Wall clock time and date at job start Tue Mar 31 2020 11:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47068 * 60.00158 * 8 6 4 10 10 H 1.48498 * 109.46985 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46869 * 300.00247 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 O 1.42903 * 109.47039 * 184.99933 * 16 13 12 18 18 C 1.35778 * 116.99661 * 180.02562 * 17 16 13 19 19 C 1.39929 * 119.59596 * 359.73093 * 18 17 16 20 20 C 1.36023 * 120.89488 * 179.71010 * 19 18 17 21 21 C 1.40359 * 119.69663 * 0.55882 * 20 19 18 22 22 C 1.40526 * 121.99996 * 179.72613 * 21 20 19 23 23 N 1.31836 * 118.38620 * 179.97438 * 22 21 20 24 24 C 1.32499 * 121.64691 * 359.97438 * 23 22 21 25 25 N 1.31136 * 122.82418 * 0.03055 * 24 23 22 26 26 C 1.33961 * 120.24704 * 359.97059 * 25 24 23 27 27 C 1.37759 * 119.59118 * 180.02562 * 18 17 16 28 28 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 29 29 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 30 30 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 31 31 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 32 32 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 33 33 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 35 35 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 36 36 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 37 37 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 38 38 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 39 39 H 1.07998 * 119.54982 * 359.97438 * 19 18 17 40 40 H 1.07998 * 120.14968 * 180.29965 * 20 19 18 41 41 H 1.07998 * 120.80790 * 359.97438 * 22 21 20 42 42 H 1.08003 * 118.58274 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.27722 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.1043 4.2236 -3.2849 10 1 2.1137 5.5737 -3.1376 11 1 2.1734 3.4304 -4.2699 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 8 5.4574 -1.9674 1.9569 18 6 6.1295 -2.5712 2.9704 19 6 5.4370 -2.9644 4.1211 20 6 6.0828 -3.5766 5.1499 21 6 7.4645 -3.8081 5.0642 22 6 8.1808 -4.4312 6.1002 23 7 9.4772 -4.6137 5.9443 24 6 10.1064 -4.2264 4.8445 25 7 9.4939 -3.6402 3.8441 26 6 8.1758 -3.4081 3.9026 27 6 7.4857 -2.7837 2.8559 28 1 -0.3634 0.4290 -0.9338 29 1 -0.3634 0.5940 0.8385 30 1 -0.3632 -1.0233 0.0953 31 1 1.5610 1.9274 0.8309 32 1 3.0796 1.3445 0.1083 33 1 2.9861 4.9182 -0.7768 34 1 1.8943 -0.1776 2.0496 35 1 1.4350 -1.6951 1.2405 36 1 3.1332 -2.7955 -0.1323 37 1 3.8797 -1.1513 3.0120 38 1 3.5677 -2.7404 2.2732 39 1 4.3747 -2.7831 4.1915 40 1 5.5356 -3.8794 6.0304 41 1 7.6816 -4.7527 7.0023 42 1 11.1697 -4.4001 4.7691 43 1 8.0123 -2.4728 1.9657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414154977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:23 Heat of formation + Delta-G solvation = -10.597358 kcal Electronic energy + Delta-G solvation = -25245.826022 eV Core-core repulsion = 21484.906422 eV Total energy + Delta-G solvation = -3760.919599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.62046 -39.95066 -37.93922 -36.63924 -35.44346 -34.43355 -32.53450 -31.34853 -30.84146 -30.02599 -27.43641 -26.60062 -25.28294 -24.31772 -23.50337 -22.84038 -21.81918 -20.25427 -19.27951 -18.42875 -17.40205 -16.89465 -16.68920 -16.48833 -16.19215 -15.32103 -15.18338 -14.83199 -14.70575 -14.43486 -14.35318 -13.97063 -13.71314 -13.50716 -13.40067 -13.34669 -12.70170 -12.34651 -12.02404 -11.98392 -11.54493 -11.48411 -11.25983 -11.17303 -11.12522 -10.97828 -10.75811 -10.69231 -10.41492 -9.84911 -9.79186 -9.51569 -9.22318 -9.12045 -8.50281 -8.44072 -7.32030 -6.04174 -4.05071 -0.12277 0.41846 1.54237 2.60670 2.75526 3.33730 3.37881 3.41188 3.75778 3.83148 3.92196 4.05478 4.21772 4.39959 4.42955 4.51484 4.60448 4.61013 4.77441 4.90337 5.06484 5.16438 5.29347 5.31010 5.35673 5.38639 5.49780 5.56873 5.63989 5.84188 5.86067 5.95431 5.97918 6.14474 6.25179 6.28647 6.64170 6.72334 7.05417 7.19528 7.23262 7.74923 7.81781 7.95844 8.02078 8.12912 8.48957 9.01456 9.59045 11.06925 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.002257 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.700628 B =12404.289910 C =13050.544240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.191 3.809 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.030 3.970 13 C 0.115 3.885 14 H 0.118 0.882 15 O -0.532 6.532 16 C 0.024 3.976 17 O -0.290 6.290 18 C 0.177 3.823 19 C -0.193 4.193 20 C -0.035 4.035 21 C -0.202 4.202 22 C 0.208 3.792 23 N -0.542 5.542 24 C 0.304 3.696 25 N -0.511 5.511 26 C 0.196 3.804 27 C -0.157 4.157 28 H 0.074 0.926 29 H 0.013 0.987 30 H 0.043 0.957 31 H -0.010 1.010 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.363 0.637 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.174 0.826 42 H 0.196 0.804 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.572 -18.102 15.157 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.066 3.934 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.100 4.100 13 C 0.055 3.945 14 H 0.135 0.865 15 O -0.335 6.335 16 C -0.051 4.051 17 O -0.201 6.201 18 C 0.126 3.874 19 C -0.211 4.211 20 C -0.056 4.056 21 C -0.207 4.207 22 C 0.030 3.970 23 N -0.256 5.256 24 C 0.016 3.984 25 N -0.225 5.225 26 C 0.070 3.930 27 C -0.177 4.177 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.008 0.992 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.083 0.917 36 H 0.208 0.792 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.191 0.809 42 H 0.212 0.788 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.254 -17.645 14.081 23.712 hybrid contribution -1.851 0.692 0.508 2.041 sum 5.403 -16.953 14.590 23.010 Atomic orbital electron populations 1.22193 0.88414 0.98687 1.01421 1.62022 1.06804 1.18034 1.38683 1.19825 0.95544 0.81248 0.96793 1.21084 1.34931 0.96828 1.01659 0.91878 1.24988 0.95261 0.97364 0.97024 1.69937 1.38316 1.11543 1.34139 0.86542 0.78618 0.78315 0.83839 1.20319 1.21364 1.20067 1.22568 0.94473 0.98717 0.94208 1.22005 0.95168 0.94184 0.83127 0.86470 1.86760 1.76239 1.30484 1.39994 1.23868 0.78659 1.01053 1.01558 1.86248 1.22424 1.72775 1.38661 1.19116 0.91541 0.89835 0.86875 1.21292 1.01500 1.03933 0.94394 1.20765 0.92082 0.94559 0.98187 1.19515 0.96338 1.06674 0.98165 1.23623 0.89577 0.87677 0.96161 1.68336 1.10600 1.21161 1.25478 1.24939 1.00877 0.88816 0.83816 1.68780 1.08643 1.15262 1.29852 1.18477 0.89576 0.93117 0.91867 1.19997 0.91186 1.05869 1.00665 0.90732 0.96840 0.93823 0.99200 0.94996 0.92843 0.94721 0.91657 0.79202 0.90761 0.91472 0.84199 0.84084 0.80943 0.78800 0.83282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 9.32 60.07 0.56 1.32 16 2 N -0.53 -10.93 4.66 -244.37 -1.14 -12.07 16 3 C 0.19 4.85 4.57 -4.97 -0.02 4.83 16 4 C -0.51 -14.19 8.58 -34.44 -0.30 -14.48 16 5 H 0.06 1.75 7.10 -52.49 -0.37 1.38 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.03 0.47 4.61 -3.83 -0.02 0.45 16 13 C 0.12 1.77 3.30 -26.73 -0.09 1.68 16 14 H 0.12 2.23 6.46 -51.93 -0.34 1.90 16 15 O -0.53 -8.65 13.25 -40.08 -0.53 -9.18 16 16 C 0.02 0.28 4.36 37.16 0.16 0.44 16 17 O -0.29 -3.94 10.08 -23.90 -0.24 -4.18 16 18 C 0.18 2.09 6.68 -39.12 -0.26 1.83 16 19 C -0.19 -1.70 8.94 -39.74 -0.36 -2.06 16 20 C -0.04 -0.26 9.79 -39.58 -0.39 -0.65 16 21 C -0.20 -1.94 5.74 -106.81 -0.61 -2.55 16 22 C 0.21 1.68 11.15 -16.69 -0.19 1.49 16 23 N -0.54 -5.30 10.39 -14.18 -0.15 -5.44 16 24 C 0.30 3.05 12.23 -92.11 -1.13 1.92 16 25 N -0.51 -6.30 10.45 -12.60 -0.13 -6.43 16 26 C 0.20 2.40 6.61 -84.83 -0.56 1.83 16 27 C -0.16 -1.99 9.97 -39.07 -0.39 -2.38 16 28 H 0.07 1.48 7.02 -51.93 -0.36 1.11 16 29 H 0.01 0.24 8.07 -51.93 -0.42 -0.18 16 30 H 0.04 0.65 7.88 -51.93 -0.41 0.24 16 31 H -0.01 -0.26 8.07 -51.93 -0.42 -0.68 16 32 H 0.03 0.87 6.34 -51.93 -0.33 0.54 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 34 H 0.03 0.53 8.05 -51.93 -0.42 0.11 16 35 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 36 H 0.36 4.19 9.05 45.56 0.41 4.60 16 37 H 0.07 0.74 7.62 -51.93 -0.40 0.34 16 38 H 0.07 0.57 7.65 -51.93 -0.40 0.18 16 39 H 0.14 0.93 6.22 -52.49 -0.33 0.60 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 41 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.20 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -34.72 362.16 -9.70 -44.42 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.01 Total: 1.49 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -3.68 Total: -4.86 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.68 Total: -49.87 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.77 Total: -13.36 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.72 -9.70 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414154977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.824 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds