 5.27731 5.32151 5.38090 5.49883 5.55491 5.56438 6.18890 6.25396 6.67194 7.12145 7.27827 8.80846 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.004093 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.754226 B = 6838.509317 C = 7337.720059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.621 5.621 3 C 0.509 3.491 4 O -0.583 6.583 5 C -0.114 4.114 6 C 0.005 3.995 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.019 3.981 10 N -0.939 5.939 11 Si 0.933 3.067 12 H -0.263 1.263 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.145 3.855 16 H 0.075 0.925 17 C -0.109 4.109 18 C -0.123 4.123 19 C -0.106 4.106 20 C -0.114 4.114 21 C -0.560 4.560 22 H 0.184 0.816 23 S 2.366 3.634 24 C -0.633 4.633 25 O -0.994 6.994 26 O -0.975 6.975 27 H 0.079 0.921 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.000 1.000 33 H 0.010 0.990 34 H 0.269 0.731 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.160 0.840 44 H 0.131 0.869 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -33.940 3.103 34.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.354 5.354 3 C 0.299 3.701 4 O -0.462 6.462 5 C -0.154 4.154 6 C -0.033 4.033 7 C -0.566 4.566 8 H 0.071 0.929 9 C -0.179 4.179 10 N -0.580 5.580 11 Si 0.757 3.243 12 H -0.188 1.188 13 H -0.197 1.197 14 H -0.197 1.197 15 C 0.041 3.959 16 H 0.093 0.907 17 C -0.149 4.149 18 C -0.161 4.161 19 C -0.144 4.144 20 C -0.152 4.152 21 C -0.672 4.672 22 H 0.201 0.799 23 S 2.557 3.443 24 C -0.786 4.786 25 O -0.991 6.991 26 O -0.972 6.972 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.018 0.982 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.139 0.861 43 H 0.179 0.821 44 H 0.150 0.850 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.449 -32.813 3.190 33.267 hybrid contribution 0.767 0.481 -0.009 0.905 sum -3.682 -32.332 3.181 32.696 Atomic orbital electron populations 1.22159 0.76642 1.05166 1.03616 1.48177 1.09002 1.04464 1.73767 1.21378 0.87697 0.87027 0.73970 1.90657 1.16186 1.88050 1.51347 1.21519 0.99260 0.89972 1.04645 1.19234 0.95011 0.93142 0.95938 1.21369 0.94388 0.90354 1.50494 0.92857 1.25722 1.02817 0.95221 0.94175 1.70005 1.37570 0.98052 1.52354 0.85919 0.81180 0.77794 0.79398 1.18784 1.19688 1.19674 1.20891 0.97344 0.82387 0.95259 0.90678 1.21779 1.02810 0.96006 0.94275 1.21599 0.99565 0.94850 1.00081 1.21498 1.03530 0.97929 0.91423 1.21701 0.99497 0.91012 1.03034 1.30458 1.13711 1.09543 1.13473 0.79918 1.09021 0.74865 0.79295 0.81164 1.30117 1.15086 1.17086 1.16274 1.93548 1.33014 1.85511 1.87042 1.93562 1.66861 1.50340 1.86429 0.90207 0.87690 0.90898 0.88550 0.87502 0.98208 0.97180 0.92225 0.88327 0.92734 0.93198 0.89502 0.89344 0.88975 0.91413 0.86064 0.82148 0.85007 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.30 9.03 127.77 1.15 2.45 16 2 N -0.62 -18.17 1.66 -822.60 -1.36 -19.53 16 3 C 0.51 21.52 7.49 87.66 0.66 22.17 16 4 O -0.58 -29.90 15.31 -3.04 -0.05 -29.95 16 5 C -0.11 -5.11 4.19 29.85 0.13 -4.98 16 6 C 0.00 0.26 3.33 29.85 0.10 0.36 16 7 C -0.53 -32.78 9.66 25.60 0.25 -32.53 16 8 H 0.05 3.43 7.99 -2.91 -0.02 3.41 16 9 C 0.02 1.17 5.47 84.65 0.46 1.64 16 10 N -0.94 -61.04 13.96 21.45 0.30 -60.74 16 11 Si 0.93 49.98 27.47 68.60 1.88 51.86 16 12 H -0.26 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.27 -13.75 7.11 99.48 0.71 -13.04 16 14 H -0.27 -15.03 6.54 99.48 0.65 -14.38 16 15 C 0.15 3.44 1.95 44.99 0.09 3.53 16 16 H 0.08 2.44 6.90 -2.39 -0.02 2.42 16 17 C -0.11 -1.74 5.20 30.59 0.16 -1.58 16 18 C -0.12 -1.39 5.92 30.60 0.18 -1.21 16 19 C -0.11 -0.61 5.92 30.59 0.18 -0.42 16 20 C -0.11 -0.98 4.91 30.61 0.15 -0.83 16 21 C -0.56 -8.20 1.98 30.61 0.06 -8.14 16 22 H 0.18 1.00 6.66 -2.39 -0.02 0.98 16 23 S 2.37 56.30 4.69 -56.49 -0.27 56.04 16 24 C -0.63 -5.59 10.02 113.37 1.14 -4.46 16 25 O -0.99 -35.65 18.06 -127.37 -2.30 -37.95 16 26 O -0.97 -31.52 16.83 -127.37 -2.14 -33.67 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 1.18 6.43 -2.39 -0.02 1.16 16 29 H 0.07 1.70 6.44 -2.39 -0.02 1.69 16 30 H 0.10 4.19 7.40 -2.39 -0.02 4.17 16 31 H 0.11 4.20 8.11 -2.39 -0.02 4.18 16 32 H 0.00 -0.03 7.16 -2.39 -0.02 -0.05 16 33 H 0.01 0.56 7.53 -2.39 -0.02 0.54 16 34 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 35 H 0.10 1.00 7.67 -2.39 -0.02 0.98 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.09 0.15 8.14 -2.39 -0.02 0.14 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.12 0.03 6.39 -2.38 -0.02 0.01 16 43 H 0.16 0.42 6.77 -2.39 -0.02 0.41 16 44 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.17 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -97.88 360.84 1.68 -96.20 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 0.91 Total: 1.73 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 4.70 Total: -24.00 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -1.06 Total: -80.27 kcal Atomic # 8 Polarization: -97.07 SS G_CDS: -4.49 Total: -101.56 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.88 Total: 51.86 kcal Atomic # 16 Polarization: 56.30 SS G_CDS: -0.27 Total: 56.04 kcal Total: -97.88 1.68 -96.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361886848.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.521 kcal (2) G-P(sol) polarization free energy of solvation -97.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds