Wall clock time and date at job start Tue Mar 31 2020 11:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 116.99938 * 2 1 4 4 O 1.20824 * 119.99456 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00091 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46892 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99606 * 262.84844 * 6 5 3 8 8 H 1.07999 * 119.99602 * 142.29706 * 7 6 5 9 9 C 1.38812 * 120.00227 * 322.29901 * 7 6 5 10 10 N 1.31613 * 119.99714 * 156.55546 * 9 7 6 11 11 Si 1.86791 * 119.99752 * 336.55321 * 9 7 6 12 12 H 1.48505 * 109.47111 * 95.21600 * 11 9 7 13 13 H 1.48507 * 109.47047 * 215.21154 * 11 9 7 14 14 H 1.48494 * 109.47712 * 335.21256 * 11 9 7 15 15 C 1.46498 * 120.00193 * 82.85313 * 6 5 3 16 16 C 1.53000 * 109.47061 * 89.99968 * 15 6 5 17 17 C 1.50704 * 109.47170 * 179.97438 * 16 15 6 18 18 N 1.30106 * 124.95281 * 269.97928 * 17 16 15 19 19 C 1.35787 * 109.64362 * 180.02562 * 18 17 16 20 20 C 1.39742 * 133.59467 * 180.02562 * 19 18 17 21 21 C 1.36603 * 119.88293 * 179.97438 * 20 19 18 22 22 C 1.38784 * 120.66811 * 359.97438 * 21 20 19 23 23 C 1.37846 * 120.45069 * 359.97438 * 22 21 20 24 24 C 1.38835 * 119.69462 * 0.02562 * 23 22 21 25 25 N 1.36034 * 124.94768 * 89.99556 * 17 16 15 26 26 C 1.46496 * 126.35243 * 0.02562 * 25 17 16 27 27 H 1.09000 * 109.46817 * 299.99559 * 1 2 3 28 28 H 1.08991 * 109.47540 * 60.00109 * 1 2 3 29 29 H 1.09006 * 109.46640 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47255 * 59.99767 * 5 3 2 31 31 H 1.08999 * 109.47081 * 299.99894 * 5 3 2 32 32 H 0.97001 * 119.99923 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.47285 * 329.99473 * 15 6 5 34 34 H 1.09002 * 109.47241 * 209.99535 * 15 6 5 35 35 H 1.09003 * 109.47355 * 60.00054 * 16 15 6 36 36 H 1.08993 * 109.47171 * 299.99483 * 16 15 6 37 37 H 1.08005 * 120.05846 * 359.97011 * 20 19 18 38 38 H 1.07997 * 119.66440 * 179.72101 * 21 20 19 39 39 H 1.07997 * 119.77458 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.15453 * 179.97438 * 23 22 21 41 41 H 1.09007 * 109.47164 * 269.97838 * 26 25 17 42 42 H 1.09004 * 109.47391 * 29.97380 * 26 25 17 43 43 H 1.08996 * 109.48024 * 149.98093 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.3168 3.2953 -1.1764 8 1 4.0422 4.3264 -1.3437 9 6 5.0093 2.5940 -2.1539 10 7 4.9388 2.9752 -3.4116 11 14 6.0410 1.1095 -1.6840 12 1 5.2416 -0.1280 -1.8705 13 1 7.2488 1.0532 -2.5464 14 1 6.4531 1.2230 -0.2619 15 6 4.0384 3.4263 1.2594 16 6 5.4308 3.2803 1.8764 17 6 5.4895 4.0486 3.1716 18 7 5.8442 5.2954 3.2832 19 6 5.7862 5.6716 4.5866 20 6 6.0531 6.8683 5.2569 21 6 5.8974 6.9386 6.6122 22 6 5.4751 5.8314 7.3347 23 6 5.2051 4.6409 6.6943 24 6 5.3577 4.5506 5.3173 25 7 5.1796 3.5395 4.3944 26 6 4.7384 2.1719 4.6792 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7807 0.8891 32 1 5.4230 2.4853 -4.0947 33 1 3.2921 3.0323 1.9493 34 1 3.8350 4.4797 1.0669 35 1 6.1771 3.6743 1.1866 36 1 5.6343 2.2269 2.0690 37 1 6.3819 7.7362 4.7044 38 1 6.1089 7.8640 7.1273 39 1 5.3573 5.9030 8.4058 40 1 4.8772 3.7822 7.2613 41 1 3.6509 2.1217 4.6227 42 1 5.1720 1.4903 3.9473 43 1 5.0637 1.8859 5.6794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362233224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:27 Heat of formation + Delta-G solvation = 19.122883 kcal Electronic energy + Delta-G solvation = -26450.060113 eV Core-core repulsion = 22690.429280 eV Total energy + Delta-G solvation = -3759.630833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06168 -39.72253 -37.53867 -36.56297 -35.36880 -34.15310 -32.49822 -31.27216 -30.43593 -28.86836 -27.88851 -26.94435 -26.31268 -24.70597 -22.09576 -22.07458 -21.31113 -20.27354 -19.67746 -17.45836 -17.21548 -16.98337 -16.92096 -16.19347 -15.82275 -15.57233 -15.35254 -15.01776 -14.37908 -14.19033 -14.05726 -13.51628 -13.40048 -13.27264 -13.11242 -12.85286 -12.68134 -12.37865 -12.16856 -12.13454 -11.94628 -11.68316 -11.43870 -11.30140 -11.22343 -10.79435 -10.43489 -10.30950 -10.30011 -10.26619 -9.82687 -9.74100 -9.72141 -8.72094 -8.24316 -8.01677 -7.17742 -6.17098 -3.61729 1.00872 1.55230 2.65849 2.89352 2.94931 3.14472 3.27318 3.34235 3.36757 3.94200 4.26284 4.33824 4.49126 4.63266 4.81488 4.97341 5.00758 5.04053 5.17861 5.27797 5.36931 5.38374 5.42416 5.45284 5.47894 5.53579 5.66360 5.72095 5.76080 5.79143 5.91225 5.99843 6.08552 6.12979 6.41799 6.49868 6.55736 6.60453 6.71235 6.94068 6.96827 7.24288 7.77488 8.11158 8.21271 8.47442 8.76610 9.47750 9.80590 10.97382 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003847 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.979706 B = 7276.935003 C = 8376.592984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.426 3.574 4 O -0.495 6.495 5 C 0.139 3.861 6 N -0.567 5.567 7 C -0.276 4.276 8 H 0.086 0.914 9 C 0.042 3.958 10 N -0.882 5.882 11 Si 0.862 3.138 12 H -0.281 1.281 13 H -0.293 1.293 14 H -0.261 1.261 15 C 0.164 3.836 16 C -0.070 4.070 17 C 0.307 3.693 18 N -0.493 5.493 19 C 0.051 3.949 20 C -0.066 4.066 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.109 4.109 24 C 0.039 3.961 25 N -0.495 5.495 26 C 0.078 3.922 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.267 0.733 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.858 -3.888 19.036 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.294 6.294 3 C 0.265 3.735 4 O -0.379 6.379 5 C 0.010 3.990 6 N -0.286 5.286 7 C -0.404 4.404 8 H 0.104 0.896 9 C -0.160 4.160 10 N -0.521 5.521 11 Si 0.690 3.310 12 H -0.208 1.208 13 H -0.220 1.220 14 H -0.186 1.186 15 C 0.037 3.963 16 C -0.112 4.112 17 C 0.042 3.958 18 N -0.212 5.212 19 C -0.068 4.068 20 C -0.086 4.086 21 C -0.154 4.154 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.070 4.070 25 N -0.185 5.185 26 C -0.064 4.064 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.135 0.865 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.826 -3.155 18.193 18.483 hybrid contribution 0.002 -1.457 0.710 1.621 sum -0.824 -4.612 18.904 19.475 Atomic orbital electron populations 1.23073 0.78573 1.02446 1.01929 1.86617 1.22057 1.35764 1.84944 1.26527 0.94226 0.80855 0.71942 1.90582 1.66778 1.36421 1.44160 1.21344 0.85198 0.89378 1.03101 1.43863 1.72771 1.07812 1.04167 1.18839 1.31524 0.99029 0.91026 0.89611 1.25511 0.97479 0.97933 0.95122 1.69887 1.41222 1.41387 0.99619 0.87151 0.81426 0.82966 0.79479 1.20832 1.21981 1.18558 1.20851 0.91017 0.98007 0.86434 1.21153 1.04158 0.97533 0.88345 1.24026 0.94463 0.90113 0.87223 1.70548 1.23256 1.10242 1.17196 1.19176 1.03585 0.94214 0.89803 1.20027 0.99487 0.95333 0.93710 1.20578 1.02423 0.98848 0.93523 1.20787 1.00673 0.92292 0.99477 1.19883 1.04366 0.98821 0.89961 1.18900 1.05970 0.89834 0.92292 1.45265 1.55948 1.10694 1.06612 1.21963 1.01166 0.80113 1.03168 0.92768 0.92407 0.89152 0.88087 0.90262 0.92256 0.94084 0.91220 0.87240 0.90655 0.85487 0.85691 0.85699 0.86483 0.90689 0.89188 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 101.05 1.07 1.54 16 2 O -0.38 -6.60 10.57 -39.27 -0.41 -7.02 16 3 C 0.43 8.69 8.01 36.01 0.29 8.98 16 4 O -0.49 -11.55 16.10 -18.75 -0.30 -11.85 16 5 C 0.14 2.80 4.86 -5.19 -0.03 2.77 16 6 N -0.57 -12.69 1.59 -174.61 -0.28 -12.97 16 7 C -0.28 -7.38 9.90 -15.06 -0.15 -7.53 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.04 1.14 5.23 -17.43 -0.09 1.05 16 10 N -0.88 -25.82 13.97 55.49 0.78 -25.04 16 11 Si 0.86 19.73 25.15 -169.99 -4.28 15.46 16 12 H -0.28 -6.17 6.67 56.52 0.38 -5.80 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 14 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 15 C 0.16 3.17 5.57 -4.04 -0.02 3.15 16 16 C -0.07 -1.20 5.83 -27.88 -0.16 -1.37 16 17 C 0.31 5.19 7.11 -154.83 -1.10 4.09 16 18 N -0.49 -9.27 11.27 -8.23 -0.09 -9.36 16 19 C 0.05 0.85 7.23 -84.70 -0.61 0.24 16 20 C -0.07 -0.91 10.05 -39.61 -0.40 -1.31 16 21 C -0.13 -1.46 9.96 -39.97 -0.40 -1.86 16 22 C -0.11 -1.16 10.03 -39.52 -0.40 -1.56 16 23 C -0.11 -1.27 10.05 -39.50 -0.40 -1.67 16 24 C 0.04 0.57 6.88 -83.99 -0.58 0.00 16 25 N -0.50 -7.06 3.21 -118.50 -0.38 -7.44 16 26 C 0.08 0.76 10.96 59.84 0.66 1.42 16 27 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 2.19 3.76 -51.93 -0.20 1.99 16 31 H 0.08 1.27 8.12 -51.93 -0.42 0.85 16 32 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.07 1.48 8.04 -51.93 -0.42 1.07 16 35 H 0.11 2.09 8.14 -51.93 -0.42 1.66 16 36 H 0.08 1.13 7.01 -51.93 -0.36 0.76 16 37 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 42 H 0.09 0.79 7.00 -51.93 -0.36 0.43 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 364.38 15.07 5.49 5.49 Total: -1.00 -33.72 364.38 -7.79 -41.51 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.99 Total: 3.28 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: -2.32 Total: 7.95 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.03 Total: -54.82 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.72 Total: -18.87 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.28 Total: 15.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.72 -7.79 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362233224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.634 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds