Wall clock time and date at job start Tue Mar 31 2020 11:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 111.00124 * 2 1 4 4 C 1.50700 * 109.46833 * 293.95755 * 3 2 1 5 5 H 1.07999 * 120.00169 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99675 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99950 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99864 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47435 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47204 * 120.00287 * 8 6 4 11 11 H 1.48502 * 109.47338 * 240.00059 * 8 6 4 12 12 C 1.46900 * 111.00108 * 123.95402 * 2 1 3 13 13 C 1.53005 * 109.46989 * 66.04665 * 12 2 1 14 14 H 1.09002 * 109.46952 * 304.99959 * 13 12 2 15 15 O 1.42900 * 109.47177 * 65.00252 * 13 12 2 16 16 C 1.52999 * 109.46826 * 184.99975 * 13 12 2 17 17 O 1.42905 * 109.47102 * 174.99762 * 16 13 12 18 18 C 1.35894 * 117.00243 * 179.97438 * 17 16 13 19 19 C 1.39828 * 119.57814 * 0.02562 * 18 17 16 20 20 C 1.36122 * 121.03245 * 179.73688 * 19 18 17 21 21 C 1.40299 * 119.65963 * 0.25871 * 20 19 18 22 22 N 1.33886 * 121.99037 * 179.97438 * 21 20 19 23 23 C 1.31119 * 120.27383 * 180.02562 * 22 21 20 24 24 N 1.32515 * 122.86215 * 0.02562 * 23 22 21 25 25 C 1.31770 * 121.62052 * 359.97438 * 24 23 22 26 26 C 1.40668 * 118.34708 * 359.97438 * 25 24 23 27 27 C 1.36680 * 119.58334 * 180.26610 * 18 17 16 28 28 H 1.09000 * 109.47555 * 296.04332 * 1 2 3 29 29 H 1.08998 * 109.47378 * 56.04464 * 1 2 3 30 30 H 1.08998 * 109.47070 * 176.04463 * 1 2 3 31 31 H 1.08998 * 109.46640 * 53.95442 * 3 2 1 32 32 H 1.08997 * 109.47130 * 173.95301 * 3 2 1 33 33 H 0.96999 * 119.99591 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47129 * 306.04754 * 12 2 1 35 35 H 1.09006 * 109.47144 * 186.04664 * 12 2 1 36 36 H 0.96699 * 113.99693 * 59.99423 * 15 13 12 37 37 H 1.09005 * 109.47440 * 55.00077 * 16 13 12 38 38 H 1.08999 * 109.47519 * 295.00152 * 16 13 12 39 39 H 1.08002 * 119.48707 * 0.02562 * 19 18 17 40 40 H 1.08004 * 120.16625 * 180.23333 * 20 19 18 41 41 H 1.07998 * 118.56779 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.82507 * 180.02562 * 25 24 23 43 43 H 1.08004 * 120.27631 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2984 5 1 1.0745 1.5112 -2.0487 6 6 2.0267 3.3495 -1.5284 7 7 2.7110 4.0022 -0.6145 8 14 1.5828 4.1868 -3.1382 9 1 0.8165 3.2438 -3.9919 10 1 0.7549 5.3877 -2.8596 11 1 2.8247 4.5944 -3.8430 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2427 0.9703 14 1 0.5531 -2.3389 0.8432 15 8 2.2956 -2.7696 -0.1800 16 6 2.0700 -3.0199 2.2130 17 8 1.6272 -4.3746 2.1085 18 6 1.9373 -5.2062 3.1375 19 6 2.6585 -4.7138 4.2296 20 6 2.9804 -5.5193 5.2787 21 6 2.5888 -6.8665 5.2653 22 7 2.8808 -7.7000 6.2716 23 6 2.4985 -8.9533 6.2239 24 7 1.8188 -9.4595 5.2051 25 6 1.4817 -8.7232 4.1656 26 6 1.8611 -7.3687 4.1553 27 6 1.5445 -6.5145 3.0897 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3444 0.1083 33 1 2.9856 4.9183 -0.7765 34 1 1.5611 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 3.2601 -2.7166 -0.1360 37 1 1.6330 -2.5624 3.1007 38 1 3.1570 -2.9978 2.2907 39 1 2.9609 -3.6771 4.2431 40 1 3.5347 -5.1233 6.1168 41 1 2.7485 -9.6013 7.0509 42 1 0.9272 -9.1489 3.3423 43 1 0.9907 -6.8861 2.2401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414121798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:08 Heat of formation + Delta-G solvation = -35.359762 kcal Electronic energy + Delta-G solvation = -25021.472262 eV Core-core repulsion = 21259.478885 eV Total energy + Delta-G solvation = -3761.993378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.39598 -40.79948 -39.21384 -37.60446 -36.80300 -35.11153 -34.62829 -32.45278 -32.00556 -30.59135 -29.15417 -27.86456 -26.25452 -25.88059 -24.66481 -23.64993 -22.79530 -21.86274 -19.99054 -19.43643 -18.64521 -18.42416 -17.62484 -17.37586 -16.85819 -16.72198 -16.25089 -16.21079 -15.95234 -15.80618 -15.20597 -15.05714 -14.99381 -14.94994 -14.44549 -14.19791 -13.94785 -13.79722 -13.30916 -13.20860 -12.83692 -12.70366 -12.56842 -12.51008 -12.39537 -12.36349 -12.04510 -11.99513 -11.67863 -11.61425 -11.38058 -10.86511 -10.62334 -10.29510 -10.26389 -9.05469 -8.97408 -8.21278 -6.30358 -0.84033 -0.37955 0.79862 1.40797 1.42120 1.55359 1.86970 1.93718 2.40818 2.99336 3.09681 3.11560 3.20641 3.25884 3.37800 3.50594 3.59311 3.69354 3.85298 3.93924 4.03235 4.15757 4.18113 4.31741 4.33856 4.52065 4.57778 4.59591 4.70137 4.72549 4.81400 4.84802 5.00268 5.08783 5.10350 5.18071 5.28328 5.31850 5.43507 5.65139 5.92347 6.04803 6.25927 6.30289 6.62496 6.85788 6.92703 7.05729 7.39379 8.89628 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.044492 B = 0.001919 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.172514 B =14583.874723 C =14955.283030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.542 5.542 3 C 0.208 3.792 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.967 3.033 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.027 3.973 13 C 0.126 3.874 14 H 0.099 0.901 15 O -0.559 6.559 16 C 0.028 3.972 17 O -0.311 6.311 18 C 0.122 3.878 19 C -0.147 4.147 20 C -0.070 4.070 21 C 0.103 3.897 22 N -0.520 5.520 23 C 0.276 3.724 24 N -0.538 5.538 25 C 0.196 3.804 26 C -0.138 4.138 27 C -0.127 4.127 28 H 0.015 0.985 29 H 0.054 0.946 30 H 0.076 0.924 31 H -0.035 1.035 32 H 0.008 0.992 33 H 0.264 0.736 34 H 0.044 0.956 35 H 0.079 0.921 36 H 0.383 0.617 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.219 0.781 42 H 0.210 0.790 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 -23.263 12.359 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.204 1.204 11 H -0.204 1.204 12 C -0.102 4.102 13 C 0.066 3.934 14 H 0.117 0.883 15 O -0.365 6.365 16 C -0.047 4.047 17 O -0.224 6.224 18 C 0.076 3.924 19 C -0.168 4.168 20 C -0.088 4.088 21 C -0.024 4.024 22 N -0.234 5.234 23 C -0.013 4.013 24 N -0.250 5.250 25 C 0.016 3.984 26 C -0.142 4.142 27 C -0.148 4.148 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.095 0.905 31 H -0.018 1.018 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.232 0.768 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.235 0.765 42 H 0.226 0.774 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.183 -23.972 12.491 27.057 hybrid contribution 0.210 2.092 -0.129 2.107 sum -0.974 -21.880 12.361 25.149 Atomic orbital electron populations 1.22263 0.87796 1.01149 0.99913 1.61885 1.08047 1.15089 1.41605 1.19402 0.93863 0.83658 0.94926 1.21511 1.34703 0.97420 1.02498 0.92145 1.25876 0.95096 0.98083 1.00582 1.70073 1.39443 1.11878 1.36000 0.85361 0.78064 0.78180 0.79174 1.18948 1.20421 1.20424 1.22719 1.01078 0.93753 0.92665 1.21770 0.98426 0.89213 0.83981 0.88280 1.86610 1.24467 1.83742 1.41662 1.23704 1.01284 0.79627 1.00099 1.86171 1.74153 1.21460 1.40650 1.18957 0.94909 0.90903 0.87628 1.21554 0.99497 1.02474 0.93264 1.20821 0.98529 0.90316 0.99178 1.19266 0.96877 0.95390 0.90878 1.68718 1.21692 1.05662 1.27317 1.25388 0.90033 0.89788 0.96060 1.68397 1.13884 1.40080 1.02670 1.24242 0.90670 0.87977 0.95492 1.19406 1.01352 0.97238 0.96190 1.20233 1.04164 0.90635 0.99764 0.96637 0.92683 0.90539 1.01756 0.97387 0.92697 0.93805 0.90294 0.76812 0.89113 0.89306 0.81997 0.82550 0.76456 0.77383 0.82100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 9.14 127.69 1.17 2.54 16 2 N -0.54 -22.14 4.70 -927.05 -4.36 -26.50 16 3 C 0.21 10.66 4.72 85.56 0.40 11.06 16 4 C -0.52 -29.26 8.46 25.60 0.22 -29.04 16 5 H 0.06 3.37 7.12 -2.91 -0.02 3.35 16 6 C 0.00 0.09 5.46 84.65 0.46 0.55 16 7 N -0.93 -55.08 13.29 21.45 0.28 -54.79 16 8 Si 0.97 43.90 29.54 68.60 2.03 45.93 16 9 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.03 0.80 4.60 86.30 0.40 1.19 16 13 C 0.13 3.06 3.20 30.60 0.10 3.16 16 14 H 0.10 2.57 6.34 -2.39 -0.02 2.56 16 15 O -0.56 -15.48 13.25 -144.35 -1.91 -17.39 16 16 C 0.03 0.49 4.36 71.98 0.31 0.80 16 17 O -0.31 -6.25 10.08 -87.72 -0.88 -7.13 16 18 C 0.12 2.17 6.64 22.29 0.15 2.32 16 19 C -0.15 -2.22 8.94 22.16 0.20 -2.02 16 20 C -0.07 -1.17 10.00 22.28 0.22 -0.94 16 21 C 0.10 2.07 6.62 40.24 0.27 2.33 16 22 N -0.52 -10.73 10.45 -193.67 -2.02 -12.75 16 23 C 0.28 4.74 12.22 180.87 2.21 6.95 16 24 N -0.54 -9.35 10.39 -198.71 -2.06 -11.41 16 25 C 0.20 2.86 11.16 85.30 0.95 3.81 16 26 C -0.14 -2.41 5.74 -21.30 -0.12 -2.53 16 27 C -0.13 -2.07 9.72 22.38 0.22 -1.86 16 28 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 2.26 6.76 -2.39 -0.02 2.25 16 30 H 0.08 2.38 6.37 -2.39 -0.02 2.36 16 31 H -0.04 -1.95 8.12 -2.39 -0.02 -1.97 16 32 H 0.01 0.44 7.93 -2.39 -0.02 0.42 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.04 1.23 8.12 -2.39 -0.02 1.21 16 35 H 0.08 2.28 7.93 -2.38 -0.02 2.26 16 36 H 0.38 8.10 9.04 -74.06 -0.67 7.43 16 37 H 0.09 1.26 7.63 -2.38 -0.02 1.24 16 38 H 0.09 1.20 7.63 -2.39 -0.02 1.18 16 39 H 0.16 1.71 6.21 -2.91 -0.02 1.69 16 40 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.22 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.21 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -72.45 361.90 -1.41 -73.86 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.37 Total: 11.87 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 7.15 Total: -1.66 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -8.16 Total: -105.47 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -2.80 Total: -24.52 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.45 -1.41 -73.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414121798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.497 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds