Wall clock time and date at job start Tue Mar 31 2020 11:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47121 * 59.99761 * 8 6 4 10 10 H 1.48496 * 109.46967 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46792 * 299.99995 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.52997 * 109.47254 * 293.95367 * 12 2 1 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 2 16 16 C 1.52992 * 109.47482 * 179.97438 * 13 12 2 17 17 O 1.42905 * 109.47641 * 184.99974 * 16 13 12 18 18 C 1.35834 * 117.00120 * 179.97438 * 17 16 13 19 19 C 1.39941 * 119.57776 * 359.73409 * 18 17 16 20 20 C 1.35936 * 120.90074 * 179.71020 * 19 18 17 21 21 C 1.40665 * 119.78540 * 0.55221 * 20 19 18 22 22 N 1.33703 * 121.03632 * 179.68050 * 21 20 19 23 23 C 1.31359 * 119.73069 * 180.02562 * 22 21 20 24 24 C 1.39611 * 120.73308 * 0.04071 * 23 22 21 25 25 N 1.31369 * 120.70190 * 359.97438 * 24 23 22 26 26 C 1.33797 * 119.70694 * 359.97438 * 25 24 23 27 27 C 1.36569 * 119.57758 * 179.97438 * 18 17 16 28 28 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 29 29 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 30 30 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 31 31 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 32 32 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 33 33 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 35 35 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 36 36 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 37 37 H 1.09001 * 109.47563 * 305.00337 * 16 13 12 38 38 H 1.09004 * 109.47313 * 64.99993 * 16 13 12 39 39 H 1.07997 * 119.54935 * 359.96963 * 19 18 17 40 40 H 1.07996 * 120.10200 * 180.27615 * 20 19 18 41 41 H 1.08012 * 119.63192 * 180.02562 * 23 22 21 42 42 H 1.07997 * 119.64614 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.15062 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.1756 3.4298 4.2698 10 1 2.1150 5.5733 3.1380 11 1 0.1057 4.2231 3.2863 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2426 -0.9702 14 1 0.5473 -2.3476 -0.9321 15 8 2.2010 -2.7392 0.2428 16 6 2.1794 -3.0404 -2.1552 17 8 1.7412 -4.3972 -2.0595 18 6 2.1425 -5.2456 -3.0414 19 6 2.9440 -4.7662 -4.0836 20 6 3.3658 -5.5929 -5.0769 21 6 2.9848 -6.9469 -5.0681 22 7 3.3800 -7.7805 -6.0358 23 6 3.0087 -9.0401 -6.0025 24 6 2.2041 -9.5196 -4.9672 25 7 1.8024 -8.7206 -4.0049 26 6 2.1679 -7.4336 -4.0157 27 6 1.7546 -6.5545 -3.0016 28 1 -0.3632 -1.0253 0.0709 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4511 -0.9233 31 1 3.0797 1.3445 -0.1083 32 1 1.5611 1.9273 -0.8310 33 1 2.9859 4.9182 0.7765 34 1 1.5612 -0.3873 -2.0628 35 1 3.0798 -0.6612 -1.1755 36 1 3.1653 -2.6771 0.2789 37 1 1.8145 -2.6056 -3.0858 38 1 3.2688 -3.0087 -2.1421 39 1 3.2349 -3.7263 -4.0966 40 1 3.9877 -5.2102 -5.8726 41 1 3.3292 -9.7123 -6.7849 42 1 1.9088 -10.5583 -4.9574 43 1 1.1330 -6.9117 -2.1939 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414139620.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:16 Heat of formation + Delta-G solvation = -35.769310 kcal Electronic energy + Delta-G solvation = -25030.962727 eV Core-core repulsion = 21268.951589 eV Total energy + Delta-G solvation = -3762.011137 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.44522 -40.84205 -39.20266 -37.43904 -36.73249 -35.76536 -34.62156 -32.22361 -31.69771 -30.81413 -29.17565 -27.86689 -26.27671 -25.98233 -24.69275 -23.59497 -22.81868 -21.85167 -20.14222 -19.33154 -18.59105 -18.31812 -17.65193 -17.45905 -17.22775 -16.81370 -16.31774 -16.04202 -15.84138 -15.73178 -15.52314 -15.11398 -14.96264 -14.86935 -14.40177 -14.21498 -13.80347 -13.47712 -13.26793 -13.07918 -12.82094 -12.79746 -12.71976 -12.68498 -12.56268 -12.49958 -12.37327 -12.00877 -11.75103 -11.62447 -11.41193 -10.87941 -10.60935 -10.11988 -9.94640 -9.24766 -8.97670 -8.20693 -6.29894 -0.81527 -0.46399 0.86468 1.41599 1.44248 1.52164 1.74897 1.85102 2.40858 2.96764 3.08687 3.12023 3.16568 3.25054 3.35569 3.54791 3.59267 3.83261 3.87428 3.94197 3.98335 4.11615 4.14929 4.30981 4.32009 4.46764 4.51922 4.62466 4.70145 4.71997 4.80712 4.87422 4.98941 5.05642 5.08470 5.12490 5.18041 5.31482 5.47246 5.64836 6.04758 6.18037 6.29151 6.30354 6.62337 6.72910 6.85520 6.92207 7.39573 8.89756 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.044024 B = 0.001927 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.870120 B =14523.128404 C =14901.209273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.027 3.973 13 C 0.125 3.875 14 H 0.097 0.903 15 O -0.558 6.558 16 C 0.027 3.973 17 O -0.313 6.313 18 C 0.152 3.848 19 C -0.169 4.169 20 C -0.042 4.042 21 C 0.024 3.976 22 N -0.439 5.439 23 C 0.066 3.934 24 C 0.094 3.906 25 N -0.466 5.466 26 C 0.098 3.902 27 C -0.160 4.160 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.015 0.985 31 H 0.009 0.991 32 H -0.035 1.035 33 H 0.264 0.736 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.383 0.617 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.217 0.783 42 H 0.216 0.784 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 -25.261 -15.572 29.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.573 5.573 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.194 1.194 12 C -0.102 4.102 13 C 0.065 3.935 14 H 0.115 0.885 15 O -0.365 6.365 16 C -0.048 4.048 17 O -0.225 6.225 18 C 0.104 3.896 19 C -0.189 4.189 20 C -0.061 4.061 21 C -0.099 4.099 22 N -0.153 5.153 23 C -0.110 4.110 24 C -0.081 4.081 25 N -0.182 5.182 26 C -0.025 4.025 27 C -0.180 4.180 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.033 0.967 31 H 0.027 0.973 32 H -0.018 1.018 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.232 0.768 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.186 0.814 40 H 0.182 0.818 41 H 0.233 0.767 42 H 0.233 0.767 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.863 -25.198 -14.742 29.206 hybrid contribution 0.207 1.403 -0.209 1.433 sum 1.069 -23.795 -14.950 28.122 Atomic orbital electron populations 1.22244 0.87869 1.01026 0.99865 1.61872 1.07988 1.15093 1.41560 1.19398 0.93894 0.83602 0.94900 1.21447 1.34894 0.97470 1.02532 0.92220 1.25867 0.95068 0.98046 1.00569 1.70056 1.39280 1.11888 1.36072 0.85473 0.78760 0.77208 0.79402 1.19504 1.20764 1.19414 1.22699 1.01171 0.93551 0.92739 1.21769 0.99076 0.89523 0.83106 0.88485 1.86606 1.26493 1.84841 1.38512 1.23769 1.01274 0.79050 1.00711 1.86163 1.70530 1.20913 1.44931 1.18797 0.92912 0.89882 0.88002 1.21509 1.00128 1.02802 0.94463 1.20926 0.97072 0.89728 0.98381 1.19764 1.00003 0.96406 0.93766 1.68659 1.18850 1.04968 1.22834 1.24748 0.94313 0.92438 0.99453 1.24856 0.92179 1.02209 0.88884 1.68719 1.20632 1.02885 1.25915 1.19226 0.96404 0.91952 0.94917 1.19803 1.06390 0.90779 1.01044 0.90775 0.92697 0.96656 0.97300 1.01761 0.92680 0.93725 0.90121 0.76812 0.88700 0.88997 0.81415 0.81762 0.76654 0.76718 0.84468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 9.14 127.69 1.17 2.63 16 2 N -0.54 -22.51 4.62 -927.04 -4.28 -26.80 16 3 C 0.21 10.79 4.72 85.56 0.40 11.19 16 4 C -0.53 -29.64 8.46 25.60 0.22 -29.42 16 5 H 0.06 3.35 7.12 -2.91 -0.02 3.33 16 6 C 0.00 0.15 5.46 84.66 0.46 0.61 16 7 N -0.93 -55.32 13.29 21.45 0.28 -55.04 16 8 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 9 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.03 0.84 4.62 86.30 0.40 1.23 16 13 C 0.13 3.23 3.12 30.59 0.10 3.32 16 14 H 0.10 2.67 6.55 -2.39 -0.02 2.65 16 15 O -0.56 -16.52 13.17 -144.37 -1.90 -18.42 16 16 C 0.03 0.52 4.36 71.98 0.31 0.83 16 17 O -0.31 -7.32 10.07 -87.07 -0.88 -8.20 16 18 C 0.15 3.30 6.64 22.29 0.15 3.45 16 19 C -0.17 -2.82 8.94 22.15 0.20 -2.63 16 20 C -0.04 -0.72 9.98 22.33 0.22 -0.50 16 21 C 0.02 0.51 6.59 40.34 0.27 0.77 16 22 N -0.44 -8.09 10.46 -188.03 -1.97 -10.06 16 23 C 0.07 0.74 11.21 85.10 0.95 1.70 16 24 C 0.09 1.14 11.21 85.09 0.95 2.09 16 25 N -0.47 -9.80 10.47 -188.16 -1.97 -11.77 16 26 C 0.10 2.27 6.59 40.27 0.27 2.53 16 27 C -0.16 -3.82 9.89 22.41 0.22 -3.59 16 28 H 0.07 2.43 6.47 -2.38 -0.02 2.41 16 29 H 0.05 2.31 6.76 -2.39 -0.02 2.30 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.01 0.49 7.93 -2.39 -0.02 0.47 16 32 H -0.04 -1.97 8.12 -2.38 -0.02 -1.99 16 33 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.04 1.29 8.12 -2.39 -0.02 1.27 16 35 H 0.08 2.36 7.93 -2.39 -0.02 2.34 16 36 H 0.38 8.86 9.05 -74.06 -0.67 8.19 16 37 H 0.09 1.41 7.62 -2.39 -0.02 1.39 16 38 H 0.09 1.36 7.65 -2.39 -0.02 1.34 16 39 H 0.17 1.87 6.22 -2.91 -0.02 1.85 16 40 H 0.16 2.05 8.06 -2.91 -0.02 2.02 16 41 H 0.22 0.34 8.06 -2.90 -0.02 0.32 16 42 H 0.22 0.53 8.06 -2.91 -0.02 0.51 16 43 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -75.82 362.08 -2.03 -77.85 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.37 Total: 11.94 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: 6.29 Total: -5.78 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -7.93 Total: -103.65 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -2.78 Total: -26.62 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -75.82 -2.03 -77.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414139620.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.080 kcal (2) G-P(sol) polarization free energy of solvation -75.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds