Wall clock time and date at job start Tue Mar 31 2020 11:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99968 * 2 1 4 4 C 1.50692 * 109.46900 * 66.04474 * 3 2 1 5 5 H 1.07999 * 120.00661 * 0.02562 * 4 3 2 6 6 C 1.37884 * 120.00024 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99726 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00106 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46689 * 90.00377 * 8 6 4 10 10 H 1.48502 * 109.46921 * 210.00147 * 8 6 4 11 11 H 1.48496 * 109.47418 * 330.00663 * 8 6 4 12 12 C 1.46903 * 110.99655 * 236.04852 * 2 1 3 13 13 C 1.52993 * 109.47312 * 293.95158 * 12 2 1 14 14 H 1.09002 * 109.47231 * 60.00217 * 13 12 2 15 15 O 1.42907 * 109.46960 * 300.00399 * 13 12 2 16 16 C 1.53002 * 109.47475 * 180.02562 * 13 12 2 17 17 O 1.42898 * 109.47155 * 184.99758 * 16 13 12 18 18 C 1.35895 * 116.99678 * 179.97438 * 17 16 13 19 19 C 1.39827 * 119.58168 * 0.02588 * 18 17 16 20 20 C 1.36109 * 121.03394 * 179.97438 * 19 18 17 21 21 C 1.40314 * 119.65785 * 0.02562 * 20 19 18 22 22 N 1.33884 * 121.97521 * 179.97438 * 21 20 19 23 23 C 1.31120 * 120.27127 * 180.02562 * 22 21 20 24 24 N 1.32522 * 122.85774 * 0.02562 * 23 22 21 25 25 C 1.31779 * 121.62228 * 0.02562 * 24 23 22 26 26 C 1.40668 * 118.34627 * 359.97438 * 25 24 23 27 27 C 1.36695 * 119.57517 * 180.02562 * 18 17 16 28 28 H 1.09001 * 109.46701 * 183.95353 * 1 2 3 29 29 H 1.08999 * 109.46808 * 303.95052 * 1 2 3 30 30 H 1.09002 * 109.46829 * 63.95445 * 1 2 3 31 31 H 1.09001 * 109.47085 * 186.05027 * 3 2 1 32 32 H 1.09003 * 109.47082 * 306.05088 * 3 2 1 33 33 H 0.96998 * 119.99836 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46796 * 173.95108 * 12 2 1 35 35 H 1.08996 * 109.47211 * 53.95272 * 12 2 1 36 36 H 0.96697 * 114.00141 * 300.00052 * 15 13 12 37 37 H 1.08994 * 109.46742 * 65.00123 * 16 13 12 38 38 H 1.08998 * 109.46959 * 305.00267 * 16 13 12 39 39 H 1.07997 * 119.48001 * 359.97438 * 19 18 17 40 40 H 1.07994 * 120.17506 * 180.02562 * 20 19 18 41 41 H 1.07996 * 118.57364 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.82451 * 180.02562 * 25 24 23 43 43 H 1.07989 * 120.27764 * 359.72910 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0277 3.3491 1.5289 7 7 2.7129 4.0015 0.6154 8 14 1.5838 4.1865 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4320 5.6462 2.9120 11 1 0.3060 3.6294 3.6506 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2425 -0.9705 14 1 0.5472 -2.3475 -0.9324 15 8 2.2010 -2.7391 0.2425 16 6 2.1803 -3.0404 -2.1550 17 8 1.7421 -4.3972 -2.0594 18 6 2.1444 -5.2461 -3.0413 19 6 2.9511 -4.7686 -4.0789 20 6 3.3714 -5.5929 -5.0771 21 6 2.9910 -6.9435 -5.0687 22 7 3.3773 -7.7948 -6.0271 23 6 3.0017 -9.0504 -5.9865 24 7 2.2374 -9.5414 -5.0217 25 6 1.8030 -8.7866 -4.0327 26 6 2.1707 -7.4289 -4.0174 27 6 1.7554 -6.5559 -3.0021 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3633 0.5739 0.8525 30 1 -0.3633 0.4512 -0.9233 31 1 3.0798 1.3444 -0.1083 32 1 1.5611 1.9274 -0.8309 33 1 2.9874 4.9176 0.7774 34 1 3.0797 -0.6610 -1.1757 35 1 1.5611 -0.3872 -2.0628 36 1 3.1653 -2.6770 0.2786 37 1 3.2696 -3.0086 -2.1410 38 1 1.8160 -2.6057 -3.0858 39 1 3.2452 -3.7295 -4.0883 40 1 3.9945 -5.2095 -5.8715 41 1 3.3289 -9.7131 -6.7740 42 1 1.1810 -9.2004 -3.2528 43 1 1.1359 -6.9159 -2.1942 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414121810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:11 Heat of formation + Delta-G solvation = -11.185350 kcal Electronic energy + Delta-G solvation = -25024.490327 eV Core-core repulsion = 21263.545231 eV Total energy + Delta-G solvation = -3760.945097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73422 -40.03021 -38.03845 -36.70967 -35.46171 -34.43838 -32.59696 -31.79204 -31.01656 -29.68308 -27.36088 -26.57187 -25.49962 -24.61734 -23.67362 -22.87140 -21.50956 -20.39420 -19.25004 -18.76052 -17.82685 -16.71108 -16.61028 -16.38009 -15.95964 -15.48888 -15.38267 -15.03504 -14.79562 -14.46390 -14.42848 -14.19319 -13.79495 -13.68127 -13.53790 -13.27284 -12.73700 -12.46414 -11.99290 -11.92266 -11.69819 -11.47697 -11.36078 -11.19970 -10.99110 -10.94606 -10.85539 -10.69440 -10.39297 -10.10179 -9.78266 -9.61893 -9.60515 -9.23491 -8.48598 -8.35849 -7.32148 -6.08125 -4.09284 -0.20261 0.30513 1.45994 2.53100 2.73176 3.29716 3.35653 3.39608 3.66608 3.71895 3.79581 3.97121 4.15368 4.32144 4.35903 4.44565 4.55125 4.67761 4.76201 4.82480 4.97526 5.12783 5.17189 5.25159 5.28713 5.30178 5.43702 5.44489 5.47703 5.75685 5.88024 5.91790 6.06350 6.07649 6.14727 6.26011 6.58730 6.70152 6.96973 7.17494 7.23568 7.71762 7.72891 7.84678 8.00647 8.10395 8.46486 8.98579 9.55234 11.02810 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.043996 B = 0.001922 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.272110 B =14564.037117 C =14942.312278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.528 5.528 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.106 0.894 15 O -0.536 6.536 16 C 0.022 3.978 17 O -0.296 6.296 18 C 0.138 3.862 19 C -0.152 4.152 20 C -0.061 4.061 21 C 0.124 3.876 22 N -0.496 5.496 23 C 0.280 3.720 24 N -0.521 5.521 25 C 0.191 3.809 26 C -0.124 4.124 27 C -0.131 4.131 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.010 0.990 31 H 0.029 0.971 32 H -0.009 1.009 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.371 0.629 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.195 0.805 42 H 0.177 0.823 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 -22.305 -12.200 25.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.252 5.252 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.103 4.103 13 C 0.056 3.944 14 H 0.124 0.876 15 O -0.340 6.340 16 C -0.053 4.053 17 O -0.208 6.208 18 C 0.092 3.908 19 C -0.174 4.174 20 C -0.079 4.079 21 C -0.004 4.004 22 N -0.209 5.209 23 C -0.009 4.009 24 N -0.234 5.234 25 C 0.011 3.989 26 C -0.129 4.129 27 C -0.152 4.152 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.218 0.782 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.161 0.839 40 H 0.163 0.837 41 H 0.211 0.789 42 H 0.194 0.806 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.126 -23.003 -12.339 26.104 hybrid contribution 0.066 1.863 0.255 1.881 sum -0.060 -21.140 -12.085 24.351 Atomic orbital electron populations 1.22285 0.88729 0.99767 1.00629 1.62010 1.07076 1.17557 1.38581 1.19760 0.95292 0.81326 0.96816 1.21154 1.34880 0.96889 1.01635 0.91714 1.25000 0.95276 0.97342 0.97074 1.69953 1.38414 1.11513 1.34067 0.86469 0.78926 0.78354 0.83498 1.20588 1.21338 1.19815 1.22624 1.00871 0.92703 0.94086 1.21950 0.99418 0.90791 0.82227 0.87608 1.86643 1.25188 1.84742 1.37418 1.23845 1.00059 0.79916 1.01526 1.86228 1.70082 1.20247 1.44281 1.18820 0.93370 0.90588 0.88055 1.21388 0.99521 1.01639 0.94829 1.20641 0.98429 0.90461 0.98389 1.18908 0.95658 0.94596 0.91206 1.68679 1.22425 1.04501 1.25319 1.24830 0.90848 0.90020 0.95219 1.68305 1.11925 1.39865 1.03290 1.23665 0.92513 0.88309 0.94462 1.19259 1.00281 0.96445 0.96895 1.20036 1.04402 0.90604 1.00172 0.93349 0.90455 0.97170 0.95300 0.99163 0.92906 0.90784 0.94919 0.78225 0.91232 0.90920 0.83889 0.83692 0.78872 0.80595 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.14 60.07 0.55 1.20 16 2 N -0.53 -10.81 4.62 -244.37 -1.13 -11.94 16 3 C 0.19 4.84 4.72 -4.98 -0.02 4.82 16 4 C -0.51 -13.99 8.46 -34.44 -0.29 -14.28 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.03 0.41 4.62 -3.83 -0.02 0.40 16 13 C 0.12 1.52 3.12 -26.73 -0.08 1.43 16 14 H 0.11 1.46 6.55 -51.93 -0.34 1.12 16 15 O -0.54 -7.85 13.17 -40.10 -0.53 -8.38 16 16 C 0.02 0.22 4.36 37.16 0.16 0.38 16 17 O -0.30 -3.28 10.08 -24.28 -0.24 -3.53 16 18 C 0.14 1.36 6.64 -39.55 -0.26 1.09 16 19 C -0.15 -1.29 8.94 -39.75 -0.36 -1.65 16 20 C -0.06 -0.54 10.00 -39.57 -0.40 -0.94 16 21 C 0.12 1.30 6.62 -84.79 -0.56 0.74 16 22 N -0.50 -5.27 10.45 -12.56 -0.13 -5.41 16 23 C 0.28 2.54 12.23 -92.10 -1.13 1.41 16 24 N -0.52 -4.88 10.39 -14.16 -0.15 -5.03 16 25 C 0.19 1.55 11.16 -16.66 -0.19 1.37 16 26 C -0.12 -1.17 5.74 -106.84 -0.61 -1.78 16 27 C -0.13 -1.18 9.72 -39.40 -0.38 -1.56 16 28 H 0.05 0.79 6.47 -51.93 -0.34 0.46 16 29 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.03 0.77 7.93 -51.93 -0.41 0.35 16 32 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 35 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 36 H 0.37 4.28 9.04 45.56 0.41 4.69 16 37 H 0.07 0.58 7.63 -51.93 -0.40 0.18 16 38 H 0.07 0.61 7.63 -51.93 -0.40 0.21 16 39 H 0.14 0.95 6.21 -52.49 -0.33 0.62 16 40 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -33.38 361.99 -9.72 -43.10 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.02 Total: 0.81 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.69 Total: -5.95 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.67 Total: -47.87 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.77 Total: -11.91 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.38 -9.72 -43.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414121810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.911 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds