Wall clock time and date at job start Tue Mar 31 2020 11:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 111.00124 * 2 1 4 4 C 1.50700 * 109.46833 * 293.95755 * 3 2 1 5 5 H 1.07999 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99675 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99950 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99864 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47435 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47204 * 120.00287 * 8 6 4 11 11 H 1.48502 * 109.47338 * 240.00059 * 8 6 4 12 12 C 1.46900 * 111.00108 * 123.95402 * 2 1 3 13 13 C 1.53005 * 109.46989 * 66.04665 * 12 2 1 14 14 H 1.09002 * 109.46952 * 304.99959 * 13 12 2 15 15 O 1.42900 * 109.47177 * 65.00252 * 13 12 2 16 16 C 1.52999 * 109.46826 * 184.99975 * 13 12 2 17 17 O 1.42905 * 109.47102 * 174.99762 * 16 13 12 18 18 C 1.35894 * 117.00243 * 179.97438 * 17 16 13 19 19 C 1.39828 * 119.57814 * 0.02562 * 18 17 16 20 20 C 1.36122 * 121.03245 * 179.73688 * 19 18 17 21 21 C 1.40299 * 119.65963 * 0.25871 * 20 19 18 22 22 N 1.33886 * 121.99037 * 179.97438 * 21 20 19 23 23 C 1.31119 * 120.27383 * 180.02562 * 22 21 20 24 24 N 1.32515 * 122.86215 * 0.02562 * 23 22 21 25 25 C 1.31770 * 121.62052 * 359.97438 * 24 23 22 26 26 C 1.40668 * 118.34708 * 359.97438 * 25 24 23 27 27 C 1.36680 * 119.58334 * 180.26610 * 18 17 16 28 28 H 1.09000 * 109.47555 * 296.04332 * 1 2 3 29 29 H 1.08998 * 109.47378 * 56.04464 * 1 2 3 30 30 H 1.08998 * 109.47070 * 176.04463 * 1 2 3 31 31 H 1.08998 * 109.46640 * 53.95442 * 3 2 1 32 32 H 1.08997 * 109.47130 * 173.95301 * 3 2 1 33 33 H 0.96999 * 119.99591 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47129 * 306.04754 * 12 2 1 35 35 H 1.09006 * 109.47144 * 186.04664 * 12 2 1 36 36 H 0.96699 * 113.99693 * 59.99423 * 15 13 12 37 37 H 1.09005 * 109.47440 * 55.00077 * 16 13 12 38 38 H 1.08999 * 109.47519 * 295.00152 * 16 13 12 39 39 H 1.08002 * 119.48707 * 0.02562 * 19 18 17 40 40 H 1.08004 * 120.16625 * 180.23333 * 20 19 18 41 41 H 1.07998 * 118.56779 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.82507 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.27631 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2984 5 1 1.0745 1.5112 -2.0487 6 6 2.0267 3.3495 -1.5284 7 7 2.7110 4.0022 -0.6145 8 14 1.5828 4.1868 -3.1382 9 1 0.8165 3.2438 -3.9919 10 1 0.7549 5.3877 -2.8596 11 1 2.8247 4.5944 -3.8430 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2427 0.9703 14 1 0.5531 -2.3389 0.8432 15 8 2.2956 -2.7696 -0.1800 16 6 2.0700 -3.0199 2.2130 17 8 1.6272 -4.3746 2.1085 18 6 1.9373 -5.2062 3.1375 19 6 2.6585 -4.7138 4.2296 20 6 2.9804 -5.5193 5.2787 21 6 2.5888 -6.8665 5.2653 22 7 2.8808 -7.7000 6.2716 23 6 2.4985 -8.9533 6.2239 24 7 1.8188 -9.4595 5.2051 25 6 1.4817 -8.7232 4.1656 26 6 1.8611 -7.3687 4.1553 27 6 1.5445 -6.5145 3.0897 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3444 0.1083 33 1 2.9856 4.9183 -0.7765 34 1 1.5611 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 3.2601 -2.7166 -0.1360 37 1 1.6330 -2.5624 3.1007 38 1 3.1570 -2.9978 2.2907 39 1 2.9609 -3.6771 4.2431 40 1 3.5347 -5.1233 6.1168 41 1 2.7485 -9.6013 7.0509 42 1 0.9272 -9.1489 3.3423 43 1 0.9907 -6.8861 2.2401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414121798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:09 Heat of formation + Delta-G solvation = -11.124304 kcal Electronic energy + Delta-G solvation = -25020.421334 eV Core-core repulsion = 21259.478885 eV Total energy + Delta-G solvation = -3760.942450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73660 -40.03349 -38.04615 -36.71151 -35.49210 -34.44074 -32.60550 -31.79318 -31.01480 -29.68263 -27.36069 -26.59157 -25.50219 -24.62147 -23.67425 -22.87284 -21.51587 -20.41124 -19.25135 -18.76269 -17.82816 -16.71960 -16.61478 -16.38533 -15.96388 -15.49859 -15.38579 -15.04670 -14.78111 -14.46736 -14.43912 -14.20896 -13.80575 -13.67924 -13.53370 -13.27376 -12.75303 -12.45901 -12.00085 -11.92726 -11.69892 -11.47998 -11.36399 -11.19547 -11.00073 -10.96079 -10.85261 -10.71582 -10.38757 -10.11325 -9.79057 -9.62019 -9.60648 -9.21964 -8.49537 -8.36082 -7.32575 -6.08489 -4.09593 -0.20434 0.30338 1.45862 2.52933 2.72910 3.28105 3.35771 3.41198 3.66469 3.71713 3.79475 3.96939 4.15145 4.31986 4.35736 4.43606 4.54427 4.67502 4.75950 4.81769 4.97576 5.12588 5.16999 5.24734 5.28063 5.29683 5.43215 5.44229 5.47475 5.75416 5.86690 5.91601 6.05376 6.07476 6.14716 6.24961 6.58592 6.69171 6.96735 7.17150 7.23034 7.71643 7.72846 7.83017 8.00067 8.09836 8.46035 8.98577 9.55040 11.02506 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.044492 B = 0.001919 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.172514 B =14583.874723 C =14955.283030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.108 0.892 15 O -0.537 6.537 16 C 0.022 3.978 17 O -0.296 6.296 18 C 0.138 3.862 19 C -0.152 4.152 20 C -0.061 4.061 21 C 0.125 3.875 22 N -0.496 5.496 23 C 0.280 3.720 24 N -0.521 5.521 25 C 0.191 3.809 26 C -0.125 4.125 27 C -0.131 4.131 28 H 0.010 0.990 29 H 0.077 0.923 30 H 0.048 0.952 31 H -0.009 1.009 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.370 0.630 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.195 0.805 42 H 0.177 0.823 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -22.204 12.530 25.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.102 4.102 13 C 0.056 3.944 14 H 0.126 0.874 15 O -0.341 6.341 16 C -0.054 4.054 17 O -0.208 6.208 18 C 0.092 3.908 19 C -0.174 4.174 20 C -0.079 4.079 21 C -0.004 4.004 22 N -0.209 5.209 23 C -0.009 4.009 24 N -0.234 5.234 25 C 0.011 3.989 26 C -0.129 4.129 27 C -0.152 4.152 28 H 0.029 0.971 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.009 0.991 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.217 0.783 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.211 0.789 42 H 0.194 0.806 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.791 -22.891 12.651 26.167 hybrid contribution 0.094 1.866 -0.222 1.882 sum -0.697 -21.025 12.429 24.434 Atomic orbital electron populations 1.22294 0.88768 0.99736 1.00691 1.62011 1.07031 1.17616 1.38653 1.19765 0.95316 0.81296 0.96834 1.21195 1.34803 0.96854 1.01648 0.91653 1.25001 0.95274 0.97353 0.97091 1.69964 1.38487 1.11437 1.34060 0.86420 0.78185 0.79269 0.83437 1.19582 1.21120 1.20989 1.22632 1.00902 0.92655 0.94019 1.21977 0.98938 0.90685 0.82847 0.87448 1.86654 1.23128 1.83703 1.40599 1.23851 1.00026 0.80036 1.01440 1.86230 1.73602 1.21106 1.39903 1.18816 0.93905 0.90729 0.87388 1.21392 1.00319 1.01664 0.94006 1.20641 0.98147 0.90621 0.98514 1.18905 0.96412 0.94657 0.90389 1.68679 1.20519 1.04976 1.26755 1.24827 0.90826 0.89793 0.95466 1.68300 1.13162 1.39800 1.02119 1.23664 0.91656 0.88454 0.95171 1.19260 1.00904 0.96513 0.96208 1.20035 1.04765 0.90809 0.99595 0.97126 0.90412 0.93370 0.99149 0.95272 0.92958 0.94950 0.90713 0.78294 0.90907 0.91249 0.83895 0.83692 0.78872 0.80592 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.14 60.06 0.55 1.18 16 2 N -0.53 -10.85 4.70 -244.37 -1.15 -12.00 16 3 C 0.19 4.84 4.72 -4.97 -0.02 4.82 16 4 C -0.51 -13.98 8.46 -34.44 -0.29 -14.27 16 5 H 0.07 1.80 7.12 -52.49 -0.37 1.43 16 6 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 7 N -0.90 -26.24 13.29 55.43 0.74 -25.51 16 8 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.03 0.43 4.60 -3.82 -0.02 0.41 16 13 C 0.12 1.51 3.20 -26.73 -0.09 1.43 16 14 H 0.11 1.50 6.34 -51.93 -0.33 1.17 16 15 O -0.54 -7.83 13.25 -40.08 -0.53 -8.36 16 16 C 0.02 0.22 4.36 37.16 0.16 0.38 16 17 O -0.30 -3.28 10.08 -24.25 -0.24 -3.53 16 18 C 0.14 1.36 6.64 -39.55 -0.26 1.09 16 19 C -0.15 -1.29 8.94 -39.75 -0.36 -1.65 16 20 C -0.06 -0.54 10.00 -39.57 -0.40 -0.94 16 21 C 0.12 1.30 6.62 -84.79 -0.56 0.74 16 22 N -0.50 -5.27 10.45 -12.57 -0.13 -5.40 16 23 C 0.28 2.54 12.22 -92.11 -1.13 1.41 16 24 N -0.52 -4.88 10.39 -14.16 -0.15 -5.02 16 25 C 0.19 1.55 11.16 -16.66 -0.19 1.36 16 26 C -0.12 -1.17 5.74 -106.84 -0.61 -1.78 16 27 C -0.13 -1.18 9.72 -39.41 -0.38 -1.56 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 30 H 0.05 0.78 6.37 -51.93 -0.33 0.45 16 31 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 32 H 0.03 0.78 7.93 -51.93 -0.41 0.36 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 35 H 0.07 1.12 7.93 -51.93 -0.41 0.70 16 36 H 0.37 4.18 9.04 45.56 0.41 4.59 16 37 H 0.07 0.61 7.63 -51.93 -0.40 0.22 16 38 H 0.07 0.57 7.63 -51.93 -0.40 0.17 16 39 H 0.14 0.94 6.21 -52.49 -0.33 0.62 16 40 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 41 H 0.19 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.18 0.82 8.06 -52.48 -0.42 0.39 16 43 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -33.50 361.90 -9.73 -43.23 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -5.01 Total: 0.75 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -3.69 Total: -5.97 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: -0.69 Total: -47.93 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.78 Total: -11.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.50 -9.73 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414121798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.103 kcal (2) G-P(sol) polarization free energy of solvation -33.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds