Wall clock time and date at job start Tue Mar 31 2020 11:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34229 * 117.00026 * 2 1 4 4 O 1.20826 * 119.99932 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00125 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46170 * 30.86313 * 5 3 2 7 7 C 1.53045 * 109.45998 * 270.88625 * 5 3 2 8 8 C 1.53116 * 109.27636 * 180.81375 * 7 5 3 9 9 H 1.09000 * 109.52542 * 177.55866 * 8 7 5 10 10 O 1.42897 * 109.52617 * 297.75117 * 8 7 5 11 11 C 1.42895 * 114.00023 * 209.68263 * 10 8 7 12 12 C 1.53126 * 109.15807 * 57.65703 * 8 7 5 13 13 C 1.53032 * 109.27751 * 302.33932 * 12 8 7 14 14 N 1.46848 * 109.45469 * 150.85268 * 5 3 2 15 15 C 1.46897 * 110.99054 * 305.85261 * 14 5 3 16 16 C 1.53004 * 109.47370 * 301.18411 * 15 14 5 17 17 C 1.52992 * 109.47646 * 179.97438 * 16 15 14 18 18 S 1.80998 * 109.47435 * 179.97438 * 17 16 15 19 19 C 1.76195 * 100.00204 * 180.02562 * 18 17 16 20 20 H 1.08010 * 119.99970 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00321 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00182 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99543 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46595 * 90.00460 * 23 21 19 25 25 H 1.48495 * 109.47035 * 210.00136 * 23 21 19 26 26 H 1.48497 * 109.47507 * 330.00290 * 23 21 19 27 27 H 1.09004 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47287 * 299.99209 * 1 2 3 29 29 H 1.08998 * 109.47687 * 59.99806 * 1 2 3 30 30 H 1.09003 * 109.50168 * 60.87689 * 7 5 3 31 31 H 1.08998 * 109.50253 * 300.75696 * 7 5 3 32 32 H 1.08995 * 109.47702 * 299.99946 * 11 10 8 33 33 H 1.09003 * 109.47558 * 60.00414 * 11 10 8 34 34 H 1.09002 * 109.47305 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.49650 * 182.40541 * 12 8 7 36 36 H 1.09000 * 109.53733 * 62.30604 * 12 8 7 37 37 H 1.08999 * 109.45873 * 179.19622 * 13 12 8 38 38 H 1.09000 * 109.46854 * 299.17967 * 13 12 8 39 39 H 1.08998 * 109.47431 * 61.18125 * 15 14 5 40 40 H 1.08999 * 109.47237 * 181.18590 * 15 14 5 41 41 H 1.08996 * 109.46895 * 300.00678 * 16 15 14 42 42 H 1.08999 * 109.46795 * 59.99907 * 16 15 14 43 43 H 1.09002 * 109.47228 * 300.00584 * 17 16 15 44 44 H 1.09009 * 109.47052 * 60.00028 * 17 16 15 45 45 H 0.96994 * 120.00254 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9749 0.4130 -0.5281 7 6 4.0772 1.2790 1.4421 8 6 5.6050 1.3797 1.4369 9 1 5.9705 1.4266 2.4628 10 8 6.1570 0.2347 0.7840 11 6 7.4493 -0.1414 1.2640 12 6 6.0225 2.6475 0.6865 13 6 5.4553 2.6037 -0.7341 14 7 3.9911 2.5083 -0.6749 15 6 3.4026 2.6035 -2.0175 16 6 3.8274 1.3905 -2.8477 17 6 3.2140 1.4893 -4.2458 18 16 3.7171 0.0547 -5.2282 19 6 2.8944 0.4177 -6.7434 20 1 2.3015 1.3159 -6.8343 21 6 3.0081 -0.4507 -7.8203 22 7 2.3939 -0.1792 -8.9524 23 14 4.0341 -2.0038 -7.6633 24 1 3.1780 -3.1152 -7.1764 25 1 4.6001 -2.3592 -8.9893 26 1 5.1395 -1.7715 -6.6993 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.7750 0.3564 1.9377 31 1 3.6579 2.1329 1.9741 32 1 8.1469 0.6823 1.1130 33 1 7.3882 -0.3756 2.3268 34 1 7.7984 -1.0182 0.7187 35 1 7.1103 2.7027 0.6425 36 1 5.6345 3.5234 1.2066 37 1 5.7388 3.5116 -1.2665 38 1 5.8549 1.7355 -1.2582 39 1 2.3159 2.6261 -1.9371 40 1 3.7502 3.5155 -2.5027 41 1 4.9141 1.3678 -2.9281 42 1 3.4798 0.4784 -2.3625 43 1 2.1272 1.5118 -4.1651 44 1 3.5612 2.4014 -4.7313 45 1 2.4736 -0.7858 -9.7050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378482996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:49 Heat of formation + Delta-G solvation = -133.525426 kcal Electronic energy + Delta-G solvation = -25670.397508 eV Core-core repulsion = 22007.298548 eV Total energy + Delta-G solvation = -3663.098960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02758 -39.43566 -37.56163 -36.26179 -34.14868 -32.42120 -31.67826 -31.22238 -28.01074 -26.97240 -26.07756 -25.58971 -24.37273 -23.36584 -21.61702 -21.05299 -19.38788 -17.76924 -17.45935 -17.04708 -16.66766 -16.09911 -15.69859 -15.62310 -15.30899 -15.24533 -14.94547 -14.49836 -14.24284 -13.81820 -13.50029 -13.13175 -13.02469 -12.94787 -12.74312 -12.70042 -12.21457 -12.14739 -11.85537 -11.69354 -11.60065 -11.46862 -11.21384 -11.11259 -11.01928 -10.89179 -10.80040 -10.34427 -10.30136 -10.11193 -9.82344 -9.79245 -8.98928 -8.57640 -8.26544 -6.92367 -6.26662 -3.98665 2.14346 2.55660 3.02807 3.31160 3.45121 3.46620 3.59752 3.83509 4.33152 4.39037 4.45552 4.65876 4.81159 4.83819 4.90950 5.02871 5.05731 5.07622 5.09340 5.12045 5.14964 5.17289 5.29456 5.32327 5.42882 5.47460 5.48613 5.49693 5.52025 5.59062 5.74088 5.78045 5.83940 5.94842 6.04487 6.25218 6.34685 6.40253 6.62269 6.83823 6.91532 6.94533 7.76566 7.97210 8.46354 9.19353 10.82941 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003762 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.231944 B = 7441.018111 C = 8337.446435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.489 6.489 5 C 0.096 3.904 6 H 0.090 0.910 7 C -0.102 4.102 8 C 0.089 3.911 9 H 0.068 0.932 10 O -0.380 6.380 11 C 0.031 3.969 12 C -0.140 4.140 13 C 0.058 3.942 14 N -0.516 5.516 15 C 0.047 3.953 16 C -0.140 4.140 17 C -0.077 4.077 18 S -0.216 6.216 19 C -0.502 4.502 20 H 0.088 0.912 21 C 0.092 3.908 22 N -0.882 5.882 23 Si 0.861 3.139 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.238 1.238 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 2.393 25.244 26.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.307 3.693 4 O -0.375 6.375 5 C -0.013 4.013 6 H 0.108 0.892 7 C -0.140 4.140 8 C 0.031 3.969 9 H 0.086 0.914 10 O -0.299 6.299 11 C -0.065 4.065 12 C -0.178 4.178 13 C -0.069 4.069 14 N -0.241 5.241 15 C -0.082 4.082 16 C -0.180 4.180 17 C -0.226 4.226 18 S 0.011 5.989 19 C -0.649 4.649 20 H 0.106 0.894 21 C -0.116 4.116 22 N -0.519 5.519 23 Si 0.686 3.314 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.162 1.162 27 H 0.120 0.880 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.420 2.057 25.462 26.339 hybrid contribution -0.246 -0.190 -0.955 1.005 sum 6.173 1.867 24.506 25.341 Atomic orbital electron populations 1.23278 0.76172 1.03825 1.02526 1.86526 1.23533 1.33364 1.83950 1.23550 0.91698 0.81491 0.72564 1.90652 1.66812 1.36183 1.43820 1.21129 0.87245 0.95161 0.97810 0.89210 1.21675 0.94245 1.03856 0.94217 1.22131 0.93039 0.86047 0.95683 0.91359 1.87975 1.32946 1.46691 1.62245 1.22784 0.84684 1.00276 0.98767 1.22119 1.00701 0.98108 0.96838 1.22047 0.86082 1.02155 0.96637 1.62096 1.09230 1.33641 1.19154 1.22465 1.00950 0.98427 0.86334 1.22037 1.01606 0.99055 0.95336 1.22944 1.02300 1.01024 0.96330 1.84154 1.69078 1.32024 1.13617 1.22135 1.34965 1.12551 0.95265 0.89443 1.24790 0.94822 0.97858 0.94131 1.69937 1.41876 1.37532 1.02592 0.86673 0.82279 0.83494 0.78921 1.19377 1.20116 1.16202 0.88003 0.92065 0.91616 0.89893 0.89096 0.94070 0.94175 0.89525 0.91008 0.89969 0.89984 0.92861 0.89801 0.89834 0.91028 0.91600 0.91607 0.91293 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.55 101.05 1.07 1.44 16 2 O -0.36 -4.80 10.56 -39.25 -0.41 -5.21 16 3 C 0.47 6.58 6.01 36.01 0.22 6.79 16 4 O -0.49 -7.90 14.92 -18.75 -0.28 -8.18 16 5 C 0.10 1.20 1.62 -68.87 -0.11 1.09 16 6 H 0.09 1.24 6.23 -51.93 -0.32 0.92 16 7 C -0.10 -0.99 5.08 -26.65 -0.14 -1.12 16 8 C 0.09 0.76 2.94 -26.61 -0.08 0.68 16 9 H 0.07 0.45 7.79 -51.93 -0.40 0.04 16 10 O -0.38 -3.85 9.21 -35.23 -0.32 -4.18 16 11 C 0.03 0.23 10.82 101.05 1.09 1.32 16 12 C -0.14 -1.18 5.79 -26.65 -0.15 -1.33 16 13 C 0.06 0.63 4.90 -3.84 -0.02 0.61 16 14 N -0.52 -6.57 4.46 -228.08 -1.02 -7.59 16 15 C 0.05 0.68 4.86 -3.82 -0.02 0.66 16 16 C -0.14 -2.30 4.52 -26.73 -0.12 -2.42 16 17 C -0.08 -1.56 5.67 37.15 0.21 -1.35 16 18 S -0.22 -5.42 19.41 -107.50 -2.09 -7.50 16 19 C -0.50 -14.85 10.04 30.94 0.31 -14.54 16 20 H 0.09 2.76 8.03 -52.48 -0.42 2.34 16 21 C 0.09 2.73 5.50 -17.43 -0.10 2.64 16 22 N -0.88 -27.13 13.97 55.49 0.78 -26.36 16 23 Si 0.86 21.88 27.74 -169.99 -4.71 17.16 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 29 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.26 7.84 -51.93 -0.41 -0.15 16 33 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.52 7.84 -51.93 -0.41 0.11 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.05 0.65 6.36 -51.93 -0.33 0.32 16 39 H 0.08 1.35 6.02 -51.93 -0.31 1.04 16 40 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 41 H 0.07 1.16 6.66 -51.93 -0.35 0.81 16 42 H 0.07 1.12 6.45 -51.93 -0.33 0.79 16 43 H 0.07 1.36 8.14 -51.92 -0.42 0.94 16 44 H 0.07 1.39 8.14 -51.91 -0.42 0.96 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -33.82 368.55 -7.85 -41.66 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.51 Total: 0.16 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 2.16 Total: -5.52 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: -0.24 Total: -33.95 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -1.02 Total: -17.57 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -2.09 Total: -7.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.82 -7.85 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378482996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.861 kcal (2) G-P(sol) polarization free energy of solvation -33.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds