Wall clock time and date at job start Tue Mar 31 2020 11:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34229 * 117.00026 * 2 1 4 4 O 1.20826 * 119.99932 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00125 * 180.02562 * 3 2 1 6 6 H 1.08996 * 109.46170 * 30.86313 * 5 3 2 7 7 C 1.53045 * 109.45998 * 270.88625 * 5 3 2 8 8 C 1.53116 * 109.27636 * 180.81375 * 7 5 3 9 9 H 1.09000 * 109.52542 * 177.55866 * 8 7 5 10 10 O 1.42897 * 109.52617 * 297.75117 * 8 7 5 11 11 C 1.42895 * 114.00023 * 209.68263 * 10 8 7 12 12 C 1.53126 * 109.15807 * 57.65703 * 8 7 5 13 13 C 1.53032 * 109.27751 * 302.33932 * 12 8 7 14 14 N 1.46848 * 109.45469 * 150.85268 * 5 3 2 15 15 C 1.46897 * 110.99054 * 305.85261 * 14 5 3 16 16 C 1.53004 * 109.47370 * 301.18411 * 15 14 5 17 17 C 1.52992 * 109.47646 * 179.97438 * 16 15 14 18 18 S 1.80998 * 109.47435 * 179.97438 * 17 16 15 19 19 C 1.76195 * 100.00204 * 180.02562 * 18 17 16 20 20 H 1.08010 * 119.99970 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00321 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00182 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99543 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.46595 * 90.00460 * 23 21 19 25 25 H 1.48495 * 109.47035 * 210.00136 * 23 21 19 26 26 H 1.48497 * 109.47507 * 330.00290 * 23 21 19 27 27 H 1.09004 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47287 * 299.99209 * 1 2 3 29 29 H 1.08998 * 109.47687 * 59.99806 * 1 2 3 30 30 H 1.09003 * 109.50168 * 60.87689 * 7 5 3 31 31 H 1.08998 * 109.50253 * 300.75696 * 7 5 3 32 32 H 1.08995 * 109.47702 * 299.99946 * 11 10 8 33 33 H 1.09003 * 109.47558 * 60.00414 * 11 10 8 34 34 H 1.09002 * 109.47305 * 179.97438 * 11 10 8 35 35 H 1.09001 * 109.49650 * 182.40541 * 12 8 7 36 36 H 1.09000 * 109.53733 * 62.30604 * 12 8 7 37 37 H 1.08999 * 109.45873 * 179.19622 * 13 12 8 38 38 H 1.09000 * 109.46854 * 299.17967 * 13 12 8 39 39 H 1.08998 * 109.47431 * 61.18125 * 15 14 5 40 40 H 1.08999 * 109.47237 * 181.18590 * 15 14 5 41 41 H 1.08996 * 109.46895 * 300.00678 * 16 15 14 42 42 H 1.08999 * 109.46795 * 59.99907 * 16 15 14 43 43 H 1.09002 * 109.47228 * 300.00584 * 17 16 15 44 44 H 1.09009 * 109.47052 * 60.00028 * 17 16 15 45 45 H 0.96994 * 120.00254 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9749 0.4130 -0.5281 7 6 4.0772 1.2790 1.4421 8 6 5.6050 1.3797 1.4369 9 1 5.9705 1.4266 2.4628 10 8 6.1570 0.2347 0.7840 11 6 7.4493 -0.1414 1.2640 12 6 6.0225 2.6475 0.6865 13 6 5.4553 2.6037 -0.7341 14 7 3.9911 2.5083 -0.6749 15 6 3.4026 2.6035 -2.0175 16 6 3.8274 1.3905 -2.8477 17 6 3.2140 1.4893 -4.2458 18 16 3.7171 0.0547 -5.2282 19 6 2.8944 0.4177 -6.7434 20 1 2.3015 1.3159 -6.8343 21 6 3.0081 -0.4507 -7.8203 22 7 2.3939 -0.1792 -8.9524 23 14 4.0341 -2.0038 -7.6633 24 1 3.1780 -3.1152 -7.1764 25 1 4.6001 -2.3592 -8.9893 26 1 5.1395 -1.7715 -6.6993 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 3.7750 0.3564 1.9377 31 1 3.6579 2.1329 1.9741 32 1 8.1469 0.6823 1.1130 33 1 7.3882 -0.3756 2.3268 34 1 7.7984 -1.0182 0.7187 35 1 7.1103 2.7027 0.6425 36 1 5.6345 3.5234 1.2066 37 1 5.7388 3.5116 -1.2665 38 1 5.8549 1.7355 -1.2582 39 1 2.3159 2.6261 -1.9371 40 1 3.7502 3.5155 -2.5027 41 1 4.9141 1.3678 -2.9281 42 1 3.4798 0.4784 -2.3625 43 1 2.1272 1.5118 -4.1651 44 1 3.5612 2.4014 -4.7313 45 1 2.4736 -0.7858 -9.7050 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378482996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:48 Heat of formation + Delta-G solvation = -156.203819 kcal Electronic energy + Delta-G solvation = -25671.380917 eV Core-core repulsion = 22007.298548 eV Total energy + Delta-G solvation = -3664.082369 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.04493 -40.30934 -38.42601 -37.35085 -35.23209 -34.71168 -32.55024 -32.31130 -28.88838 -28.06353 -27.64565 -26.91495 -25.32544 -24.42945 -22.84507 -21.94627 -20.33103 -19.63993 -18.78495 -18.00735 -17.67372 -17.14788 -16.92681 -16.64165 -16.45762 -16.33780 -16.13618 -15.79074 -15.63944 -14.96413 -14.85058 -14.49971 -14.20696 -13.94195 -13.79327 -13.66523 -13.39979 -13.19716 -13.16734 -13.04541 -12.90711 -12.73024 -12.54235 -12.35011 -12.24632 -11.90589 -11.83262 -11.75865 -11.69392 -11.55017 -11.18920 -11.11480 -10.64511 -10.42892 -9.35717 -9.03465 -8.54325 -6.26520 1.06135 1.09059 1.29989 1.45451 1.60393 1.69955 2.22712 2.64510 2.72836 2.83600 2.96046 3.60409 3.65432 3.78239 3.95103 3.95558 4.03413 4.12015 4.20597 4.21793 4.26485 4.29485 4.35310 4.50397 4.51815 4.59200 4.63730 4.66676 4.68621 4.77667 4.79652 4.83679 4.94600 4.99498 5.00003 5.08766 5.14190 5.26880 5.31991 5.67173 5.79830 5.96353 6.07182 6.34688 6.69998 6.89408 8.59062 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003762 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.231944 B = 7441.018111 C = 8337.446435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.464 3.536 4 O -0.515 6.515 5 C 0.096 3.904 6 H 0.077 0.923 7 C -0.099 4.099 8 C 0.089 3.911 9 H 0.096 0.904 10 O -0.406 6.406 11 C 0.026 3.974 12 C -0.134 4.134 13 C 0.055 3.945 14 N -0.515 5.515 15 C 0.057 3.943 16 C -0.123 4.123 17 C -0.065 4.065 18 S -0.216 6.216 19 C -0.525 4.525 20 H 0.048 0.952 21 C 0.040 3.960 22 N -0.922 5.922 23 Si 0.926 3.074 24 H -0.261 1.261 25 H -0.260 1.260 26 H -0.230 1.230 27 H 0.129 0.871 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.159 1.719 27.476 28.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.403 6.403 5 C -0.013 4.013 6 H 0.094 0.906 7 C -0.137 4.137 8 C 0.032 3.968 9 H 0.113 0.887 10 O -0.326 6.326 11 C -0.070 4.070 12 C -0.172 4.172 13 C -0.072 4.072 14 N -0.240 5.240 15 C -0.073 4.073 16 C -0.163 4.163 17 C -0.215 4.215 18 S 0.012 5.988 19 C -0.672 4.672 20 H 0.067 0.933 21 C -0.165 4.165 22 N -0.560 5.560 23 Si 0.746 3.254 24 H -0.186 1.186 25 H -0.184 1.184 26 H -0.153 1.153 27 H 0.147 0.853 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.265 1.382 27.705 28.944 hybrid contribution -0.903 0.089 -1.615 1.852 sum 7.363 1.472 26.090 27.149 Atomic orbital electron populations 1.23533 0.74797 1.05667 1.02456 1.86520 1.25036 1.33121 1.83632 1.23937 0.92390 0.81288 0.71718 1.90634 1.67482 1.36931 1.45228 1.21227 0.86149 0.94362 0.99577 0.90565 1.21728 0.95392 1.04531 0.92061 1.22203 0.91962 0.85629 0.97031 0.88660 1.87946 1.34247 1.47261 1.63097 1.22921 0.83770 1.00642 0.99629 1.22118 1.01616 0.98466 0.95010 1.22168 0.84620 1.01822 0.98602 1.62160 1.10509 1.33784 1.17497 1.22300 1.00061 0.97668 0.87274 1.21911 1.01573 0.99945 0.92869 1.23000 1.02001 0.98811 0.97651 1.83826 1.68567 1.34782 1.11644 1.22336 1.35303 1.11547 0.98054 0.93333 1.25771 0.95890 1.01230 0.93589 1.70035 1.43207 1.39150 1.03582 0.85717 0.80806 0.79039 0.79800 1.18583 1.18445 1.15302 0.85274 0.90951 0.92904 0.89156 0.88519 0.93012 0.92656 0.89726 0.89307 0.89088 0.89286 0.94240 0.91572 0.88853 0.90329 0.92242 0.92504 0.91136 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.55 113.37 1.20 1.78 16 2 O -0.37 -9.71 10.56 -51.41 -0.54 -10.25 16 3 C 0.46 12.97 6.01 71.24 0.43 13.39 16 4 O -0.52 -16.65 14.92 21.96 0.33 -16.32 16 5 C 0.10 2.32 1.62 44.19 0.07 2.40 16 6 H 0.08 2.06 6.23 -2.39 -0.01 2.05 16 7 C -0.10 -1.73 5.08 30.65 0.16 -1.57 16 8 C 0.09 1.27 2.94 30.68 0.09 1.36 16 9 H 0.10 0.88 7.79 -2.39 -0.02 0.86 16 10 O -0.41 -7.34 9.21 -148.98 -1.37 -8.71 16 11 C 0.03 0.31 10.82 113.37 1.23 1.54 16 12 C -0.13 -1.87 5.79 30.65 0.18 -1.69 16 13 C 0.05 1.08 4.90 86.32 0.42 1.51 16 14 N -0.51 -12.50 4.46 -875.50 -3.90 -16.40 16 15 C 0.06 1.61 4.86 86.31 0.42 2.03 16 16 C -0.12 -3.96 4.52 30.59 0.14 -3.83 16 17 C -0.07 -2.67 5.67 71.98 0.41 -2.27 16 18 S -0.22 -10.79 19.41 -56.49 -1.10 -11.88 16 19 C -0.52 -31.85 10.04 67.96 0.68 -31.17 16 20 H 0.05 3.21 8.03 -2.91 -0.02 3.19 16 21 C 0.04 2.40 5.50 84.86 0.47 2.86 16 22 N -0.92 -57.64 13.97 21.65 0.30 -57.34 16 23 Si 0.93 44.84 27.74 68.60 1.90 46.74 16 24 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.23 -10.74 6.74 99.48 0.67 -10.07 16 27 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.07 1.31 8.13 -2.38 -0.02 1.29 16 29 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 0.49 7.84 -2.39 -0.02 0.47 16 33 H 0.05 0.48 8.09 -2.39 -0.02 0.46 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 0.97 7.84 -2.39 -0.02 0.95 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.63 8.07 -2.39 -0.02 1.61 16 38 H 0.04 0.90 6.36 -2.39 -0.02 0.89 16 39 H 0.07 2.14 6.02 -2.39 -0.01 2.13 16 40 H 0.09 2.46 8.07 -2.39 -0.02 2.44 16 41 H 0.08 2.45 6.66 -2.39 -0.02 2.44 16 42 H 0.06 2.01 6.45 -2.39 -0.02 2.00 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.28 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -73.75 368.55 2.43 -71.32 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.93 Total: 16.50 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 5.88 Total: -13.65 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -3.60 Total: -73.74 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.59 Total: -35.29 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -10.79 SS G_CDS: -1.10 Total: -11.88 kcal Total: -73.75 2.43 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378482996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.881 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds