Wall clock time and date at job start Tue Mar 31 2020 11:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00044 * 2 1 4 4 O 1.20826 * 120.00007 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00084 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.45528 * 333.14741 * 5 3 2 7 7 C 1.53039 * 109.46373 * 93.12173 * 5 3 2 8 8 C 1.53118 * 109.28053 * 179.19799 * 7 5 3 9 9 H 1.09000 * 109.51965 * 182.44312 * 8 7 5 10 10 O 1.42896 * 109.52221 * 62.25228 * 8 7 5 11 11 C 1.42900 * 114.00105 * 150.00582 * 10 8 7 12 12 C 1.53116 * 109.15960 * 302.34377 * 8 7 5 13 13 C 1.53036 * 109.27881 * 57.65645 * 12 8 7 14 14 N 1.46843 * 109.46543 * 213.17417 * 5 3 2 15 15 C 1.46900 * 110.99837 * 54.14585 * 14 5 3 16 16 C 1.53004 * 109.47167 * 176.37189 * 15 14 5 17 17 C 1.52999 * 109.47196 * 179.97438 * 16 15 14 18 18 S 1.80997 * 109.47107 * 179.97438 * 17 16 15 19 19 C 1.76202 * 99.99932 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00202 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99843 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00068 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46946 * 89.99983 * 23 21 19 25 25 H 1.48498 * 109.47151 * 209.99891 * 23 21 19 26 26 H 1.48507 * 109.46946 * 330.00061 * 23 21 19 27 27 H 1.08993 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46578 * 299.99978 * 1 2 3 29 29 H 1.08999 * 109.47039 * 59.99934 * 1 2 3 30 30 H 1.09004 * 109.50135 * 299.13812 * 7 5 3 31 31 H 1.08996 * 109.50186 * 59.21180 * 7 5 3 32 32 H 1.09000 * 109.47224 * 180.02562 * 11 10 8 33 33 H 1.09008 * 109.46660 * 299.99057 * 11 10 8 34 34 H 1.08990 * 109.47189 * 59.99195 * 11 10 8 35 35 H 1.08997 * 109.50491 * 177.59246 * 12 8 7 36 36 H 1.09000 * 109.50199 * 297.67635 * 12 8 7 37 37 H 1.08996 * 109.46418 * 60.83410 * 13 12 8 38 38 H 1.09000 * 109.46576 * 180.80906 * 13 12 8 39 39 H 1.09007 * 109.46990 * 296.36850 * 15 14 5 40 40 H 1.08996 * 109.47571 * 56.37200 * 15 14 5 41 41 H 1.08998 * 109.46794 * 300.00022 * 16 15 14 42 42 H 1.08998 * 109.47178 * 60.00012 * 16 15 14 43 43 H 1.08998 * 109.47384 * 299.99804 * 17 16 15 44 44 H 1.09005 * 109.47062 * 59.99660 * 17 16 15 45 45 H 0.97004 * 119.99865 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9771 0.3781 0.4633 7 6 4.0709 1.3803 -1.4416 8 6 5.5988 1.4803 -1.4362 9 1 5.9596 1.5992 -2.4579 10 8 6.1532 0.2922 -0.8679 11 6 7.4402 -0.0532 -1.3840 12 6 6.0202 2.6922 -0.6005 13 6 5.4592 2.5487 0.8161 14 7 3.9947 2.4575 0.7571 15 6 3.4124 2.4580 2.1057 16 6 3.9514 3.6538 2.8935 17 6 3.3444 3.6547 4.2980 18 16 3.9826 5.0688 5.2301 19 6 3.1435 4.8300 6.7610 20 1 2.4733 3.9922 6.8845 21 6 3.3438 5.7187 7.8083 22 7 2.7166 5.5405 8.9517 23 14 4.5025 7.1682 7.5945 24 1 3.7445 8.3356 7.0769 25 1 5.1099 7.5138 8.9048 26 1 5.5742 6.8075 6.6318 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.7662 0.4949 -1.9995 31 1 3.6490 2.2691 -1.9107 32 1 7.7915 -0.9660 -0.9029 33 1 7.3689 -0.2143 -2.4598 34 1 8.1414 0.7567 -1.1835 35 1 7.1080 2.7441 -0.5575 36 1 5.6301 3.6021 -1.0566 37 1 5.8610 1.6460 1.2761 38 1 5.7453 3.4169 1.4097 39 1 2.3272 2.5302 2.0329 40 1 3.6816 1.5344 2.6181 41 1 5.0365 3.5816 2.9663 42 1 3.6822 4.5775 2.3813 43 1 2.2593 3.7271 4.2249 44 1 3.6132 2.7309 4.8105 45 1 2.8569 6.1614 9.6837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378482997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:51 Heat of formation + Delta-G solvation = -132.918905 kcal Electronic energy + Delta-G solvation = -25125.879253 eV Core-core repulsion = 21462.806594 eV Total energy + Delta-G solvation = -3663.072660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.03111 -39.50025 -37.54688 -36.37230 -34.28129 -32.40994 -31.76709 -31.29117 -28.12733 -27.04747 -26.12855 -25.56522 -24.40020 -23.65089 -21.18483 -20.73930 -19.81336 -17.96697 -17.47447 -17.11253 -16.68853 -16.30741 -15.82077 -15.64573 -15.36776 -15.05849 -14.94352 -14.74263 -14.04108 -13.97361 -13.67159 -13.25145 -13.12576 -12.93109 -12.81221 -12.62802 -12.34419 -12.11180 -11.99350 -11.79081 -11.52089 -11.36652 -11.30484 -11.08223 -11.01913 -10.92247 -10.88081 -10.36327 -10.26221 -10.10564 -9.82337 -9.72248 -8.97633 -8.53093 -8.42608 -6.90613 -6.25542 -3.97325 2.03826 2.42994 3.02635 3.32731 3.37859 3.47499 3.56469 3.81692 4.33618 4.34405 4.40782 4.62131 4.76108 4.82966 4.86712 4.92100 4.96878 5.00401 5.01158 5.02675 5.13172 5.20988 5.22331 5.31499 5.32953 5.33716 5.39267 5.47404 5.61327 5.63177 5.69666 5.72408 5.87235 5.97614 6.04815 6.20735 6.24452 6.51955 6.64322 6.83437 6.86765 6.92729 7.66325 7.98382 8.47620 9.20417 10.84079 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.003102 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.813525 B = 9023.679039 C =10413.614971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.482 6.482 5 C 0.103 3.897 6 H 0.081 0.919 7 C -0.101 4.101 8 C 0.089 3.911 9 H 0.069 0.931 10 O -0.383 6.383 11 C 0.031 3.969 12 C -0.140 4.140 13 C 0.056 3.944 14 N -0.519 5.519 15 C 0.051 3.949 16 C -0.098 4.098 17 C -0.082 4.082 18 S -0.214 6.214 19 C -0.501 4.501 20 H 0.087 0.913 21 C 0.091 3.909 22 N -0.883 5.883 23 Si 0.862 3.138 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.238 1.238 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 -12.841 -25.239 28.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.302 3.698 4 O -0.366 6.366 5 C -0.007 4.007 6 H 0.099 0.901 7 C -0.139 4.139 8 C 0.031 3.969 9 H 0.087 0.913 10 O -0.302 6.302 11 C -0.065 4.065 12 C -0.178 4.178 13 C -0.071 4.071 14 N -0.245 5.245 15 C -0.077 4.077 16 C -0.136 4.136 17 C -0.231 4.231 18 S 0.014 5.986 19 C -0.649 4.649 20 H 0.105 0.895 21 C -0.117 4.117 22 N -0.520 5.520 23 Si 0.687 3.313 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.162 1.162 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.660 -11.360 -25.452 28.441 hybrid contribution -0.318 -0.821 0.876 1.242 sum 5.342 -12.181 -24.576 27.945 Atomic orbital electron populations 1.23276 0.76216 1.03665 1.02727 1.86513 1.23510 1.33594 1.84224 1.23628 0.91765 0.81483 0.72946 1.90697 1.66689 1.36086 1.43155 1.21087 0.87039 0.95113 0.97475 0.90096 1.21670 0.94310 1.03984 0.93949 1.22146 0.92908 0.85348 0.96452 0.91289 1.87934 1.33419 1.43316 1.65520 1.22781 0.84851 1.00647 0.98242 1.22125 1.00795 0.98492 0.96402 1.22145 0.85744 1.02305 0.96903 1.61844 1.09459 1.37100 1.16130 1.22327 1.00504 0.98177 0.86713 1.21401 1.00339 0.98154 0.93720 1.23008 1.02473 1.00956 0.96656 1.84105 1.63087 1.36721 1.14701 1.22132 1.30644 1.16520 0.95579 0.89454 1.24800 0.95336 0.97469 0.94096 1.69941 1.41490 1.37383 1.03173 0.86659 0.82609 0.83055 0.78952 1.19358 1.20148 1.16170 0.88105 0.91673 0.91901 0.90012 0.88852 0.89658 0.94134 0.93953 0.90933 0.89733 0.93606 0.88885 0.90074 0.94668 0.91235 0.90412 0.91392 0.91569 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.17 10.57 -39.24 -0.41 -4.58 16 3 C 0.46 5.98 5.97 36.01 0.21 6.19 16 4 O -0.48 -7.58 15.21 -18.75 -0.29 -7.87 16 5 C 0.10 1.19 2.20 -68.87 -0.15 1.03 16 6 H 0.08 0.95 7.76 -51.93 -0.40 0.55 16 7 C -0.10 -0.91 5.08 -26.65 -0.14 -1.05 16 8 C 0.09 0.72 2.94 -26.61 -0.08 0.64 16 9 H 0.07 0.43 7.79 -51.93 -0.40 0.02 16 10 O -0.38 -3.47 9.21 -35.23 -0.32 -3.79 16 11 C 0.03 0.19 10.82 101.05 1.09 1.29 16 12 C -0.14 -1.21 5.79 -26.65 -0.15 -1.37 16 13 C 0.06 0.62 4.91 -3.83 -0.02 0.61 16 14 N -0.52 -6.66 4.37 -228.07 -1.00 -7.66 16 15 C 0.05 0.76 4.59 -3.82 -0.02 0.74 16 16 C -0.10 -1.60 4.73 -26.73 -0.13 -1.73 16 17 C -0.08 -1.67 5.67 37.16 0.21 -1.46 16 18 S -0.21 -5.35 19.41 -107.50 -2.09 -7.43 16 19 C -0.50 -14.87 10.04 30.94 0.31 -14.56 16 20 H 0.09 2.76 8.03 -52.49 -0.42 2.34 16 21 C 0.09 2.71 5.50 -17.43 -0.10 2.61 16 22 N -0.88 -27.23 13.97 55.49 0.78 -26.45 16 23 Si 0.86 21.89 27.74 -169.99 -4.72 17.18 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 27 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.20 8.09 -51.92 -0.42 -0.22 16 34 H 0.04 0.24 7.86 -51.93 -0.41 -0.17 16 35 H 0.07 0.54 7.86 -51.93 -0.41 0.13 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.53 7.76 -51.93 -0.40 0.13 16 38 H 0.09 1.09 5.84 -51.93 -0.30 0.78 16 39 H 0.08 1.31 6.26 -51.93 -0.32 0.99 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.08 6.19 -51.93 -0.32 0.76 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 44 H 0.07 1.34 8.14 -51.91 -0.42 0.92 16 45 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 371.52 15.07 5.60 5.60 Total: -1.00 -33.92 371.52 -7.95 -41.87 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -7.62 Total: -1.19 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 2.12 Total: -5.67 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: -0.22 Total: -34.11 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -1.02 Total: -16.24 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -2.09 Total: -7.43 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.92 -7.95 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378482997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.050 kcal (2) G-P(sol) polarization free energy of solvation -33.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds