Wall clock time and date at job start Tue Mar 31 2020 11:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47121 * 59.99761 * 8 6 4 10 10 H 1.48496 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46792 * 299.99995 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.52997 * 109.47254 * 293.95367 * 12 2 1 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 2 16 16 C 1.52992 * 109.47482 * 179.97438 * 13 12 2 17 17 O 1.42905 * 109.47641 * 184.99974 * 16 13 12 18 18 C 1.35834 * 117.00120 * 179.97438 * 17 16 13 19 19 C 1.39941 * 119.57776 * 359.73409 * 18 17 16 20 20 C 1.35936 * 120.90074 * 179.71020 * 19 18 17 21 21 C 1.40665 * 119.78540 * 0.55221 * 20 19 18 22 22 N 1.33703 * 121.03632 * 179.68050 * 21 20 19 23 23 C 1.31359 * 119.73069 * 180.02562 * 22 21 20 24 24 C 1.39611 * 120.73308 * 0.04071 * 23 22 21 25 25 N 1.31369 * 120.70190 * 359.97438 * 24 23 22 26 26 C 1.33797 * 119.70694 * 359.97438 * 25 24 23 27 27 C 1.36569 * 119.57758 * 179.97438 * 18 17 16 28 28 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 29 29 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 30 30 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 31 31 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 32 32 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 33 33 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 35 35 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 36 36 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 37 37 H 1.09001 * 109.47563 * 305.00337 * 16 13 12 38 38 H 1.09004 * 109.47313 * 64.99993 * 16 13 12 39 39 H 1.07997 * 119.54935 * 359.96963 * 19 18 17 40 40 H 1.07996 * 120.10200 * 180.27615 * 20 19 18 41 41 H 1.08012 * 119.63192 * 180.02562 * 23 22 21 42 42 H 1.07997 * 119.64614 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.15062 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.1756 3.4298 4.2698 10 1 2.1150 5.5733 3.1380 11 1 0.1057 4.2231 3.2863 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2426 -0.9702 14 1 0.5473 -2.3476 -0.9321 15 8 2.2010 -2.7392 0.2428 16 6 2.1794 -3.0404 -2.1552 17 8 1.7412 -4.3972 -2.0595 18 6 2.1425 -5.2456 -3.0414 19 6 2.9440 -4.7662 -4.0836 20 6 3.3658 -5.5929 -5.0769 21 6 2.9848 -6.9469 -5.0681 22 7 3.3800 -7.7805 -6.0358 23 6 3.0087 -9.0401 -6.0025 24 6 2.2041 -9.5196 -4.9672 25 7 1.8024 -8.7206 -4.0049 26 6 2.1679 -7.4336 -4.0157 27 6 1.7546 -6.5545 -3.0016 28 1 -0.3632 -1.0253 0.0709 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4511 -0.9233 31 1 3.0797 1.3445 -0.1083 32 1 1.5611 1.9273 -0.8310 33 1 2.9859 4.9182 0.7765 34 1 1.5612 -0.3873 -2.0628 35 1 3.0798 -0.6612 -1.1755 36 1 3.1653 -2.6771 0.2789 37 1 1.8145 -2.6056 -3.0858 38 1 3.2688 -3.0087 -2.1421 39 1 3.2349 -3.7263 -4.0966 40 1 3.9877 -5.2102 -5.8726 41 1 3.3292 -9.7123 -6.7849 42 1 1.9088 -10.5583 -4.9574 43 1 1.1330 -6.9117 -2.1939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414139620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:17 Heat of formation + Delta-G solvation = -8.866162 kcal Electronic energy + Delta-G solvation = -25029.796119 eV Core-core repulsion = 21268.951589 eV Total energy + Delta-G solvation = -3760.844529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.76669 -40.01933 -37.97467 -36.49002 -35.42905 -35.07876 -32.58200 -31.33810 -30.91339 -29.84484 -27.34632 -26.55109 -25.58869 -24.63617 -23.68719 -22.74778 -21.49591 -20.38097 -19.35810 -18.64134 -17.64084 -16.78961 -16.66677 -16.56598 -16.10242 -15.47975 -15.17600 -15.04361 -14.81642 -14.66469 -14.32301 -14.14701 -13.70706 -13.63707 -13.49764 -12.85871 -12.67206 -12.26202 -12.09056 -11.99468 -11.96631 -11.88085 -11.45331 -11.18176 -11.02388 -10.93925 -10.83257 -10.70484 -10.36822 -10.08753 -9.76244 -9.46651 -9.27110 -9.22602 -8.48117 -8.46950 -7.30120 -6.06534 -4.07726 -0.15594 0.20646 1.57668 2.40773 2.69017 3.32408 3.36129 3.39734 3.65701 3.69581 3.85054 3.92332 4.24165 4.36665 4.45567 4.49668 4.55995 4.59209 4.70367 4.84968 4.99035 5.03814 5.15381 5.27098 5.30598 5.32081 5.46134 5.49591 5.56647 5.77555 5.80804 5.90082 6.08585 6.10300 6.17451 6.28028 6.72062 6.88526 7.00102 7.19217 7.25267 7.36972 7.74403 7.87497 8.02548 8.12272 8.48245 8.99822 9.56681 11.04365 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.044024 B = 0.001927 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.870120 B =14523.128404 C =14901.209273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.528 5.528 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.900 3.100 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.106 0.894 15 O -0.536 6.536 16 C 0.022 3.978 17 O -0.294 6.294 18 C 0.159 3.841 19 C -0.170 4.170 20 C -0.042 4.042 21 C 0.044 3.956 22 N -0.415 5.415 23 C 0.056 3.944 24 C 0.086 3.914 25 N -0.432 5.432 26 C 0.119 3.881 27 C -0.141 4.141 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.010 0.990 31 H 0.029 0.971 32 H -0.010 1.010 33 H 0.262 0.738 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.371 0.629 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.173 0.827 42 H 0.175 0.825 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -23.767 -14.502 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.252 5.252 3 C 0.068 3.932 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.102 4.102 13 C 0.056 3.944 14 H 0.124 0.876 15 O -0.340 6.340 16 C -0.054 4.054 17 O -0.206 6.206 18 C 0.111 3.889 19 C -0.190 4.190 20 C -0.061 4.061 21 C -0.081 4.081 22 N -0.129 5.129 23 C -0.119 4.119 24 C -0.089 4.089 25 N -0.147 5.147 26 C -0.005 4.005 27 C -0.161 4.161 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.218 0.782 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.191 0.809 42 H 0.192 0.808 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.546 -23.707 -13.674 27.373 hybrid contribution 0.302 1.160 -0.434 1.275 sum 0.848 -22.547 -14.108 26.610 Atomic orbital electron populations 1.22284 0.88726 0.99785 1.00616 1.62000 1.07077 1.17546 1.38612 1.19755 0.95291 0.81324 0.96787 1.21119 1.34946 0.96876 1.01664 0.91769 1.24994 0.95262 0.97336 0.97072 1.69943 1.38353 1.11515 1.34161 0.86529 0.78723 0.78261 0.83721 1.20096 1.21379 1.20261 1.22621 1.00870 0.92676 0.94080 1.21953 0.99458 0.90784 0.82233 0.87592 1.86648 1.25181 1.84748 1.37379 1.23873 1.00129 0.79790 1.01589 1.86223 1.69916 1.20296 1.44125 1.18725 0.92332 0.90265 0.87628 1.21346 1.00693 1.01733 0.95257 1.20656 0.97286 0.90204 0.97989 1.19523 0.99602 0.95421 0.93523 1.68591 1.17860 1.03713 1.22775 1.23956 0.96061 0.92897 0.99032 1.24072 0.93749 1.00907 0.90220 1.68707 1.19211 1.02697 1.24075 1.19113 0.95518 0.91371 0.94450 1.19757 1.05614 0.90021 1.00739 0.93332 0.90468 0.97171 0.95296 0.99176 0.92859 0.94906 0.90769 0.78229 0.90812 0.91126 0.83747 0.83700 0.80948 0.80835 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.14 60.07 0.55 1.21 16 2 N -0.53 -10.96 4.62 -244.37 -1.13 -12.09 16 3 C 0.19 4.90 4.72 -4.98 -0.02 4.87 16 4 C -0.51 -14.10 8.46 -34.44 -0.29 -14.39 16 5 H 0.06 1.78 7.12 -52.48 -0.37 1.40 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.03 0.43 4.62 -3.83 -0.02 0.41 16 13 C 0.12 1.56 3.12 -26.74 -0.08 1.48 16 14 H 0.11 1.51 6.55 -51.93 -0.34 1.17 16 15 O -0.54 -8.11 13.17 -40.06 -0.53 -8.64 16 16 C 0.02 0.23 4.36 37.15 0.16 0.39 16 17 O -0.29 -3.53 10.07 -24.04 -0.24 -3.77 16 18 C 0.16 1.75 6.64 -39.55 -0.26 1.48 16 19 C -0.17 -1.53 8.94 -39.77 -0.36 -1.89 16 20 C -0.04 -0.39 9.98 -39.49 -0.39 -0.78 16 21 C 0.04 0.48 6.59 -84.76 -0.56 -0.08 16 22 N -0.42 -4.18 10.46 -10.78 -0.11 -4.29 16 23 C 0.06 0.39 11.21 -17.24 -0.19 0.20 16 24 C 0.09 0.62 11.21 -17.24 -0.19 0.42 16 25 N -0.43 -4.65 10.47 -10.83 -0.11 -4.77 16 26 C 0.12 1.38 6.59 -84.81 -0.56 0.82 16 27 C -0.14 -1.62 9.89 -39.36 -0.39 -2.01 16 28 H 0.05 0.81 6.47 -51.93 -0.34 0.48 16 29 H 0.08 1.61 6.76 -51.93 -0.35 1.26 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.03 0.50 8.12 -51.93 -0.42 0.07 16 35 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 36 H 0.37 4.43 9.05 45.56 0.41 4.84 16 37 H 0.07 0.64 7.62 -51.93 -0.40 0.25 16 38 H 0.07 0.61 7.65 -51.93 -0.40 0.21 16 39 H 0.14 0.99 6.22 -52.49 -0.33 0.66 16 40 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.17 0.52 8.06 -52.48 -0.42 0.09 16 42 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -34.12 362.08 -8.68 -42.81 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.02 Total: 0.86 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -2.71 Total: -6.43 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: -0.62 Total: -46.78 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: -0.77 Total: -12.41 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.12 -8.68 -42.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414139620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.943 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds