Wall clock time and date at job start Tue Mar 31 2020 11:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 110.99890 * 2 1 4 4 C 1.50708 * 109.46710 * 293.94761 * 3 2 1 5 5 H 1.07994 * 120.00115 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99846 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99581 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00157 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.46982 * 89.99958 * 8 6 4 10 10 H 1.48497 * 109.47264 * 210.00041 * 8 6 4 11 11 H 1.48502 * 109.47379 * 330.00130 * 8 6 4 12 12 C 1.46903 * 110.99821 * 123.94453 * 2 1 3 13 13 C 1.52998 * 109.46825 * 66.05247 * 12 2 1 14 14 H 1.09003 * 109.47500 * 304.99730 * 13 12 2 15 15 O 1.42902 * 109.47451 * 64.99547 * 13 12 2 16 16 C 1.52999 * 109.47347 * 184.99720 * 13 12 2 17 17 O 1.42901 * 109.47642 * 174.99828 * 16 13 12 18 18 C 1.35832 * 117.00285 * 180.02562 * 17 16 13 19 19 C 1.39942 * 119.57767 * 0.02562 * 18 17 16 20 20 C 1.35930 * 120.90537 * 180.02562 * 19 18 17 21 21 C 1.40664 * 119.78377 * 0.27728 * 20 19 18 22 22 N 1.33697 * 121.03549 * 180.31946 * 21 20 19 23 23 C 1.31363 * 119.73893 * 179.70523 * 22 21 20 24 24 C 1.39602 * 120.72358 * 359.70752 * 23 22 21 25 25 N 1.31374 * 120.71372 * 0.02562 * 24 23 22 26 26 C 1.33797 * 119.69581 * 359.97438 * 25 24 23 27 27 C 1.36564 * 119.57912 * 180.02562 * 18 17 16 28 28 H 1.08993 * 109.47429 * 296.05004 * 1 2 3 29 29 H 1.08999 * 109.47020 * 56.05185 * 1 2 3 30 30 H 1.09005 * 109.46984 * 176.05143 * 1 2 3 31 31 H 1.08998 * 109.47686 * 53.94769 * 3 2 1 32 32 H 1.08998 * 109.47297 * 173.95400 * 3 2 1 33 33 H 0.97004 * 119.99352 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47788 * 306.05103 * 12 2 1 35 35 H 1.09003 * 109.46844 * 186.04836 * 12 2 1 36 36 H 0.96701 * 113.99327 * 60.00457 * 15 13 12 37 37 H 1.09005 * 109.47034 * 55.00095 * 16 13 12 38 38 H 1.09000 * 109.47012 * 295.00220 * 16 13 12 39 39 H 1.07996 * 119.54422 * 359.97170 * 19 18 17 40 40 H 1.08002 * 120.10496 * 179.97438 * 20 19 18 41 41 H 1.07995 * 119.63472 * 179.68663 * 23 22 21 42 42 H 1.08003 * 119.64456 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.15275 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 -1.2986 5 1 1.0740 1.5113 -2.0486 6 6 2.0277 3.3490 -1.5291 7 7 1.7144 3.9387 -2.6622 8 14 3.0019 4.2754 -0.2322 9 1 4.4541 4.0618 -0.4576 10 1 2.6947 5.7253 -0.3241 11 1 2.6315 3.7755 1.1162 12 6 1.9954 -0.7658 1.1377 13 6 1.6315 -2.2425 0.9706 14 1 0.5532 -2.3389 0.8435 15 8 2.2956 -2.7695 -0.1797 16 6 2.0699 -3.0197 2.2134 17 8 1.6273 -4.3744 2.1089 18 6 1.9363 -5.2053 3.1381 19 6 2.6571 -4.7121 4.2315 20 6 2.9812 -5.5198 5.2757 21 6 2.5943 -6.8720 5.2594 22 7 2.8942 -7.6871 6.2758 23 6 2.5152 -8.9443 6.2366 24 6 1.7962 -9.4388 5.1470 25 7 1.4845 -8.6571 4.1382 26 6 1.8592 -7.3727 4.1545 27 6 1.5395 -6.5112 3.0926 28 1 -0.3634 0.4513 0.9232 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 1.5610 1.9275 0.8308 32 1 3.0797 1.3445 0.1082 33 1 1.9896 4.8546 -2.8245 34 1 1.5611 -0.3871 2.0629 35 1 3.0797 -0.6609 1.1758 36 1 3.2602 -2.7166 -0.1355 37 1 1.6329 -2.5621 3.1010 38 1 3.1570 -2.9975 2.2910 39 1 2.9607 -3.6758 4.2455 40 1 3.5383 -5.1257 6.1128 41 1 2.7628 -9.6025 7.0562 42 1 1.4937 -10.4755 5.1327 43 1 0.9833 -6.8799 2.2434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414139619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:13 Heat of formation + Delta-G solvation = -32.728906 kcal Electronic energy + Delta-G solvation = -25083.568256 eV Core-core repulsion = 21321.688961 eV Total energy + Delta-G solvation = -3761.879295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.44484 -40.84371 -39.23885 -37.46906 -36.76715 -35.76560 -34.60426 -32.25958 -31.71880 -30.91305 -29.66470 -27.88441 -26.27050 -25.86883 -24.61180 -23.54928 -22.64863 -21.82939 -20.15272 -19.33090 -19.01902 -18.35236 -17.65410 -17.45683 -17.25532 -16.69699 -16.32911 -16.06919 -15.89072 -15.75434 -15.52504 -15.21229 -14.87705 -14.77507 -14.54838 -14.38062 -13.96036 -13.49726 -13.43478 -13.11298 -12.85924 -12.79956 -12.69768 -12.68491 -12.50210 -12.37990 -12.32084 -11.90804 -11.74464 -11.62879 -11.49351 -10.91662 -10.77511 -10.12128 -9.94437 -9.24591 -8.97975 -8.26995 -6.31130 -0.81473 -0.46344 0.86489 1.35832 1.38078 1.48232 1.75092 1.85955 2.35416 2.96762 3.05218 3.07854 3.15183 3.24477 3.33564 3.54701 3.58577 3.83351 3.86834 3.94169 3.98482 4.11438 4.15079 4.31092 4.32255 4.46680 4.47367 4.62141 4.64332 4.67811 4.80906 4.87484 4.89156 4.98990 5.02785 5.05776 5.12885 5.23394 5.47339 5.53436 5.97570 6.18506 6.29060 6.33584 6.65928 6.72809 6.76035 6.93670 7.32315 8.89897 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.002036 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.550274 B =13748.035685 C =14263.269678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.543 5.543 3 C 0.172 3.828 4 C -0.519 4.519 5 H 0.033 0.967 6 C 0.003 3.997 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.263 1.263 10 H -0.285 1.285 11 H -0.246 1.246 12 C 0.025 3.975 13 C 0.121 3.879 14 H 0.094 0.906 15 O -0.562 6.562 16 C 0.027 3.973 17 O -0.315 6.315 18 C 0.153 3.847 19 C -0.168 4.168 20 C -0.042 4.042 21 C 0.024 3.976 22 N -0.439 5.439 23 C 0.066 3.934 24 C 0.094 3.906 25 N -0.467 5.467 26 C 0.097 3.903 27 C -0.162 4.162 28 H 0.026 0.974 29 H 0.044 0.956 30 H 0.073 0.927 31 H -0.008 1.008 32 H 0.034 0.966 33 H 0.266 0.734 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.384 0.616 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.171 0.829 40 H 0.166 0.834 41 H 0.217 0.783 42 H 0.215 0.785 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -24.795 23.589 34.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.267 5.267 3 C 0.045 3.955 4 C -0.557 4.557 5 H 0.051 0.949 6 C -0.194 4.194 7 N -0.591 5.591 8 Si 0.776 3.224 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.170 1.170 12 C -0.103 4.103 13 C 0.061 3.939 14 H 0.112 0.888 15 O -0.369 6.369 16 C -0.048 4.048 17 O -0.227 6.227 18 C 0.105 3.895 19 C -0.188 4.188 20 C -0.061 4.061 21 C -0.100 4.100 22 N -0.153 5.153 23 C -0.110 4.110 24 C -0.082 4.082 25 N -0.182 5.182 26 C -0.025 4.025 27 C -0.182 4.182 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.009 0.991 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.189 0.811 40 H 0.183 0.817 41 H 0.233 0.767 42 H 0.232 0.768 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.550 -24.751 22.567 33.682 hybrid contribution 0.379 1.303 0.646 1.503 sum 3.930 -23.448 23.213 33.228 Atomic orbital electron populations 1.22232 0.87819 1.01023 0.99965 1.61673 1.08060 1.14725 1.42271 1.19960 0.95361 0.85552 0.94580 1.21301 1.34894 0.97549 1.01977 0.94906 1.25941 0.97155 0.98483 0.97855 1.70074 1.48648 1.13903 1.26508 0.85636 0.79326 0.77408 0.80046 1.18836 1.21082 1.16978 1.22770 1.01710 0.93203 0.92615 1.21830 0.98319 0.89801 0.83982 0.88790 1.86642 1.24519 1.83886 1.41806 1.23794 1.01661 0.79137 1.00240 1.86171 1.74047 1.21917 1.40603 1.18790 0.93251 0.89987 0.87480 1.21516 1.00998 1.02938 0.93312 1.20937 0.96597 0.89757 0.98794 1.19781 1.00984 0.96576 0.92611 1.68658 1.16867 1.05385 1.24348 1.24732 0.94029 0.92283 0.99927 1.24846 0.92449 1.02239 0.88650 1.68725 1.18679 1.03321 1.27519 1.19240 0.96757 0.91941 0.94603 1.19808 1.07018 0.91173 1.00224 0.95587 0.93667 0.90893 0.99070 0.94797 0.92491 0.92698 0.89098 0.76728 0.88475 0.88676 0.81120 0.81659 0.76686 0.76804 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.42 9.14 127.69 1.17 2.59 16 2 N -0.54 -21.31 4.70 -927.05 -4.36 -25.67 16 3 C 0.17 7.90 3.79 85.56 0.32 8.22 16 4 C -0.52 -29.90 9.01 25.60 0.23 -29.67 16 5 H 0.03 2.15 7.37 -2.91 -0.02 2.13 16 6 C 0.00 0.15 5.47 84.65 0.46 0.61 16 7 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 8 Si 0.95 42.90 27.47 68.60 1.88 44.78 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.25 -10.09 6.54 99.48 0.65 -9.44 16 12 C 0.03 0.68 4.60 86.30 0.40 1.08 16 13 C 0.12 2.89 3.20 30.59 0.10 2.99 16 14 H 0.09 2.51 6.34 -2.39 -0.02 2.50 16 15 O -0.56 -16.00 13.25 -144.35 -1.91 -17.91 16 16 C 0.03 0.45 4.36 71.98 0.31 0.76 16 17 O -0.31 -6.99 10.07 -87.03 -0.88 -7.87 16 18 C 0.15 3.14 6.64 22.29 0.15 3.29 16 19 C -0.17 -2.52 8.94 22.15 0.20 -2.33 16 20 C -0.04 -0.66 9.98 22.33 0.22 -0.44 16 21 C 0.02 0.49 6.59 40.34 0.27 0.75 16 22 N -0.44 -7.75 10.46 -188.05 -1.97 -9.71 16 23 C 0.07 0.71 11.21 85.09 0.95 1.66 16 24 C 0.09 1.10 11.21 85.09 0.95 2.05 16 25 N -0.47 -9.66 10.47 -188.15 -1.97 -11.63 16 26 C 0.10 2.20 6.59 40.27 0.27 2.47 16 27 C -0.16 -3.76 9.89 22.41 0.22 -3.54 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.04 2.01 6.76 -2.39 -0.02 1.99 16 30 H 0.07 2.38 6.37 -2.38 -0.02 2.36 16 31 H -0.01 -0.37 7.18 -2.39 -0.02 -0.39 16 32 H 0.03 1.48 7.36 -2.39 -0.02 1.47 16 33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.05 1.28 8.12 -2.39 -0.02 1.26 16 35 H 0.09 2.16 7.93 -2.39 -0.02 2.14 16 36 H 0.38 8.06 9.05 -74.06 -0.67 7.39 16 37 H 0.10 1.18 7.63 -2.38 -0.02 1.16 16 38 H 0.10 1.13 7.64 -2.39 -0.02 1.11 16 39 H 0.17 1.50 6.22 -2.91 -0.02 1.48 16 40 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.22 0.25 8.06 -2.91 -0.02 0.22 16 42 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16 43 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -80.57 358.38 -2.36 -82.93 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.32 Total: 13.91 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: 6.22 Total: -9.51 kcal Atomic # 7 Polarization: -98.34 SS G_CDS: -8.00 Total: -106.33 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -2.79 Total: -25.78 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Total: -80.57 -2.36 -82.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414139619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.205 kcal (2) G-P(sol) polarization free energy of solvation -80.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds