Wall clock time and date at job start Tue Mar 31 2020 11:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47068 * 60.00158 * 8 6 4 10 10 H 1.48498 * 109.46985 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46869 * 300.00247 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 O 1.42903 * 109.47039 * 184.99933 * 16 13 12 18 18 C 1.35778 * 116.99661 * 180.02562 * 17 16 13 19 19 C 1.39929 * 119.59596 * 359.73093 * 18 17 16 20 20 C 1.36023 * 120.89488 * 179.71010 * 19 18 17 21 21 C 1.40359 * 119.69663 * 0.55882 * 20 19 18 22 22 C 1.40526 * 121.99996 * 179.72613 * 21 20 19 23 23 N 1.31836 * 118.38620 * 179.97438 * 22 21 20 24 24 C 1.32499 * 121.64691 * 359.97438 * 23 22 21 25 25 N 1.31136 * 122.82418 * 0.03055 * 24 23 22 26 26 C 1.33961 * 120.24704 * 359.97059 * 25 24 23 27 27 C 1.37759 * 119.59118 * 180.02562 * 18 17 16 28 28 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 29 29 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 30 30 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 31 31 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 32 32 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 33 33 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 35 35 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 36 36 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 37 37 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 38 38 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 39 39 H 1.07998 * 119.54982 * 359.97438 * 19 18 17 40 40 H 1.07998 * 120.14968 * 180.29965 * 20 19 18 41 41 H 1.07998 * 120.80790 * 359.97438 * 22 21 20 42 42 H 1.08003 * 118.58274 * 179.97438 * 24 23 22 43 43 H 1.08000 * 120.27722 * 359.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.1043 4.2236 -3.2849 10 1 2.1137 5.5737 -3.1376 11 1 2.1734 3.4304 -4.2699 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 8 5.4574 -1.9674 1.9569 18 6 6.1295 -2.5712 2.9704 19 6 5.4370 -2.9644 4.1211 20 6 6.0828 -3.5766 5.1499 21 6 7.4645 -3.8081 5.0642 22 6 8.1808 -4.4312 6.1002 23 7 9.4772 -4.6137 5.9443 24 6 10.1064 -4.2264 4.8445 25 7 9.4939 -3.6402 3.8441 26 6 8.1758 -3.4081 3.9026 27 6 7.4857 -2.7837 2.8559 28 1 -0.3634 0.4290 -0.9338 29 1 -0.3634 0.5940 0.8385 30 1 -0.3632 -1.0233 0.0953 31 1 1.5610 1.9274 0.8309 32 1 3.0796 1.3445 0.1083 33 1 2.9861 4.9182 -0.7768 34 1 1.8943 -0.1776 2.0496 35 1 1.4350 -1.6951 1.2405 36 1 3.1332 -2.7955 -0.1323 37 1 3.8797 -1.1513 3.0120 38 1 3.5677 -2.7404 2.2732 39 1 4.3747 -2.7831 4.1915 40 1 5.5356 -3.8794 6.0304 41 1 7.6816 -4.7527 7.0023 42 1 11.1697 -4.4001 4.7691 43 1 8.0123 -2.4728 1.9657 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414154977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:22 Heat of formation + Delta-G solvation = -37.259834 kcal Electronic energy + Delta-G solvation = -25246.982194 eV Core-core repulsion = 21484.906422 eV Total energy + Delta-G solvation = -3762.075771 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.35207 -40.85030 -39.19722 -37.59183 -36.82738 -35.16040 -34.62504 -32.31280 -31.54370 -31.08699 -29.38985 -27.78748 -25.98591 -25.73218 -24.73924 -23.67154 -23.02333 -21.78284 -20.12869 -19.15449 -18.63269 -18.15912 -17.66327 -17.62234 -17.35382 -16.71536 -16.35454 -16.10268 -15.77541 -15.66738 -15.32254 -15.13662 -14.91295 -14.57814 -14.35810 -14.12402 -14.05750 -13.93610 -13.23326 -13.09665 -12.93787 -12.87772 -12.60717 -12.54994 -12.34071 -12.21572 -12.18954 -11.97831 -11.77200 -11.50895 -11.34590 -10.93479 -10.60865 -10.25480 -9.82525 -9.34398 -8.96806 -8.21733 -6.30855 -0.78912 -0.34290 0.83193 1.38951 1.42861 1.50286 1.86261 1.88433 2.39435 3.01684 3.10442 3.14089 3.22830 3.34363 3.41366 3.51279 3.59978 3.77014 3.84556 3.89716 3.99716 4.16285 4.20699 4.30270 4.33260 4.53401 4.57431 4.64083 4.67297 4.78205 4.86256 4.95773 5.00064 5.08467 5.11192 5.18862 5.27924 5.31214 5.45023 5.63799 6.01228 6.05442 6.23435 6.32600 6.63733 6.84914 7.00862 7.10125 7.38547 8.89090 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022895 B = 0.002257 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.700628 B =12404.289910 C =13050.544240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.547 5.547 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.032 3.968 13 C 0.118 3.882 14 H 0.064 0.936 15 O -0.559 6.559 16 C 0.033 3.967 17 O -0.323 6.323 18 C 0.172 3.828 19 C -0.202 4.202 20 C -0.010 4.010 21 C -0.215 4.215 22 C 0.221 3.779 23 N -0.557 5.557 24 C 0.302 3.698 25 N -0.551 5.551 26 C 0.173 3.827 27 C -0.194 4.194 28 H 0.052 0.948 29 H 0.011 0.989 30 H 0.087 0.913 31 H -0.036 1.036 32 H 0.003 0.997 33 H 0.264 0.736 34 H 0.040 0.960 35 H 0.111 0.889 36 H 0.384 0.616 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.170 0.830 40 H 0.193 0.807 41 H 0.222 0.778 42 H 0.218 0.782 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.550 -20.333 17.330 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.271 5.271 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.792 3.208 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.197 1.197 12 C -0.097 4.097 13 C 0.058 3.942 14 H 0.082 0.918 15 O -0.365 6.365 16 C -0.042 4.042 17 O -0.235 6.235 18 C 0.122 3.878 19 C -0.220 4.220 20 C -0.030 4.030 21 C -0.219 4.219 22 C 0.043 3.957 23 N -0.272 5.272 24 C 0.014 3.986 25 N -0.267 5.267 26 C 0.047 3.953 27 C -0.214 4.214 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.106 0.894 31 H -0.018 1.018 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.130 0.870 36 H 0.233 0.767 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.187 0.813 40 H 0.210 0.790 41 H 0.238 0.762 42 H 0.234 0.766 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.211 -19.909 16.262 26.229 hybrid contribution -1.181 1.291 -0.108 1.753 sum 4.030 -18.618 16.154 24.977 Atomic orbital electron populations 1.22211 0.86901 1.01198 1.00195 1.61870 1.08280 1.15156 1.41772 1.19420 0.93760 0.83939 0.94821 1.21463 1.34743 0.97385 1.02618 0.92077 1.25913 0.95103 0.98186 1.00642 1.70067 1.39409 1.11889 1.36198 0.85470 0.78966 0.77136 0.79271 1.18886 1.20849 1.19700 1.22683 0.94794 0.99790 0.92436 1.21764 0.94857 0.92837 0.84754 0.91769 1.86702 1.77014 1.31862 1.40966 1.23786 0.77919 1.02974 0.99553 1.86185 1.23639 1.73482 1.40180 1.19298 0.91170 0.89694 0.87618 1.21563 1.02798 1.04235 0.93372 1.21310 0.90986 0.91716 0.98948 1.19815 0.97595 1.06956 0.97548 1.24423 0.88939 0.85498 0.96825 1.68447 1.11660 1.21865 1.25182 1.25451 1.01954 0.87720 0.83477 1.68766 1.09377 1.17146 1.31361 1.18677 0.89984 0.93694 0.92921 1.19958 0.92204 1.08427 1.00842 0.92933 0.97037 0.89423 1.01826 0.97877 0.92747 0.94138 0.87043 0.76749 0.89071 0.87333 0.81272 0.79016 0.76183 0.76606 0.85882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 9.32 127.69 1.19 2.70 16 2 N -0.55 -22.40 4.66 -927.06 -4.32 -26.72 16 3 C 0.21 10.96 4.57 85.56 0.39 11.35 16 4 C -0.52 -30.17 8.58 25.60 0.22 -29.95 16 5 H 0.06 3.46 7.10 -2.92 -0.02 3.44 16 6 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 7 N -0.94 -57.19 13.29 21.45 0.28 -56.90 16 8 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 9 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 12 C 0.03 0.93 4.61 86.30 0.40 1.33 16 13 C 0.12 3.64 3.30 30.59 0.10 3.74 16 14 H 0.06 2.65 6.46 -2.39 -0.02 2.64 16 15 O -0.56 -18.14 13.25 -144.34 -1.91 -20.05 16 16 C 0.03 0.69 4.36 71.98 0.31 1.00 16 17 O -0.32 -8.96 10.08 -86.42 -0.87 -9.83 16 18 C 0.17 4.07 6.68 22.57 0.15 4.22 16 19 C -0.20 -2.94 8.94 22.16 0.20 -2.75 16 20 C -0.01 -0.10 9.79 22.27 0.22 0.11 16 21 C -0.21 -3.64 5.74 -21.28 -0.12 -3.76 16 22 C 0.22 2.84 11.15 85.25 0.95 3.79 16 23 N -0.56 -9.89 10.39 -198.78 -2.07 -11.96 16 24 C 0.30 6.02 12.23 180.87 2.21 8.23 16 25 N -0.55 -14.27 10.45 -193.77 -2.03 -16.29 16 26 C 0.17 4.35 6.61 40.18 0.27 4.61 16 27 C -0.19 -5.32 9.97 22.60 0.23 -5.09 16 28 H 0.05 2.06 7.02 -2.39 -0.02 2.04 16 29 H 0.01 0.40 8.07 -2.39 -0.02 0.38 16 30 H 0.09 2.31 7.88 -2.39 -0.02 2.29 16 31 H -0.04 -2.03 8.07 -2.39 -0.02 -2.05 16 32 H 0.00 0.19 6.34 -2.39 -0.02 0.17 16 33 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.04 1.17 8.05 -2.39 -0.02 1.15 16 35 H 0.11 2.28 7.82 -2.39 -0.02 2.27 16 36 H 0.38 8.17 9.05 -74.06 -0.67 7.50 16 37 H 0.09 1.60 7.62 -2.39 -0.02 1.58 16 38 H 0.11 1.39 7.65 -2.39 -0.02 1.38 16 39 H 0.17 1.41 6.22 -2.91 -0.02 1.39 16 40 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 41 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 42 H 0.22 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.12 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -82.41 362.16 -1.34 -83.75 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.37 Total: 10.80 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 7.17 Total: -0.03 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -8.12 Total: -111.88 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -2.78 Total: -29.88 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -82.41 -1.34 -83.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414154977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.491 kcal (2) G-P(sol) polarization free energy of solvation -82.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds