Wall clock time and date at job start Tue Mar 31 2020 11:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99732 * 2 1 4 4 C 1.50698 * 109.47194 * 66.04886 * 3 2 1 5 5 H 1.08002 * 119.99833 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00280 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00205 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99780 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.46817 * 90.00766 * 8 6 4 10 10 H 1.48499 * 109.47313 * 210.00037 * 8 6 4 11 11 H 1.48501 * 109.47532 * 330.00998 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04938 * 2 1 3 13 13 C 1.52994 * 109.46825 * 199.82955 * 12 2 1 14 14 H 1.09004 * 109.47697 * 300.49537 * 13 12 2 15 15 O 1.42902 * 109.47237 * 60.49677 * 13 12 2 16 16 C 1.53002 * 109.47197 * 180.49386 * 13 12 2 17 17 O 1.42896 * 109.47183 * 174.99703 * 16 13 12 18 18 C 1.35787 * 116.99778 * 179.97438 * 17 16 13 19 19 C 1.39918 * 119.59212 * 359.73442 * 18 17 16 20 20 C 1.36027 * 120.89442 * 179.70332 * 19 18 17 21 21 C 1.40364 * 119.69626 * 0.56104 * 20 19 18 22 22 C 1.40528 * 122.00349 * 179.71635 * 21 20 19 23 23 N 1.31832 * 118.38469 * 179.97438 * 22 21 20 24 24 C 1.32492 * 121.65196 * 0.02562 * 23 22 21 25 25 N 1.31143 * 122.82264 * 0.02562 * 24 23 22 26 26 C 1.33952 * 120.24673 * 359.97438 * 25 24 23 27 27 C 1.37763 * 119.59006 * 180.02562 * 18 17 16 28 28 H 1.09005 * 109.47188 * 178.41316 * 1 2 3 29 29 H 1.09002 * 109.47544 * 298.41329 * 1 2 3 30 30 H 1.08999 * 109.47651 * 58.41601 * 1 2 3 31 31 H 1.09004 * 109.47257 * 186.04552 * 3 2 1 32 32 H 1.08997 * 109.47436 * 306.04940 * 3 2 1 33 33 H 0.96997 * 120.00208 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46948 * 319.82838 * 12 2 1 35 35 H 1.08996 * 109.46890 * 79.82986 * 12 2 1 36 36 H 0.96699 * 114.00053 * 59.99755 * 15 13 12 37 37 H 1.09001 * 109.47349 * 294.99963 * 16 13 12 38 38 H 1.09001 * 109.46827 * 55.00406 * 16 13 12 39 39 H 1.07995 * 119.55570 * 359.97438 * 19 18 17 40 40 H 1.07996 * 120.15360 * 180.30011 * 20 19 18 41 41 H 1.08000 * 120.80642 * 0.02562 * 22 21 20 42 42 H 1.08003 * 118.58865 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.27425 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5114 2.0485 6 6 2.0266 3.3494 1.5285 7 7 1.7142 3.9389 2.6619 8 14 2.9997 4.2762 0.2310 9 1 2.0629 4.9799 -0.6815 10 1 3.8860 5.2679 0.8913 11 1 3.8236 3.3176 -0.5486 12 6 1.9954 -0.7659 -1.1377 13 6 3.4450 -1.1661 -0.8559 14 1 4.0462 -0.2699 -0.7026 15 8 3.4950 -1.9798 0.3178 16 6 3.9973 -1.9533 -2.0460 17 8 5.3838 -2.2265 -1.8342 18 6 6.0299 -2.9232 -2.8042 19 6 5.3274 -3.3397 -3.9403 20 6 5.9497 -4.0339 -4.9309 21 6 7.3122 -4.3484 -4.8093 22 6 8.0017 -5.0682 -5.8000 23 7 9.2813 -5.3241 -5.6126 24 6 9.9186 -4.9210 -4.5232 25 7 9.3306 -4.2474 -3.5639 26 6 8.0312 -3.9357 -3.6568 27 6 7.3676 -3.2166 -2.6547 28 1 -0.3634 -1.0273 -0.0285 29 1 -0.3634 0.4890 0.9039 30 1 -0.3634 0.5382 -0.8754 31 1 3.0797 1.3444 -0.1082 32 1 1.5610 1.9273 -0.8308 33 1 1.9888 4.8550 2.8239 34 1 1.3925 -1.6624 -1.2822 35 1 1.9562 -0.1526 -2.0378 36 1 2.9811 -2.7963 0.2525 37 1 3.4528 -2.8925 -2.1446 38 1 3.8776 -1.3665 -2.9567 39 1 4.2779 -3.1030 -4.0342 40 1 5.3970 -4.3452 -5.8049 41 1 7.4957 -5.4029 -6.6935 42 1 10.9673 -5.1582 -4.4204 43 1 7.9003 -2.8946 -1.7721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414154976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:20 Heat of formation + Delta-G solvation = -6.019531 kcal Electronic energy + Delta-G solvation = -25305.419737 eV Core-core repulsion = 21544.698648 eV Total energy + Delta-G solvation = -3760.721090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.68257 -40.03065 -38.04547 -36.73107 -35.55253 -34.49228 -32.48737 -31.43356 -30.90560 -30.14565 -28.10543 -26.69637 -25.34569 -24.35708 -23.41584 -22.87507 -21.79606 -20.20039 -19.35848 -18.49090 -17.48139 -17.07255 -16.82612 -16.68363 -16.34171 -15.41346 -15.26690 -14.93925 -14.79226 -14.48245 -14.25505 -14.07338 -13.90368 -13.59360 -13.44949 -13.21345 -12.93099 -12.48406 -12.31455 -12.09293 -11.70219 -11.54580 -11.46899 -11.26377 -11.17883 -11.17409 -10.79993 -10.71508 -10.19798 -9.95183 -9.82360 -9.57064 -9.28171 -9.18596 -8.59456 -8.57379 -7.47798 -6.06553 -4.03891 -0.18412 0.35537 1.48061 2.54203 2.66570 3.25321 3.34160 3.34397 3.69808 3.77886 3.85951 3.99246 4.15103 4.36004 4.37725 4.39879 4.49984 4.53781 4.70800 4.80070 4.93341 5.08361 5.17418 5.21044 5.26368 5.32128 5.37381 5.50097 5.57337 5.70432 5.78440 5.88679 5.91569 6.08022 6.12844 6.14422 6.58375 6.66629 6.74926 6.88696 6.98293 7.53813 7.76282 7.77068 7.91657 7.94986 8.62165 9.02292 9.54543 11.06657 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.002401 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.751991 B =11659.272285 C =12288.648003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.520 5.520 3 C 0.161 3.839 4 C -0.508 4.508 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.112 0.888 15 O -0.529 6.529 16 C 0.024 3.976 17 O -0.291 6.291 18 C 0.176 3.824 19 C -0.193 4.193 20 C -0.035 4.035 21 C -0.202 4.202 22 C 0.209 3.791 23 N -0.541 5.541 24 C 0.305 3.695 25 N -0.511 5.511 26 C 0.196 3.804 27 C -0.157 4.157 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.012 0.988 31 H 0.029 0.971 32 H -0.017 1.017 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.364 0.636 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.174 0.826 42 H 0.196 0.804 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 -19.163 -19.405 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.244 5.244 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.099 0.901 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.701 3.299 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.193 1.193 12 C -0.104 4.104 13 C 0.056 3.944 14 H 0.130 0.870 15 O -0.332 6.332 16 C -0.052 4.052 17 O -0.202 6.202 18 C 0.125 3.875 19 C -0.212 4.212 20 C -0.055 4.055 21 C -0.207 4.207 22 C 0.030 3.970 23 N -0.255 5.255 24 C 0.016 3.984 25 N -0.225 5.225 26 C 0.070 3.930 27 C -0.177 4.177 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.047 0.953 32 H 0.001 0.999 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.210 0.790 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.191 0.809 42 H 0.212 0.788 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.111 -18.773 -18.188 27.681 hybrid contribution -1.157 0.820 -1.934 2.399 sum 7.954 -17.953 -20.122 28.115 Atomic orbital electron populations 1.22252 0.87734 0.99379 1.01545 1.61817 1.07254 1.16566 1.38724 1.20270 0.95280 0.83793 0.97200 1.20991 1.35610 0.97105 1.00882 0.90053 1.24900 0.95731 0.97393 0.95327 1.69884 1.46824 1.13261 1.23818 0.86884 0.80644 0.80133 0.82193 1.20411 1.21019 1.19260 1.22623 0.94920 0.98849 0.93975 1.21947 0.95648 0.93861 0.82986 0.87029 1.86764 1.73503 1.35838 1.37076 1.23866 0.79397 1.00619 1.01332 1.86243 1.24409 1.68215 1.41323 1.19107 0.91644 0.89424 0.87294 1.21281 1.01503 1.03474 0.94922 1.20772 0.92246 0.94385 0.98130 1.19525 0.96689 1.05848 0.98632 1.23631 0.89652 0.87753 0.95977 1.68335 1.10216 1.22860 1.24090 1.24952 1.00592 0.88703 0.84124 1.68784 1.09306 1.14495 1.29963 1.18478 0.89620 0.93153 0.91784 1.20000 0.91868 1.04559 1.01237 0.93433 0.89991 0.96935 0.95329 0.99929 0.92630 0.91291 0.94540 0.78987 0.91298 0.90852 0.84213 0.84062 0.80913 0.78759 0.83279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.31 60.06 0.56 1.26 16 2 N -0.52 -10.27 4.56 -244.38 -1.11 -11.38 16 3 C 0.16 3.80 3.62 -4.98 -0.02 3.78 16 4 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 5 H 0.08 2.51 7.34 -52.49 -0.39 2.12 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 8 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 12 C 0.03 0.37 4.66 -3.83 -0.02 0.36 16 13 C 0.12 1.66 3.31 -26.73 -0.09 1.57 16 14 H 0.11 1.93 6.78 -51.93 -0.35 1.58 16 15 O -0.53 -8.30 13.18 -40.08 -0.53 -8.83 16 16 C 0.02 0.25 4.36 37.16 0.16 0.41 16 17 O -0.29 -3.69 10.08 -23.93 -0.24 -3.93 16 18 C 0.18 1.95 6.68 -39.13 -0.26 1.69 16 19 C -0.19 -1.57 8.94 -39.75 -0.36 -1.93 16 20 C -0.03 -0.24 9.79 -39.58 -0.39 -0.63 16 21 C -0.20 -1.83 5.74 -106.81 -0.61 -2.44 16 22 C 0.21 1.58 11.15 -16.69 -0.19 1.40 16 23 N -0.54 -5.05 10.39 -14.18 -0.15 -5.20 16 24 C 0.31 2.92 12.23 -92.11 -1.13 1.80 16 25 N -0.51 -6.05 10.45 -12.60 -0.13 -6.18 16 26 C 0.20 2.29 6.61 -84.83 -0.56 1.73 16 27 C -0.16 -1.88 9.97 -39.07 -0.39 -2.27 16 28 H 0.05 0.69 7.94 -51.93 -0.41 0.28 16 29 H 0.08 1.66 6.90 -51.93 -0.36 1.30 16 30 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 31 H 0.03 0.69 5.69 -51.93 -0.30 0.40 16 32 H -0.02 -0.40 7.54 -51.93 -0.39 -0.79 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.07 0.79 7.80 -51.93 -0.41 0.39 16 35 H 0.04 0.50 8.00 -51.93 -0.42 0.09 16 36 H 0.36 4.07 9.05 45.56 0.41 4.48 16 37 H 0.07 0.53 7.62 -51.93 -0.40 0.14 16 38 H 0.07 0.64 7.65 -51.93 -0.40 0.24 16 39 H 0.14 0.82 6.22 -52.49 -0.33 0.50 16 40 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 41 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.20 1.22 8.06 -52.48 -0.42 0.79 16 43 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -35.42 358.96 -9.35 -44.76 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -5.00 Total: 1.45 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -3.69 Total: -6.08 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.62 Total: -49.54 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.77 Total: -12.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.42 -9.35 -44.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414154976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.744 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds