Wall clock time and date at job start Tue Mar 31 2020 11:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 110.99732 * 2 1 4 4 C 1.50698 * 109.47194 * 66.04886 * 3 2 1 5 5 H 1.08002 * 119.99833 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00280 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00205 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99780 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.46817 * 90.00766 * 8 6 4 10 10 H 1.48499 * 109.47313 * 210.00037 * 8 6 4 11 11 H 1.48501 * 109.47532 * 330.00998 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04938 * 2 1 3 13 13 C 1.52994 * 109.46825 * 199.82955 * 12 2 1 14 14 H 1.09004 * 109.47697 * 300.49537 * 13 12 2 15 15 O 1.42902 * 109.47237 * 60.49677 * 13 12 2 16 16 C 1.53002 * 109.47197 * 180.49386 * 13 12 2 17 17 O 1.42896 * 109.47183 * 174.99703 * 16 13 12 18 18 C 1.35787 * 116.99778 * 179.97438 * 17 16 13 19 19 C 1.39918 * 119.59212 * 359.73442 * 18 17 16 20 20 C 1.36027 * 120.89442 * 179.70332 * 19 18 17 21 21 C 1.40364 * 119.69626 * 0.56104 * 20 19 18 22 22 C 1.40528 * 122.00349 * 179.71635 * 21 20 19 23 23 N 1.31832 * 118.38469 * 179.97438 * 22 21 20 24 24 C 1.32492 * 121.65196 * 0.02562 * 23 22 21 25 25 N 1.31143 * 122.82264 * 0.02562 * 24 23 22 26 26 C 1.33952 * 120.24673 * 359.97438 * 25 24 23 27 27 C 1.37763 * 119.59006 * 180.02562 * 18 17 16 28 28 H 1.09005 * 109.47188 * 178.41316 * 1 2 3 29 29 H 1.09002 * 109.47544 * 298.41329 * 1 2 3 30 30 H 1.08999 * 109.47651 * 58.41601 * 1 2 3 31 31 H 1.09004 * 109.47257 * 186.04552 * 3 2 1 32 32 H 1.08997 * 109.47436 * 306.04940 * 3 2 1 33 33 H 0.96997 * 120.00208 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46948 * 319.82838 * 12 2 1 35 35 H 1.08996 * 109.46890 * 79.82986 * 12 2 1 36 36 H 0.96699 * 114.00053 * 59.99755 * 15 13 12 37 37 H 1.09001 * 109.47349 * 294.99963 * 16 13 12 38 38 H 1.09001 * 109.46827 * 55.00406 * 16 13 12 39 39 H 1.07995 * 119.55570 * 359.97438 * 19 18 17 40 40 H 1.07996 * 120.15360 * 180.30011 * 20 19 18 41 41 H 1.08000 * 120.80642 * 0.02562 * 22 21 20 42 42 H 1.08003 * 118.58865 * 179.97438 * 24 23 22 43 43 H 1.07997 * 120.27425 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0739 1.5114 2.0485 6 6 2.0266 3.3494 1.5285 7 7 1.7142 3.9389 2.6619 8 14 2.9997 4.2762 0.2310 9 1 2.0629 4.9799 -0.6815 10 1 3.8860 5.2679 0.8913 11 1 3.8236 3.3176 -0.5486 12 6 1.9954 -0.7659 -1.1377 13 6 3.4450 -1.1661 -0.8559 14 1 4.0462 -0.2699 -0.7026 15 8 3.4950 -1.9798 0.3178 16 6 3.9973 -1.9533 -2.0460 17 8 5.3838 -2.2265 -1.8342 18 6 6.0299 -2.9232 -2.8042 19 6 5.3274 -3.3397 -3.9403 20 6 5.9497 -4.0339 -4.9309 21 6 7.3122 -4.3484 -4.8093 22 6 8.0017 -5.0682 -5.8000 23 7 9.2813 -5.3241 -5.6126 24 6 9.9186 -4.9210 -4.5232 25 7 9.3306 -4.2474 -3.5639 26 6 8.0312 -3.9357 -3.6568 27 6 7.3676 -3.2166 -2.6547 28 1 -0.3634 -1.0273 -0.0285 29 1 -0.3634 0.4890 0.9039 30 1 -0.3634 0.5382 -0.8754 31 1 3.0797 1.3444 -0.1082 32 1 1.5610 1.9273 -0.8308 33 1 1.9888 4.8550 2.8239 34 1 1.3925 -1.6624 -1.2822 35 1 1.9562 -0.1526 -2.0378 36 1 2.9811 -2.7963 0.2525 37 1 3.4528 -2.8925 -2.1446 38 1 3.8776 -1.3665 -2.9567 39 1 4.2779 -3.1030 -4.0342 40 1 5.3970 -4.3452 -5.8049 41 1 7.4957 -5.4029 -6.6935 42 1 10.9673 -5.1582 -4.4204 43 1 7.9003 -2.8946 -1.7721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414154976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:19 Heat of formation + Delta-G solvation = -34.072562 kcal Electronic energy + Delta-G solvation = -25306.636208 eV Core-core repulsion = 21544.698648 eV Total energy + Delta-G solvation = -3761.937561 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35040 -40.84234 -39.21778 -37.60948 -36.83103 -35.16049 -34.60706 -32.32964 -31.54286 -31.14462 -29.97094 -27.78905 -25.98662 -25.56810 -24.62093 -23.63824 -22.93660 -21.70325 -20.13767 -19.15641 -19.04900 -18.15179 -17.65215 -17.64560 -17.34883 -16.65079 -16.37800 -16.04244 -15.87364 -15.59198 -15.43786 -15.17597 -14.70331 -14.59207 -14.51012 -14.33733 -14.12031 -14.05025 -13.28354 -13.20081 -13.03520 -12.87581 -12.63395 -12.54698 -12.21585 -12.19104 -11.97138 -11.84292 -11.79247 -11.63955 -11.43074 -10.92720 -10.79820 -10.25488 -9.82122 -9.34039 -8.97525 -8.29405 -6.32152 -0.78902 -0.34024 0.83342 1.30280 1.34366 1.43748 1.86511 1.88640 2.32215 3.01754 3.02957 3.11020 3.22648 3.31589 3.41591 3.52607 3.61309 3.77614 3.83131 3.90128 4.00779 4.16277 4.20612 4.30364 4.33876 4.51028 4.54228 4.63338 4.67599 4.69794 4.86584 4.90285 4.95362 4.97760 5.05811 5.10324 5.22745 5.28427 5.45032 5.55055 5.96365 6.01402 6.24197 6.37208 6.64835 6.74617 7.01399 7.10114 7.30961 8.87519 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.002401 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.751991 B =11659.272285 C =12288.648003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.545 5.545 3 C 0.172 3.828 4 C -0.514 4.514 5 H 0.036 0.964 6 C 0.004 3.996 7 N -0.949 5.949 8 Si 0.945 3.055 9 H -0.262 1.262 10 H -0.284 1.284 11 H -0.251 1.251 12 C 0.029 3.971 13 C 0.115 3.885 14 H 0.070 0.930 15 O -0.561 6.561 16 C 0.031 3.969 17 O -0.323 6.323 18 C 0.173 3.827 19 C -0.201 4.201 20 C -0.010 4.010 21 C -0.215 4.215 22 C 0.220 3.780 23 N -0.558 5.558 24 C 0.302 3.698 25 N -0.551 5.551 26 C 0.173 3.827 27 C -0.194 4.194 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.022 0.978 31 H 0.023 0.977 32 H -0.010 1.010 33 H 0.266 0.734 34 H 0.111 0.889 35 H 0.053 0.947 36 H 0.383 0.617 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.172 0.828 40 H 0.192 0.808 41 H 0.221 0.779 42 H 0.217 0.783 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.587 -21.055 -24.150 32.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.269 5.269 3 C 0.044 3.956 4 C -0.553 4.553 5 H 0.055 0.945 6 C -0.193 4.193 7 N -0.590 5.590 8 Si 0.769 3.231 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.175 1.175 12 C -0.100 4.100 13 C 0.055 3.945 14 H 0.088 0.912 15 O -0.367 6.367 16 C -0.044 4.044 17 O -0.235 6.235 18 C 0.124 3.876 19 C -0.219 4.219 20 C -0.030 4.030 21 C -0.219 4.219 22 C 0.042 3.958 23 N -0.272 5.272 24 C 0.014 3.986 25 N -0.267 5.267 26 C 0.047 3.953 27 C -0.215 4.215 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.008 0.992 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.232 0.768 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.189 0.811 40 H 0.209 0.791 41 H 0.238 0.762 42 H 0.233 0.767 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.204 -20.702 -22.952 31.979 hybrid contribution -0.913 1.284 -0.403 1.626 sum 7.291 -19.418 -23.356 31.236 Atomic orbital electron populations 1.22206 0.86779 1.01534 0.99999 1.61628 1.08341 1.14525 1.42380 1.19969 0.95019 0.86079 0.94485 1.21294 1.34596 0.97329 1.02063 0.94543 1.25880 0.97038 0.98596 0.97769 1.70052 1.48725 1.13868 1.26352 0.85742 0.79292 0.78732 0.79354 1.18722 1.20932 1.17475 1.22726 0.95184 0.99764 0.92303 1.21830 0.95336 0.93144 0.84213 0.91178 1.86710 1.74341 1.37122 1.38500 1.23814 0.78632 1.02127 0.99858 1.86183 1.25723 1.68853 1.42700 1.19270 0.91242 0.89116 0.88020 1.21567 1.02794 1.03664 0.93829 1.21312 0.91080 0.91796 0.98854 1.19822 0.97929 1.06204 0.97976 1.24423 0.88995 0.85769 0.96584 1.68440 1.11314 1.23569 1.23878 1.25439 1.01596 0.87767 0.83835 1.68768 1.10159 1.16298 1.31451 1.18691 0.90019 0.93696 0.92915 1.19960 0.93010 1.07032 1.01459 0.89497 0.93957 0.95919 0.95855 0.99242 0.92499 0.87133 0.92915 0.76823 0.87619 0.88474 0.81091 0.79093 0.76242 0.76686 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 9.31 127.69 1.19 2.66 16 2 N -0.54 -20.93 4.56 -927.07 -4.23 -25.15 16 3 C 0.17 8.09 3.62 85.56 0.31 8.40 16 4 C -0.51 -30.15 9.09 25.60 0.23 -29.91 16 5 H 0.04 2.39 7.34 -2.91 -0.02 2.37 16 6 C 0.00 0.24 5.47 84.65 0.46 0.71 16 7 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 8 Si 0.95 44.57 27.47 68.60 1.88 46.45 16 9 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.25 -11.05 6.54 99.48 0.65 -10.39 16 12 C 0.03 0.73 4.66 86.30 0.40 1.14 16 13 C 0.11 3.11 3.31 30.59 0.10 3.21 16 14 H 0.07 2.46 6.78 -2.38 -0.02 2.44 16 15 O -0.56 -17.25 13.18 -144.34 -1.90 -19.15 16 16 C 0.03 0.54 4.36 71.98 0.31 0.85 16 17 O -0.32 -7.96 10.08 -86.53 -0.87 -8.83 16 18 C 0.17 3.67 6.68 22.56 0.15 3.82 16 19 C -0.20 -2.46 8.94 22.16 0.20 -2.26 16 20 C -0.01 -0.09 9.79 22.27 0.22 0.12 16 21 C -0.21 -3.32 5.74 -21.28 -0.12 -3.44 16 22 C 0.22 2.57 11.15 85.25 0.95 3.52 16 23 N -0.56 -9.34 10.39 -198.78 -2.07 -11.41 16 24 C 0.30 5.70 12.23 180.87 2.21 7.91 16 25 N -0.55 -13.58 10.45 -193.77 -2.03 -15.60 16 26 C 0.17 4.06 6.61 40.19 0.27 4.33 16 27 C -0.19 -4.94 9.97 22.60 0.23 -4.71 16 28 H 0.09 2.27 7.94 -2.38 -0.02 2.25 16 29 H 0.04 1.76 6.90 -2.39 -0.02 1.74 16 30 H 0.02 0.72 8.13 -2.39 -0.02 0.70 16 31 H 0.02 1.13 5.69 -2.38 -0.01 1.12 16 32 H -0.01 -0.45 7.54 -2.39 -0.02 -0.47 16 33 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 34 H 0.11 1.94 7.80 -2.39 -0.02 1.92 16 35 H 0.05 1.23 8.00 -2.39 -0.02 1.21 16 36 H 0.38 7.87 9.05 -74.06 -0.67 7.20 16 37 H 0.11 1.08 7.62 -2.39 -0.02 1.06 16 38 H 0.10 1.25 7.65 -2.39 -0.02 1.23 16 39 H 0.17 0.97 6.22 -2.91 -0.02 0.95 16 40 H 0.19 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.22 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.22 2.66 8.06 -2.91 -0.02 2.63 16 43 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -84.95 358.96 -1.48 -86.44 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 0.31 Total: 11.03 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 7.11 Total: -3.65 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -8.02 Total: -112.29 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -2.77 Total: -27.98 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -84.95 -1.48 -86.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414154976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.365 kcal (2) G-P(sol) polarization free energy of solvation -84.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds