Wall clock time and date at job start Tue Mar 31 2020 11:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99890 * 2 1 4 4 C 1.50708 * 109.46710 * 293.94761 * 3 2 1 5 5 H 1.07994 * 120.00115 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99846 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99581 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00157 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.46982 * 89.99958 * 8 6 4 10 10 H 1.48497 * 109.47264 * 210.00041 * 8 6 4 11 11 H 1.48502 * 109.47379 * 330.00130 * 8 6 4 12 12 C 1.46903 * 110.99821 * 123.94453 * 2 1 3 13 13 C 1.52998 * 109.46825 * 66.05247 * 12 2 1 14 14 H 1.09003 * 109.47500 * 304.99730 * 13 12 2 15 15 O 1.42902 * 109.47451 * 64.99547 * 13 12 2 16 16 C 1.52999 * 109.47347 * 184.99720 * 13 12 2 17 17 O 1.42901 * 109.47642 * 174.99828 * 16 13 12 18 18 C 1.35832 * 117.00285 * 180.02562 * 17 16 13 19 19 C 1.39942 * 119.57767 * 0.02562 * 18 17 16 20 20 C 1.35930 * 120.90537 * 180.02562 * 19 18 17 21 21 C 1.40664 * 119.78377 * 0.27728 * 20 19 18 22 22 N 1.33697 * 121.03549 * 180.31946 * 21 20 19 23 23 C 1.31363 * 119.73893 * 179.70523 * 22 21 20 24 24 C 1.39602 * 120.72358 * 359.70752 * 23 22 21 25 25 N 1.31374 * 120.71372 * 0.02562 * 24 23 22 26 26 C 1.33797 * 119.69581 * 359.97438 * 25 24 23 27 27 C 1.36564 * 119.57912 * 180.02562 * 18 17 16 28 28 H 1.08993 * 109.47429 * 296.05004 * 1 2 3 29 29 H 1.08999 * 109.47020 * 56.05185 * 1 2 3 30 30 H 1.09005 * 109.46984 * 176.05143 * 1 2 3 31 31 H 1.08998 * 109.47686 * 53.94769 * 3 2 1 32 32 H 1.08998 * 109.47297 * 173.95400 * 3 2 1 33 33 H 0.97004 * 119.99352 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47788 * 306.05103 * 12 2 1 35 35 H 1.09003 * 109.46844 * 186.04836 * 12 2 1 36 36 H 0.96701 * 113.99327 * 60.00457 * 15 13 12 37 37 H 1.09005 * 109.47034 * 55.00095 * 16 13 12 38 38 H 1.09000 * 109.47012 * 295.00220 * 16 13 12 39 39 H 1.07996 * 119.54422 * 359.97170 * 19 18 17 40 40 H 1.08002 * 120.10496 * 179.97438 * 20 19 18 41 41 H 1.07995 * 119.63472 * 179.68663 * 23 22 21 42 42 H 1.08003 * 119.64456 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.15275 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2986 5 1 1.0740 1.5113 -2.0486 6 6 2.0277 3.3490 -1.5291 7 7 1.7144 3.9387 -2.6622 8 14 3.0019 4.2754 -0.2322 9 1 4.4541 4.0618 -0.4576 10 1 2.6947 5.7253 -0.3241 11 1 2.6315 3.7755 1.1162 12 6 1.9954 -0.7658 1.1377 13 6 1.6315 -2.2425 0.9706 14 1 0.5532 -2.3389 0.8435 15 8 2.2956 -2.7695 -0.1797 16 6 2.0699 -3.0197 2.2134 17 8 1.6273 -4.3744 2.1089 18 6 1.9363 -5.2053 3.1381 19 6 2.6571 -4.7121 4.2315 20 6 2.9812 -5.5198 5.2757 21 6 2.5943 -6.8720 5.2594 22 7 2.8942 -7.6871 6.2758 23 6 2.5152 -8.9443 6.2366 24 6 1.7962 -9.4388 5.1470 25 7 1.4845 -8.6571 4.1382 26 6 1.8592 -7.3727 4.1545 27 6 1.5395 -6.5112 3.0926 28 1 -0.3634 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 1.5610 1.9275 0.8308 32 1 3.0797 1.3445 0.1082 33 1 1.9896 4.8546 -2.8245 34 1 1.5611 -0.3871 2.0629 35 1 3.0797 -0.6609 1.1758 36 1 3.2602 -2.7166 -0.1355 37 1 1.6329 -2.5621 3.1010 38 1 3.1570 -2.9975 2.2910 39 1 2.9607 -3.6758 4.2455 40 1 3.5383 -5.1257 6.1128 41 1 2.7628 -9.6025 7.0562 42 1 1.4937 -10.4755 5.1327 43 1 0.9833 -6.8799 2.2434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414139619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:14 Heat of formation + Delta-G solvation = -3.825726 kcal Electronic energy + Delta-G solvation = -25082.314921 eV Core-core repulsion = 21321.688961 eV Total energy + Delta-G solvation = -3760.625959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80108 -40.07102 -38.08172 -36.55769 -35.56941 -35.11280 -32.54054 -31.39248 -30.97095 -29.95879 -27.95198 -26.65850 -25.62526 -24.65724 -23.65603 -22.75540 -21.39265 -20.34397 -19.40978 -18.67818 -17.69584 -16.98069 -16.80452 -16.72353 -16.26828 -15.52015 -15.25873 -15.06886 -14.89988 -14.62204 -14.37741 -14.23968 -13.81485 -13.68591 -13.51935 -12.88620 -12.76466 -12.42600 -12.22535 -12.12147 -12.02389 -11.93821 -11.77131 -11.30698 -11.09896 -11.04896 -10.88845 -10.60000 -10.39672 -10.12727 -9.76151 -9.49611 -9.31817 -9.30761 -8.61344 -8.51907 -7.45149 -6.08776 -4.06549 -0.19033 0.17252 1.54264 2.37147 2.63634 3.23532 3.31260 3.31539 3.62359 3.66104 3.81647 3.89044 4.19907 4.34174 4.37216 4.44042 4.46893 4.54887 4.65863 4.76841 4.90438 5.00165 5.06036 5.16466 5.23259 5.24530 5.35120 5.45184 5.52507 5.73736 5.74660 5.76755 5.97411 6.05469 6.10138 6.16534 6.60616 6.78325 6.85099 6.90758 6.96335 7.33911 7.50639 7.79385 7.79699 7.96941 8.60425 9.00801 9.52045 11.04292 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.002036 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.550274 B =13748.035685 C =14263.269678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.510 4.510 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.898 5.898 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.116 3.884 14 H 0.110 0.890 15 O -0.535 6.535 16 C 0.022 3.978 17 O -0.293 6.293 18 C 0.158 3.842 19 C -0.170 4.170 20 C -0.042 4.042 21 C 0.044 3.956 22 N -0.416 5.416 23 C 0.056 3.944 24 C 0.086 3.914 25 N -0.432 5.432 26 C 0.119 3.881 27 C -0.140 4.140 28 H 0.011 0.989 29 H 0.083 0.917 30 H 0.051 0.949 31 H -0.012 1.012 32 H 0.023 0.977 33 H 0.264 0.736 34 H 0.034 0.966 35 H 0.075 0.925 36 H 0.370 0.630 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.174 0.826 42 H 0.175 0.825 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -23.737 19.672 30.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.243 5.243 3 C 0.036 3.964 4 C -0.548 4.548 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.055 3.945 14 H 0.127 0.873 15 O -0.339 6.339 16 C -0.054 4.054 17 O -0.205 6.205 18 C 0.110 3.890 19 C -0.191 4.191 20 C -0.061 4.061 21 C -0.081 4.081 22 N -0.130 5.130 23 C -0.119 4.119 24 C -0.089 4.089 25 N -0.146 5.146 26 C -0.005 4.005 27 C -0.160 4.160 28 H 0.030 0.970 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.006 0.994 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.217 0.783 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.191 0.809 42 H 0.192 0.808 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.826 -23.683 18.643 30.196 hybrid contribution 0.989 1.219 1.882 2.451 sum 2.815 -22.464 20.525 30.559 Atomic orbital electron populations 1.22334 0.88037 1.00225 1.00997 1.61834 1.07559 1.16225 1.38697 1.20209 0.94819 0.83866 0.97467 1.21021 1.35757 0.97206 1.00834 0.89979 1.24909 0.95830 0.97352 0.95295 1.69894 1.46727 1.13303 1.23799 0.86865 0.80893 0.79388 0.82584 1.20138 1.21153 1.19425 1.22683 1.00855 0.93051 0.93906 1.21960 0.99144 0.90406 0.82964 0.87269 1.86683 1.23104 1.83654 1.40438 1.23857 1.00059 0.80050 1.01405 1.86225 1.73451 1.21074 1.39753 1.18714 0.92816 0.90415 0.87078 1.21329 1.01659 1.01760 0.94319 1.20651 0.96961 0.90323 0.98204 1.19522 1.00544 0.95519 0.92469 1.68588 1.15817 1.04148 1.24413 1.23957 0.95976 0.92750 0.99199 1.24080 0.94071 1.00966 0.89796 1.68717 1.17232 1.03058 1.25635 1.19120 0.95809 0.91390 0.94142 1.19767 1.05953 0.90265 1.00039 0.97042 0.89823 0.93008 0.99418 0.95890 0.92617 0.94828 0.90688 0.78299 0.90824 0.91172 0.83820 0.83719 0.80926 0.80804 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.14 60.06 0.55 1.15 16 2 N -0.52 -10.40 4.70 -244.37 -1.15 -11.54 16 3 C 0.16 3.81 3.79 -4.97 -0.02 3.79 16 4 C -0.51 -14.30 9.01 -34.44 -0.31 -14.61 16 5 H 0.08 2.53 7.37 -52.49 -0.39 2.14 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 7 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 8 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 12 C 0.02 0.36 4.60 -3.82 -0.02 0.34 16 13 C 0.12 1.49 3.20 -26.73 -0.09 1.40 16 14 H 0.11 1.51 6.34 -51.93 -0.33 1.18 16 15 O -0.54 -7.83 13.25 -40.08 -0.53 -8.37 16 16 C 0.02 0.22 4.36 37.16 0.16 0.38 16 17 O -0.29 -3.40 10.07 -24.06 -0.24 -3.64 16 18 C 0.16 1.68 6.64 -39.55 -0.26 1.41 16 19 C -0.17 -1.46 8.94 -39.77 -0.36 -1.82 16 20 C -0.04 -0.37 9.98 -39.49 -0.39 -0.76 16 21 C 0.04 0.47 6.59 -84.76 -0.56 -0.09 16 22 N -0.42 -4.07 10.46 -10.79 -0.11 -4.18 16 23 C 0.06 0.38 11.21 -17.24 -0.19 0.19 16 24 C 0.09 0.60 11.21 -17.24 -0.19 0.41 16 25 N -0.43 -4.55 10.47 -10.82 -0.11 -4.66 16 26 C 0.12 1.34 6.59 -84.81 -0.56 0.79 16 27 C -0.14 -1.57 9.89 -39.36 -0.39 -1.96 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 30 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 31 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 32 H 0.02 0.53 7.36 -51.93 -0.38 0.15 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.07 1.03 7.93 -51.93 -0.41 0.61 16 36 H 0.37 4.13 9.05 45.56 0.41 4.54 16 37 H 0.07 0.59 7.63 -51.93 -0.40 0.20 16 38 H 0.07 0.55 7.64 -51.93 -0.40 0.15 16 39 H 0.14 0.91 6.22 -52.49 -0.33 0.58 16 40 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.17 0.48 8.06 -52.49 -0.42 0.05 16 42 H 0.17 0.50 8.06 -52.48 -0.42 0.08 16 43 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -34.98 358.38 -8.34 -43.32 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.97 Total: 1.35 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -2.72 Total: -7.54 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.60 Total: -46.89 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.77 Total: -12.01 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.98 -8.34 -43.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414139619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.491 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds