Wall clock time and date at job start Tue Mar 31 2020 11:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34225 * 117.00044 * 2 1 4 4 O 1.20826 * 120.00007 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00084 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.45528 * 333.14741 * 5 3 2 7 7 C 1.53039 * 109.46373 * 93.12173 * 5 3 2 8 8 C 1.53118 * 109.28053 * 179.19799 * 7 5 3 9 9 H 1.09000 * 109.51965 * 182.44312 * 8 7 5 10 10 O 1.42896 * 109.52221 * 62.25228 * 8 7 5 11 11 C 1.42900 * 114.00105 * 150.00582 * 10 8 7 12 12 C 1.53116 * 109.15960 * 302.34377 * 8 7 5 13 13 C 1.53036 * 109.27881 * 57.65645 * 12 8 7 14 14 N 1.46843 * 109.46543 * 213.17417 * 5 3 2 15 15 C 1.46900 * 110.99837 * 54.14585 * 14 5 3 16 16 C 1.53004 * 109.47167 * 176.37189 * 15 14 5 17 17 C 1.52999 * 109.47196 * 179.97438 * 16 15 14 18 18 S 1.80997 * 109.47107 * 179.97438 * 17 16 15 19 19 C 1.76202 * 99.99932 * 179.97438 * 18 17 16 20 20 H 1.07995 * 120.00202 * 0.02562 * 19 18 17 21 21 C 1.38804 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99843 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00068 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46946 * 89.99983 * 23 21 19 25 25 H 1.48498 * 109.47151 * 209.99891 * 23 21 19 26 26 H 1.48507 * 109.46946 * 330.00061 * 23 21 19 27 27 H 1.08993 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46578 * 299.99978 * 1 2 3 29 29 H 1.08999 * 109.47039 * 59.99934 * 1 2 3 30 30 H 1.09004 * 109.50135 * 299.13812 * 7 5 3 31 31 H 1.08996 * 109.50186 * 59.21180 * 7 5 3 32 32 H 1.09000 * 109.47224 * 180.02562 * 11 10 8 33 33 H 1.09008 * 109.46660 * 299.99057 * 11 10 8 34 34 H 1.08990 * 109.47189 * 59.99195 * 11 10 8 35 35 H 1.08997 * 109.50491 * 177.59246 * 12 8 7 36 36 H 1.09000 * 109.50199 * 297.67635 * 12 8 7 37 37 H 1.08996 * 109.46418 * 60.83410 * 13 12 8 38 38 H 1.09000 * 109.46576 * 180.80906 * 13 12 8 39 39 H 1.09007 * 109.46990 * 296.36850 * 15 14 5 40 40 H 1.08996 * 109.47571 * 56.37200 * 15 14 5 41 41 H 1.08998 * 109.46794 * 300.00022 * 16 15 14 42 42 H 1.08998 * 109.47178 * 60.00012 * 16 15 14 43 43 H 1.08998 * 109.47384 * 299.99804 * 17 16 15 44 44 H 1.09005 * 109.47062 * 59.99660 * 17 16 15 45 45 H 0.97004 * 119.99865 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9771 0.3781 0.4633 7 6 4.0709 1.3803 -1.4416 8 6 5.5988 1.4803 -1.4362 9 1 5.9596 1.5992 -2.4579 10 8 6.1532 0.2922 -0.8679 11 6 7.4402 -0.0532 -1.3840 12 6 6.0202 2.6922 -0.6005 13 6 5.4592 2.5487 0.8161 14 7 3.9947 2.4575 0.7571 15 6 3.4124 2.4580 2.1057 16 6 3.9514 3.6538 2.8935 17 6 3.3444 3.6547 4.2980 18 16 3.9826 5.0688 5.2301 19 6 3.1435 4.8300 6.7610 20 1 2.4733 3.9922 6.8845 21 6 3.3438 5.7187 7.8083 22 7 2.7166 5.5405 8.9517 23 14 4.5025 7.1682 7.5945 24 1 3.7445 8.3356 7.0769 25 1 5.1099 7.5138 8.9048 26 1 5.5742 6.8075 6.6318 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.7662 0.4949 -1.9995 31 1 3.6490 2.2691 -1.9107 32 1 7.7915 -0.9660 -0.9029 33 1 7.3689 -0.2143 -2.4598 34 1 8.1414 0.7567 -1.1835 35 1 7.1080 2.7441 -0.5575 36 1 5.6301 3.6021 -1.0566 37 1 5.8610 1.6460 1.2761 38 1 5.7453 3.4169 1.4097 39 1 2.3272 2.5302 2.0329 40 1 3.6816 1.5344 2.6181 41 1 5.0365 3.5816 2.9663 42 1 3.6822 4.5775 2.3813 43 1 2.2593 3.7271 4.2249 44 1 3.6132 2.7309 4.8105 45 1 2.8569 6.1614 9.6837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378482997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:51 Heat of formation + Delta-G solvation = -155.521075 kcal Electronic energy + Delta-G solvation = -25126.859357 eV Core-core repulsion = 21462.806594 eV Total energy + Delta-G solvation = -3664.052763 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97901 -40.30385 -38.36251 -37.37877 -35.37836 -34.70299 -32.60392 -32.34295 -28.90109 -28.07692 -27.64736 -26.94511 -25.23113 -24.77360 -22.04432 -22.00316 -20.62671 -19.64619 -18.87675 -18.07839 -17.56484 -17.13553 -17.09315 -16.78737 -16.34453 -16.26432 -16.12481 -15.83136 -15.53848 -14.98910 -14.89944 -14.48478 -14.23760 -13.99657 -13.86383 -13.67694 -13.42770 -13.24781 -13.18033 -13.05340 -12.94717 -12.64188 -12.46761 -12.23996 -12.06055 -12.02601 -11.84604 -11.80432 -11.69589 -11.44537 -11.17755 -11.15723 -10.60814 -10.41996 -9.42925 -9.01258 -8.53439 -6.25236 1.03880 1.10174 1.32043 1.46923 1.56647 1.70807 2.24078 2.63352 2.70713 2.84534 2.92920 3.58468 3.65833 3.81901 3.95682 3.98708 4.01777 4.14186 4.19134 4.25351 4.26824 4.28640 4.32877 4.49210 4.52549 4.60493 4.61789 4.66337 4.67366 4.68893 4.81898 4.83920 4.95494 5.01528 5.03380 5.11432 5.16064 5.26296 5.28228 5.67999 5.81252 5.95236 6.08146 6.31829 6.69095 6.90132 8.59985 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014735 B = 0.003102 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.813525 B = 9023.679039 C =10413.614971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.462 3.538 4 O -0.516 6.516 5 C 0.103 3.897 6 H 0.080 0.920 7 C -0.098 4.098 8 C 0.092 3.908 9 H 0.095 0.905 10 O -0.404 6.404 11 C 0.026 3.974 12 C -0.136 4.136 13 C 0.054 3.946 14 N -0.525 5.525 15 C 0.062 3.938 16 C -0.082 4.082 17 C -0.071 4.071 18 S -0.209 6.209 19 C -0.526 4.526 20 H 0.048 0.952 21 C 0.037 3.963 22 N -0.923 5.923 23 Si 0.928 3.072 24 H -0.262 1.262 25 H -0.261 1.261 26 H -0.227 1.227 27 H 0.133 0.867 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.387 -12.865 -27.496 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.304 3.696 4 O -0.403 6.403 5 C -0.006 4.006 6 H 0.098 0.902 7 C -0.136 4.136 8 C 0.034 3.966 9 H 0.113 0.887 10 O -0.324 6.324 11 C -0.070 4.070 12 C -0.174 4.174 13 C -0.072 4.072 14 N -0.251 5.251 15 C -0.068 4.068 16 C -0.121 4.121 17 C -0.220 4.220 18 S 0.019 5.981 19 C -0.673 4.673 20 H 0.066 0.934 21 C -0.168 4.168 22 N -0.561 5.561 23 Si 0.748 3.252 24 H -0.186 1.186 25 H -0.185 1.185 26 H -0.150 1.150 27 H 0.151 0.849 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.568 -11.414 -27.718 30.917 hybrid contribution -1.007 -0.970 1.549 2.087 sum 6.561 -12.385 -26.169 29.685 Atomic orbital electron populations 1.23548 0.74759 1.05757 1.02445 1.86510 1.25008 1.32837 1.83713 1.23970 0.92368 0.81344 0.71880 1.90680 1.67498 1.37169 1.44967 1.21199 0.86111 0.94364 0.98947 0.90221 1.21712 0.95264 1.04599 0.92029 1.22160 0.91992 0.84823 0.97579 0.88734 1.87910 1.34675 1.43553 1.66216 1.22934 0.83855 1.01080 0.99142 1.22124 1.01618 0.98985 0.94671 1.22206 0.84552 1.01701 0.98765 1.61832 1.10563 1.38074 1.14680 1.22083 0.99482 0.97272 0.87944 1.21263 1.00836 0.98848 0.91158 1.23057 1.01975 0.98766 0.98232 1.83734 1.62677 1.39297 1.12388 1.22351 1.30824 1.15641 0.98490 0.93419 1.25816 0.96962 1.00390 0.93583 1.70042 1.42997 1.38854 1.04225 0.85686 0.80577 0.79076 0.79830 1.18636 1.18526 1.14992 0.84856 0.92770 0.91426 0.88703 0.88916 0.89311 0.92712 0.93264 0.89346 0.89527 0.94077 0.89540 0.91850 0.94426 0.89887 0.90821 0.92374 0.91613 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.56 113.37 1.20 1.67 16 2 O -0.36 -8.14 10.57 -51.37 -0.54 -8.68 16 3 C 0.46 11.82 5.97 71.24 0.42 12.25 16 4 O -0.52 -16.37 15.21 21.96 0.33 -16.04 16 5 C 0.10 2.28 2.20 44.19 0.10 2.38 16 6 H 0.08 1.79 7.76 -2.39 -0.02 1.78 16 7 C -0.10 -1.58 5.08 30.65 0.16 -1.42 16 8 C 0.09 1.23 2.94 30.67 0.09 1.32 16 9 H 0.09 0.82 7.79 -2.39 -0.02 0.80 16 10 O -0.40 -6.32 9.21 -148.98 -1.37 -7.70 16 11 C 0.03 0.25 10.82 113.37 1.23 1.48 16 12 C -0.14 -2.01 5.79 30.65 0.18 -1.83 16 13 C 0.05 1.12 4.91 86.32 0.42 1.55 16 14 N -0.52 -12.99 4.37 -875.49 -3.83 -16.81 16 15 C 0.06 1.80 4.59 86.30 0.40 2.19 16 16 C -0.08 -2.65 4.73 30.60 0.14 -2.51 16 17 C -0.07 -2.92 5.67 71.98 0.41 -2.51 16 18 S -0.21 -10.38 19.41 -56.49 -1.10 -11.48 16 19 C -0.53 -31.95 10.04 67.96 0.68 -31.27 16 20 H 0.05 3.17 8.03 -2.91 -0.02 3.14 16 21 C 0.04 2.23 5.50 84.86 0.47 2.69 16 22 N -0.92 -57.98 13.97 21.65 0.30 -57.68 16 23 Si 0.93 44.81 27.74 68.60 1.90 46.72 16 24 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 25 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.23 -10.47 6.74 99.48 0.67 -9.80 16 27 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.03 8.13 -2.38 -0.02 1.01 16 29 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 30 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.37 8.09 -2.38 -0.02 0.35 16 34 H 0.05 0.41 7.86 -2.39 -0.02 0.39 16 35 H 0.09 1.04 7.86 -2.39 -0.02 1.02 16 36 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.04 0.89 7.76 -2.39 -0.02 0.87 16 38 H 0.09 1.88 5.84 -2.39 -0.01 1.86 16 39 H 0.06 2.09 6.26 -2.38 -0.01 2.07 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 2.47 6.19 -2.39 -0.01 2.46 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.06 2.48 8.14 -2.40 -0.02 2.46 16 44 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.28 15.98 8.31 -92.70 -0.77 15.21 16 Total: -1.00 -74.04 371.52 2.51 -71.53 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.92 Total: 14.15 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 5.89 Total: -14.02 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -3.53 Total: -74.49 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.58 Total: -32.41 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.72 kcal Atomic # 16 Polarization: -10.38 SS G_CDS: -1.10 Total: -11.48 kcal Total: -74.04 2.51 -71.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378482997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.989 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds