Wall clock time and date at job start Tue Mar 31 2020 11:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34236 * 116.99938 * 2 1 4 4 O 1.20824 * 119.99456 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00091 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46892 * 180.02562 * 5 3 2 7 7 C 1.36943 * 119.99606 * 262.84844 * 6 5 3 8 8 H 1.07999 * 119.99602 * 142.29706 * 7 6 5 9 9 C 1.38812 * 120.00227 * 322.29901 * 7 6 5 10 10 N 1.31613 * 119.99714 * 156.55546 * 9 7 6 11 11 Si 1.86791 * 119.99752 * 336.55321 * 9 7 6 12 12 H 1.48505 * 109.47111 * 95.21600 * 11 9 7 13 13 H 1.48507 * 109.47047 * 215.21154 * 11 9 7 14 14 H 1.48494 * 109.47712 * 335.21256 * 11 9 7 15 15 C 1.46498 * 120.00193 * 82.85313 * 6 5 3 16 16 C 1.53000 * 109.47061 * 89.99968 * 15 6 5 17 17 C 1.50704 * 109.47170 * 179.97438 * 16 15 6 18 18 N 1.30106 * 124.95281 * 269.97928 * 17 16 15 19 19 C 1.35787 * 109.64362 * 180.02562 * 18 17 16 20 20 C 1.39742 * 133.59467 * 180.02562 * 19 18 17 21 21 C 1.36603 * 119.88293 * 179.97438 * 20 19 18 22 22 C 1.38784 * 120.66811 * 359.97438 * 21 20 19 23 23 C 1.37846 * 120.45069 * 359.97438 * 22 21 20 24 24 C 1.38835 * 119.69462 * 0.02562 * 23 22 21 25 25 N 1.36034 * 124.94768 * 89.99556 * 17 16 15 26 26 C 1.46496 * 126.35243 * 0.02562 * 25 17 16 27 27 H 1.09000 * 109.46817 * 299.99559 * 1 2 3 28 28 H 1.08991 * 109.47540 * 60.00109 * 1 2 3 29 29 H 1.09006 * 109.46640 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47255 * 59.99767 * 5 3 2 31 31 H 1.08999 * 109.47081 * 299.99894 * 5 3 2 32 32 H 0.97001 * 119.99923 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.47285 * 329.99473 * 15 6 5 34 34 H 1.09002 * 109.47241 * 209.99535 * 15 6 5 35 35 H 1.09003 * 109.47355 * 60.00054 * 16 15 6 36 36 H 1.08993 * 109.47171 * 299.99483 * 16 15 6 37 37 H 1.08005 * 120.05846 * 359.97011 * 20 19 18 38 38 H 1.07997 * 119.66440 * 179.72101 * 21 20 19 39 39 H 1.07997 * 119.77458 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.15453 * 179.97438 * 23 22 21 41 41 H 1.09007 * 109.47164 * 269.97838 * 26 25 17 42 42 H 1.09004 * 109.47391 * 29.97380 * 26 25 17 43 43 H 1.08996 * 109.48024 * 149.98093 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9816 2.6799 0.0002 7 6 4.3168 3.2953 -1.1764 8 1 4.0422 4.3264 -1.3437 9 6 5.0093 2.5940 -2.1539 10 7 4.9388 2.9752 -3.4116 11 14 6.0410 1.1095 -1.6840 12 1 5.2416 -0.1280 -1.8705 13 1 7.2488 1.0532 -2.5464 14 1 6.4531 1.2230 -0.2619 15 6 4.0384 3.4263 1.2594 16 6 5.4308 3.2803 1.8764 17 6 5.4895 4.0486 3.1716 18 7 5.8442 5.2954 3.2832 19 6 5.7862 5.6716 4.5866 20 6 6.0531 6.8683 5.2569 21 6 5.8974 6.9386 6.6122 22 6 5.4751 5.8314 7.3347 23 6 5.2051 4.6409 6.6943 24 6 5.3577 4.5506 5.3173 25 7 5.1796 3.5395 4.3944 26 6 4.7384 2.1719 4.6792 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 3.9557 0.7810 -0.8908 31 1 3.9564 0.7807 0.8891 32 1 5.4230 2.4853 -4.0947 33 1 3.2921 3.0323 1.9493 34 1 3.8350 4.4797 1.0669 35 1 6.1771 3.6743 1.1866 36 1 5.6343 2.2269 2.0690 37 1 6.3819 7.7362 4.7044 38 1 6.1089 7.8640 7.1273 39 1 5.3573 5.9030 8.4058 40 1 4.8772 3.7822 7.2613 41 1 3.6509 2.1217 4.6227 42 1 5.1720 1.4903 3.9473 43 1 5.0637 1.8859 5.6794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362233224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:26 Heat of formation + Delta-G solvation = -1.639806 kcal Electronic energy + Delta-G solvation = -26450.960450 eV Core-core repulsion = 22690.429280 eV Total energy + Delta-G solvation = -3760.531171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.12718 -41.28464 -38.64186 -38.02895 -36.98576 -35.17325 -34.28653 -32.88989 -31.35357 -30.21091 -29.20436 -27.80293 -27.74809 -26.31961 -23.47263 -23.06915 -22.62686 -21.80267 -20.88420 -19.19697 -18.61561 -18.26867 -17.90765 -17.71439 -17.20258 -16.83514 -16.75389 -16.43104 -15.77072 -15.37123 -14.94633 -14.94087 -14.87689 -14.47842 -14.27396 -14.17716 -13.95700 -13.83852 -13.64144 -13.39301 -12.96375 -12.85261 -12.81435 -12.63974 -12.34740 -12.33418 -12.13500 -11.84274 -11.72151 -11.69342 -11.41813 -11.30680 -10.87096 -10.69437 -9.29875 -9.07672 -8.94409 -8.24932 -5.70849 0.01435 0.60482 1.33301 1.34216 1.48808 1.59746 1.66782 1.77236 1.90568 2.39907 2.90670 2.95476 3.07735 3.36276 3.62227 3.88388 4.01743 4.12096 4.15166 4.19190 4.25921 4.30958 4.35404 4.35795 4.37297 4.46027 4.50920 4.52537 4.55668 4.65729 4.70352 4.75151 4.86449 5.01908 5.16920 5.26002 5.47476 5.51727 5.60507 5.64625 5.82983 6.02672 6.13134 6.21248 6.72066 6.97664 6.99112 7.45628 7.82295 8.94502 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003847 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.979706 B = 7276.935003 C = 8376.592984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.430 3.570 4 O -0.535 6.535 5 C 0.133 3.867 6 N -0.578 5.578 7 C -0.275 4.275 8 H 0.027 0.973 9 C -0.015 4.015 10 N -0.942 5.942 11 Si 0.934 3.066 12 H -0.257 1.257 13 H -0.305 1.305 14 H -0.226 1.226 15 C 0.174 3.826 16 C -0.053 4.053 17 C 0.288 3.712 18 N -0.541 5.541 19 C 0.005 3.995 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.102 4.102 23 C -0.111 4.111 24 C 0.027 3.973 25 N -0.489 5.489 26 C 0.067 3.933 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.135 0.865 30 H 0.091 0.909 31 H 0.135 0.865 32 H 0.268 0.732 33 H 0.060 0.940 34 H 0.030 0.970 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.150 0.850 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.849 -7.188 23.516 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.271 3.729 4 O -0.423 6.423 5 C 0.005 3.995 6 N -0.298 5.298 7 C -0.404 4.404 8 H 0.044 0.956 9 C -0.213 4.213 10 N -0.583 5.583 11 Si 0.758 3.242 12 H -0.183 1.183 13 H -0.233 1.233 14 H -0.149 1.149 15 C 0.047 3.953 16 C -0.094 4.094 17 C 0.022 3.978 18 N -0.262 5.262 19 C -0.113 4.113 20 C -0.112 4.112 21 C -0.143 4.143 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.082 4.082 25 N -0.178 5.178 26 C -0.074 4.074 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.153 0.847 30 H 0.109 0.891 31 H 0.152 0.848 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.141 0.859 38 H 0.175 0.825 39 H 0.184 0.816 40 H 0.167 0.833 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.845 -6.506 22.735 23.662 hybrid contribution -0.173 -0.316 -0.554 0.661 sum -1.018 -6.821 22.181 23.228 Atomic orbital electron populations 1.23440 0.76135 1.05320 1.01728 1.86562 1.24261 1.33686 1.84162 1.26378 0.94508 0.81029 0.70991 1.90584 1.67667 1.37907 1.46165 1.21505 0.85166 0.87749 1.05061 1.43796 1.73633 1.08872 1.03468 1.18505 1.31711 0.97232 0.92967 0.95560 1.26249 0.98354 1.02288 0.94387 1.70045 1.42899 1.44253 1.01147 0.86006 0.78519 0.79035 0.80660 1.18322 1.23317 1.14876 1.20687 0.93202 0.95635 0.85746 1.20804 1.01277 0.99272 0.88064 1.23705 0.96040 0.89971 0.88083 1.70406 1.24623 1.11808 1.19371 1.19639 1.05872 0.96281 0.89492 1.20285 1.00965 0.94774 0.95225 1.21009 1.00424 1.00577 0.92301 1.21339 0.98177 0.91204 1.01394 1.20341 1.03658 1.00544 0.88644 1.19285 1.06145 0.89271 0.93478 1.45397 1.54968 1.12087 1.05398 1.22360 1.01896 0.77893 1.05235 0.92083 0.93648 0.84704 0.89143 0.84796 0.92326 0.92123 0.95111 0.90025 0.87428 0.85855 0.82510 0.81609 0.83281 0.89791 0.87879 0.87330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.56 113.37 1.20 1.88 16 2 O -0.37 -11.94 10.57 -51.47 -0.54 -12.48 16 3 C 0.43 16.93 8.01 71.24 0.57 17.50 16 4 O -0.53 -25.15 16.10 21.97 0.35 -24.80 16 5 C 0.13 5.06 4.86 85.63 0.42 5.48 16 6 N -0.58 -26.15 1.59 -706.35 -1.12 -27.27 16 7 C -0.27 -15.57 9.90 84.03 0.83 -14.74 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 9 C -0.02 -0.85 5.23 84.86 0.44 -0.41 16 10 N -0.94 -58.11 13.97 21.65 0.30 -57.81 16 11 Si 0.93 40.51 25.15 68.60 1.73 42.24 16 12 H -0.26 -10.16 6.67 99.48 0.66 -9.50 16 13 H -0.31 -13.82 7.11 99.48 0.71 -13.12 16 14 H -0.23 -8.48 7.11 99.48 0.71 -7.77 16 15 C 0.17 6.89 5.57 86.38 0.48 7.37 16 16 C -0.05 -1.81 5.83 29.85 0.17 -1.63 16 17 C 0.29 9.85 7.11 137.92 0.98 10.83 16 18 N -0.54 -21.46 11.27 -179.96 -2.03 -23.49 16 19 C 0.01 0.18 7.23 39.45 0.29 0.47 16 20 C -0.09 -2.57 10.05 22.25 0.22 -2.35 16 21 C -0.12 -2.38 9.96 22.02 0.22 -2.16 16 22 C -0.10 -1.68 10.03 22.31 0.22 -1.45 16 23 C -0.11 -2.19 10.05 22.32 0.22 -1.96 16 24 C 0.03 0.77 6.88 38.86 0.27 1.03 16 25 N -0.49 -13.15 3.21 -528.83 -1.70 -14.84 16 26 C 0.07 1.05 10.96 127.77 1.40 2.45 16 27 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 28 H 0.04 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.13 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.09 3.68 3.76 -2.39 -0.01 3.67 16 31 H 0.13 3.61 8.12 -2.39 -0.02 3.60 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 34 H 0.03 1.42 8.04 -2.39 -0.02 1.40 16 35 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.11 2.89 7.01 -2.39 -0.02 2.87 16 37 H 0.12 3.28 8.06 -2.91 -0.02 3.25 16 38 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.10 1.35 7.00 -2.38 -0.02 1.33 16 43 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -82.29 364.38 5.90 -76.39 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.97 Total: 19.76 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 7.94 Total: 22.31 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -4.54 Total: -123.41 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.19 Total: -37.28 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.73 Total: 42.24 kcal Total: -82.29 5.90 -76.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362233224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.749 kcal (2) G-P(sol) polarization free energy of solvation -82.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds