Wall clock time and date at job start Tue Mar 31 2020 11:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99968 * 2 1 4 4 C 1.50692 * 109.46900 * 66.04474 * 3 2 1 5 5 H 1.07999 * 120.00661 * 0.02562 * 4 3 2 6 6 C 1.37884 * 120.00024 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99726 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00106 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46689 * 90.00377 * 8 6 4 10 10 H 1.48502 * 109.46921 * 210.00147 * 8 6 4 11 11 H 1.48496 * 109.47418 * 330.00663 * 8 6 4 12 12 C 1.46903 * 110.99655 * 236.04852 * 2 1 3 13 13 C 1.52993 * 109.47312 * 293.95158 * 12 2 1 14 14 H 1.09002 * 109.47231 * 60.00217 * 13 12 2 15 15 O 1.42907 * 109.46960 * 300.00399 * 13 12 2 16 16 C 1.53002 * 109.47475 * 180.02562 * 13 12 2 17 17 O 1.42898 * 109.47155 * 184.99758 * 16 13 12 18 18 C 1.35895 * 116.99678 * 179.97438 * 17 16 13 19 19 C 1.39827 * 119.58168 * 0.02588 * 18 17 16 20 20 C 1.36109 * 121.03394 * 179.97438 * 19 18 17 21 21 C 1.40314 * 119.65785 * 0.02562 * 20 19 18 22 22 N 1.33884 * 121.97521 * 179.97438 * 21 20 19 23 23 C 1.31120 * 120.27127 * 180.02562 * 22 21 20 24 24 N 1.32522 * 122.85774 * 0.02562 * 23 22 21 25 25 C 1.31779 * 121.62228 * 0.02562 * 24 23 22 26 26 C 1.40668 * 118.34627 * 359.97438 * 25 24 23 27 27 C 1.36695 * 119.57517 * 180.02562 * 18 17 16 28 28 H 1.09001 * 109.46701 * 183.95353 * 1 2 3 29 29 H 1.08999 * 109.46808 * 303.95052 * 1 2 3 30 30 H 1.09002 * 109.46829 * 63.95445 * 1 2 3 31 31 H 1.09001 * 109.47085 * 186.05027 * 3 2 1 32 32 H 1.09003 * 109.47082 * 306.05088 * 3 2 1 33 33 H 0.96998 * 119.99836 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46796 * 173.95108 * 12 2 1 35 35 H 1.08996 * 109.47211 * 53.95272 * 12 2 1 36 36 H 0.96697 * 114.00141 * 300.00052 * 15 13 12 37 37 H 1.08994 * 109.46742 * 65.00123 * 16 13 12 38 38 H 1.08998 * 109.46959 * 305.00267 * 16 13 12 39 39 H 1.07997 * 119.48001 * 359.97438 * 19 18 17 40 40 H 1.07994 * 120.17506 * 180.02562 * 20 19 18 41 41 H 1.07996 * 118.57364 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.82451 * 180.02562 * 25 24 23 43 43 H 1.07989 * 120.27764 * 359.72910 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0747 1.5112 2.0488 6 6 2.0277 3.3491 1.5289 7 7 2.7129 4.0015 0.6154 8 14 1.5838 4.1865 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4320 5.6462 2.9120 11 1 0.3060 3.6294 3.6506 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2425 -0.9705 14 1 0.5472 -2.3475 -0.9324 15 8 2.2010 -2.7391 0.2425 16 6 2.1803 -3.0404 -2.1550 17 8 1.7421 -4.3972 -2.0594 18 6 2.1444 -5.2461 -3.0413 19 6 2.9511 -4.7686 -4.0789 20 6 3.3714 -5.5929 -5.0771 21 6 2.9910 -6.9435 -5.0687 22 7 3.3773 -7.7948 -6.0271 23 6 3.0017 -9.0504 -5.9865 24 7 2.2374 -9.5414 -5.0217 25 6 1.8030 -8.7866 -4.0327 26 6 2.1707 -7.4289 -4.0174 27 6 1.7554 -6.5559 -3.0021 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3633 0.5739 0.8525 30 1 -0.3633 0.4512 -0.9233 31 1 3.0798 1.3444 -0.1083 32 1 1.5611 1.9274 -0.8309 33 1 2.9874 4.9176 0.7774 34 1 3.0797 -0.6610 -1.1757 35 1 1.5611 -0.3872 -2.0628 36 1 3.1653 -2.6770 0.2786 37 1 3.2696 -3.0086 -2.1410 38 1 1.8160 -2.6057 -3.0858 39 1 3.2452 -3.7295 -4.0883 40 1 3.9945 -5.2095 -5.8715 41 1 3.3289 -9.7131 -6.7740 42 1 1.1810 -9.2004 -3.2528 43 1 1.1359 -6.9159 -2.1942 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414121810.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:11 Heat of formation + Delta-G solvation = -35.215700 kcal Electronic energy + Delta-G solvation = -25025.532361 eV Core-core repulsion = 21263.545231 eV Total energy + Delta-G solvation = -3761.987131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39459 -40.79638 -39.20916 -37.60015 -36.78011 -35.11044 -34.61864 -32.45281 -32.00696 -30.58998 -29.15724 -27.84719 -26.25298 -25.87932 -24.66374 -23.64906 -22.79420 -21.84311 -19.99038 -19.43546 -18.64302 -18.41867 -17.61295 -17.37145 -16.85646 -16.71980 -16.25578 -16.20849 -15.93138 -15.80088 -15.19609 -15.07070 -14.99150 -14.95229 -14.44481 -14.18652 -13.94680 -13.78639 -13.31392 -13.19499 -12.85482 -12.71297 -12.54432 -12.49790 -12.39509 -12.35739 -12.04448 -11.99022 -11.67524 -11.61085 -11.39289 -10.85760 -10.61216 -10.29482 -10.26380 -9.05315 -8.97251 -8.20829 -6.29940 -0.83964 -0.37889 0.79890 1.41932 1.42819 1.53896 1.87035 1.93887 2.41002 2.99370 3.09765 3.11908 3.20676 3.25936 3.37872 3.50699 3.61073 3.69506 3.84810 3.94910 4.03485 4.16012 4.18435 4.31908 4.34154 4.52685 4.57831 4.59669 4.70813 4.73024 4.81510 4.84919 5.00723 5.08698 5.10159 5.18399 5.28405 5.32043 5.43561 5.65160 5.92392 6.05051 6.26092 6.30645 6.62696 6.85966 6.93334 7.05749 7.39670 8.89831 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.043996 B = 0.001922 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.272110 B =14564.037117 C =14942.312278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.540 5.540 3 C 0.208 3.792 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.967 3.033 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.026 3.974 13 C 0.127 3.873 14 H 0.099 0.901 15 O -0.557 6.557 16 C 0.028 3.972 17 O -0.311 6.311 18 C 0.122 3.878 19 C -0.147 4.147 20 C -0.070 4.070 21 C 0.103 3.897 22 N -0.520 5.520 23 C 0.276 3.724 24 N -0.538 5.538 25 C 0.196 3.804 26 C -0.138 4.138 27 C -0.127 4.127 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.014 0.986 31 H 0.008 0.992 32 H -0.036 1.036 33 H 0.264 0.736 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.383 0.617 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.219 0.781 42 H 0.210 0.790 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 -23.386 -11.997 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.264 5.264 3 C 0.082 3.918 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.190 1.190 12 C -0.103 4.103 13 C 0.067 3.933 14 H 0.117 0.883 15 O -0.363 6.363 16 C -0.047 4.047 17 O -0.224 6.224 18 C 0.076 3.924 19 C -0.168 4.168 20 C -0.088 4.088 21 C -0.024 4.024 22 N -0.234 5.234 23 C -0.013 4.013 24 N -0.250 5.250 25 C 0.016 3.984 26 C -0.142 4.142 27 C -0.148 4.148 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.026 0.974 32 H -0.018 1.018 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.232 0.768 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.235 0.765 42 H 0.226 0.774 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.506 -24.106 -12.145 26.998 hybrid contribution 0.177 2.095 0.150 2.108 sum -0.329 -22.011 -11.995 25.070 Atomic orbital electron populations 1.22249 0.87823 1.01109 0.99823 1.61884 1.08019 1.15024 1.41511 1.19401 0.93863 0.83681 0.94902 1.21477 1.34769 0.97451 1.02489 0.92149 1.25876 0.95101 0.98075 1.00563 1.70065 1.39381 1.11913 1.36007 0.85414 0.78915 0.77263 0.79215 1.19933 1.20781 1.19045 1.22712 1.01079 0.93806 0.92690 1.21754 0.99124 0.89333 0.83129 0.88308 1.86601 1.26471 1.84787 1.38491 1.23699 1.01032 0.79468 1.00515 1.86170 1.70646 1.20599 1.45003 1.18961 0.94316 0.90743 0.88373 1.21550 0.98714 1.02458 0.94069 1.20820 0.98858 0.90152 0.99015 1.19268 0.96150 0.95321 0.91678 1.68718 1.23531 1.05177 1.25963 1.25389 0.90197 0.90042 0.95645 1.68402 1.12606 1.40147 1.03879 1.24243 0.91758 0.87820 0.94562 1.19405 1.00655 0.97176 0.96945 1.20234 1.03925 0.90421 1.00218 0.90597 0.92744 0.96718 0.97370 1.01814 0.92704 0.90296 0.93873 0.76847 0.89375 0.89082 0.82002 0.82557 0.76456 0.77382 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 9.14 127.69 1.17 2.59 16 2 N -0.54 -22.02 4.62 -927.04 -4.28 -26.30 16 3 C 0.21 10.65 4.72 85.55 0.40 11.05 16 4 C -0.52 -29.25 8.46 25.60 0.22 -29.03 16 5 H 0.06 3.35 7.12 -2.91 -0.02 3.33 16 6 C 0.00 0.11 5.46 84.66 0.46 0.57 16 7 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 8 Si 0.97 43.87 29.54 68.60 2.03 45.89 16 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 12 C 0.03 0.77 4.62 86.30 0.40 1.17 16 13 C 0.13 3.07 3.12 30.59 0.10 3.16 16 14 H 0.10 2.53 6.55 -2.39 -0.02 2.52 16 15 O -0.56 -15.50 13.17 -144.32 -1.90 -17.40 16 16 C 0.03 0.49 4.36 71.98 0.31 0.80 16 17 O -0.31 -6.24 10.08 -87.71 -0.88 -7.13 16 18 C 0.12 2.17 6.64 22.29 0.15 2.32 16 19 C -0.15 -2.23 8.94 22.16 0.20 -2.03 16 20 C -0.07 -1.17 10.00 22.28 0.22 -0.95 16 21 C 0.10 2.07 6.62 40.25 0.27 2.34 16 22 N -0.52 -10.75 10.45 -193.66 -2.02 -12.77 16 23 C 0.28 4.75 12.23 180.87 2.21 6.96 16 24 N -0.54 -9.36 10.39 -198.70 -2.06 -11.42 16 25 C 0.20 2.86 11.16 85.29 0.95 3.81 16 26 C -0.14 -2.41 5.74 -21.30 -0.12 -2.53 16 27 C -0.13 -2.08 9.72 22.38 0.22 -1.86 16 28 H 0.08 2.39 6.47 -2.39 -0.02 2.37 16 29 H 0.05 2.25 6.76 -2.39 -0.02 2.23 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.01 0.45 7.93 -2.39 -0.02 0.43 16 32 H -0.04 -1.98 8.12 -2.39 -0.02 -2.00 16 33 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.08 2.27 7.93 -2.39 -0.02 2.25 16 35 H 0.04 1.22 8.12 -2.39 -0.02 1.20 16 36 H 0.38 8.29 9.04 -74.06 -0.67 7.62 16 37 H 0.09 1.21 7.63 -2.39 -0.02 1.19 16 38 H 0.09 1.25 7.63 -2.39 -0.02 1.23 16 39 H 0.16 1.72 6.21 -2.91 -0.02 1.70 16 40 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 41 H 0.22 2.26 8.06 -2.91 -0.02 2.23 16 42 H 0.21 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.16 2.02 8.06 -2.92 -0.02 2.00 16 Total: -1.00 -72.14 361.99 -1.33 -73.46 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.37 Total: 12.06 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 7.15 Total: -1.62 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -8.09 Total: -105.27 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -2.78 Total: -24.53 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.14 -1.33 -73.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414121810.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.247 kcal (2) G-P(sol) polarization free energy of solvation -72.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds