Wall clock time and date at job start Tue Mar 31 2020 11:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00278 * 2 1 4 4 H 1.09007 * 112.88214 * 21.84595 * 3 2 1 5 5 C 1.53948 * 113.66546 * 250.49959 * 3 2 1 6 6 C 1.53946 * 87.29214 * 220.70118 * 5 3 2 7 7 H 1.09001 * 113.66441 * 270.16603 * 6 5 3 8 8 N 1.46507 * 113.66224 * 139.20862 * 6 5 3 9 9 S 1.65598 * 119.99849 * 114.50102 * 8 6 5 10 10 O 1.42095 * 104.28128 * 308.92605 * 9 8 6 11 11 O 1.42104 * 104.27651 * 181.07016 * 9 8 6 12 12 C 1.81399 * 104.45041 * 65.00207 * 9 8 6 13 13 C 1.52997 * 109.47147 * 179.97438 * 12 9 8 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 9 15 15 C 1.50698 * 109.47184 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.52904 * 113.74320 * 153.26793 * 3 2 1 24 24 C 1.52908 * 121.13807 * 265.10593 * 23 3 2 25 25 C 1.53958 * 86.77924 * 100.82083 * 24 23 3 26 26 C 1.52906 * 121.13883 * 13.67244 * 23 3 2 27 27 H 1.08995 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46586 * 299.99602 * 1 2 3 29 29 H 1.08997 * 109.47005 * 59.99131 * 1 2 3 30 30 H 1.09005 * 113.57891 * 106.09573 * 5 3 2 31 31 H 1.09000 * 113.65006 * 335.31882 * 5 3 2 32 32 H 0.96998 * 119.99663 * 294.50633 * 8 6 5 33 33 H 1.09001 * 109.47190 * 59.99892 * 12 9 8 34 34 H 1.09004 * 109.47089 * 299.99759 * 12 9 8 35 35 H 1.09001 * 109.46832 * 60.00079 * 13 12 9 36 36 H 1.09001 * 109.47502 * 299.99601 * 13 12 9 37 37 H 1.09001 * 109.47002 * 60.00426 * 14 13 12 38 38 H 1.08993 * 109.46955 * 299.99989 * 14 13 12 39 39 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 40 40 H 1.08997 * 113.66743 * 215.28683 * 24 23 3 41 41 H 1.09003 * 113.66436 * 346.35061 * 24 23 3 42 42 H 1.09008 * 113.57765 * 270.13322 * 25 24 23 43 43 H 1.08998 * 113.57679 * 139.34365 * 25 24 23 44 44 H 1.09002 * 113.65897 * 13.64966 * 26 23 3 45 45 H 1.08997 * 113.66793 * 144.71330 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3312 2.0719 0.3737 5 6 2.6917 1.6785 -1.3291 6 6 3.8146 2.3153 -0.4905 7 1 3.6435 3.3660 -0.2561 8 7 5.1581 2.0606 -1.0166 9 16 6.0753 3.3154 -1.5877 10 8 5.2193 3.9881 -2.5009 11 8 7.2771 2.6986 -2.0288 12 6 6.3879 4.3481 -0.1295 13 6 7.2374 5.5552 -0.5320 14 6 7.5005 6.4265 0.6979 15 6 8.3377 7.6152 0.3016 16 1 8.6505 7.7373 -0.7249 17 6 8.7035 8.5475 1.2493 18 7 8.3223 8.3992 2.4991 19 14 9.7407 10.0213 0.7579 20 1 9.9962 10.8670 1.9516 21 1 9.0172 10.8163 -0.2668 22 1 11.0337 9.5523 0.1982 23 6 3.4027 1.3594 0.6296 24 6 3.5918 1.7356 2.0996 25 6 3.7476 0.2289 2.3751 26 6 4.1941 0.0813 0.9092 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 2.1274 2.3991 -1.9212 31 1 3.0172 0.8161 -1.9108 32 1 5.5101 1.1568 -1.0303 33 1 6.9197 3.7643 0.6219 34 1 5.4391 4.6921 0.2823 35 1 6.7059 6.1391 -1.2834 36 1 8.1862 5.2109 -0.9434 37 1 8.0318 5.8429 1.4497 38 1 6.5516 6.7708 1.1090 39 1 7.7834 7.6340 2.7543 40 1 4.4973 2.3112 2.2909 41 1 2.7047 2.1744 2.5565 42 1 2.8060 -0.2735 2.5969 43 1 4.5320 -0.0037 3.0954 44 1 3.7881 -0.8014 0.4151 45 1 5.2689 0.1920 0.7660 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416570267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:35 Heat of formation + Delta-G solvation = -92.430235 kcal Electronic energy + Delta-G solvation = -25322.001948 eV Core-core repulsion = 21660.685008 eV Total energy + Delta-G solvation = -3661.316939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13749 -37.32951 -36.95044 -35.82893 -35.48551 -34.94411 -32.45978 -32.30432 -27.50913 -27.22825 -26.02383 -24.93180 -24.00797 -23.47671 -21.35883 -21.02035 -19.29894 -18.82592 -17.64357 -17.33476 -16.90552 -16.24954 -16.05693 -15.81570 -15.66620 -15.04393 -14.83545 -14.39306 -14.14898 -13.76327 -13.52804 -13.32176 -12.79705 -12.63492 -12.38136 -12.34322 -12.07895 -12.05920 -11.97592 -11.90224 -11.85619 -11.55438 -11.48199 -11.33867 -10.99022 -10.81722 -10.76966 -10.61338 -10.47825 -10.14615 -10.11289 -9.81892 -9.67029 -9.34731 -8.59961 -8.38319 -6.42146 -4.12007 0.38823 2.73317 3.42498 3.43064 3.44577 3.63171 3.85142 4.01826 4.12867 4.26667 4.35380 4.45710 4.50841 4.52232 4.60616 4.74578 4.89277 5.01639 5.02981 5.04500 5.11062 5.19454 5.29419 5.35681 5.37372 5.40825 5.53036 5.59630 5.69435 5.73647 5.75490 5.82464 6.04107 6.09899 6.13253 6.20065 6.29473 6.69595 6.83369 6.88858 7.24706 7.36913 8.11976 8.39924 8.81692 9.60212 10.98628 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.002990 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.682557 B = 9362.437398 C = 9980.022935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.086 3.914 4 H 0.093 0.907 5 C -0.163 4.163 6 C 0.143 3.857 7 H 0.116 0.884 8 N -1.106 6.106 9 S 2.600 3.400 10 O -0.959 6.959 11 O -0.963 6.963 12 C -0.613 4.613 13 C -0.098 4.098 14 C 0.018 3.982 15 C -0.607 4.607 16 H 0.052 0.948 17 C 0.016 3.984 18 N -0.912 5.912 19 Si 1.069 2.931 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 C -0.109 4.109 24 C -0.130 4.130 25 C -0.134 4.134 26 C -0.109 4.109 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.416 0.584 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.268 0.732 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.644 -18.679 -2.181 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.028 3.972 4 H 0.111 0.889 5 C -0.203 4.203 6 C 0.034 3.966 7 H 0.133 0.867 8 N -0.862 5.862 9 S 2.695 3.305 10 O -0.949 6.949 11 O -0.953 6.953 12 C -0.744 4.744 13 C -0.138 4.138 14 C -0.020 4.020 15 C -0.646 4.646 16 H 0.070 0.930 17 C -0.188 4.188 18 N -0.548 5.548 19 Si 0.897 3.103 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.111 4.111 24 C -0.167 4.167 25 C -0.172 4.172 26 C -0.146 4.146 27 H 0.102 0.898 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.251 0.749 33 H 0.147 0.853 34 H 0.143 0.857 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.030 0.970 38 H 0.029 0.971 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.604 -17.199 -2.522 22.704 hybrid contribution -0.987 -1.451 0.126 1.759 sum -15.591 -18.651 -2.396 24.427 Atomic orbital electron populations 1.22793 0.81239 1.02694 1.00019 1.87927 1.19425 1.26875 1.94539 1.23227 0.92444 0.85503 0.96056 0.88877 1.23945 0.97289 1.01770 0.97275 1.21733 0.81444 0.99200 0.94202 0.86664 1.55624 1.25752 1.23905 1.80932 1.05332 0.73559 0.74564 0.77022 1.93581 1.66335 1.75366 1.59570 1.93584 1.46960 1.74606 1.80131 1.30597 1.10434 1.13340 1.20032 1.21356 0.97460 0.92820 1.02147 1.19176 0.96597 0.94339 0.91907 1.22071 1.36069 1.09086 0.97334 0.93009 1.25884 0.97783 1.01537 0.93596 1.70799 1.34990 1.31384 1.17607 0.83540 0.75879 0.75356 0.75526 1.20719 1.21316 1.21315 1.23241 0.95381 0.97955 0.94499 1.22830 1.02565 0.97154 0.94183 1.22765 1.01622 0.96231 0.96559 1.22426 0.99292 0.96288 0.96609 0.89753 0.94027 0.93954 0.90196 0.88487 0.74932 0.85313 0.85678 0.91416 0.91405 0.97046 0.97065 0.92169 0.89218 0.91200 0.90100 0.91452 0.90345 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.86 101.05 1.10 1.28 16 2 O -0.37 -3.26 9.91 -35.23 -0.35 -3.61 16 3 C 0.09 0.71 4.17 -26.29 -0.11 0.60 16 4 H 0.09 0.65 7.90 -51.93 -0.41 0.24 16 5 C -0.16 -1.50 7.72 -25.75 -0.20 -1.70 16 6 C 0.14 1.38 4.10 -67.48 -0.28 1.10 16 7 H 0.12 1.03 7.67 -51.93 -0.40 0.63 16 8 N -1.11 -11.81 5.50 -4.51 -0.02 -11.84 16 9 S 2.60 37.66 5.41 -107.50 -0.58 37.08 16 10 O -0.96 -16.65 17.82 -57.54 -1.03 -17.67 16 11 O -0.96 -16.89 18.08 -57.54 -1.04 -17.93 16 12 C -0.61 -9.19 6.07 37.16 0.23 -8.96 16 13 C -0.10 -2.00 5.16 -26.73 -0.14 -2.14 16 14 C 0.02 0.45 4.28 -27.88 -0.12 0.33 16 15 C -0.61 -17.33 9.11 -34.44 -0.31 -17.64 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 17 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 18 N -0.91 -27.72 13.65 55.43 0.76 -26.96 16 19 Si 1.07 25.28 29.90 -169.99 -5.08 20.20 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.11 -0.93 1.07 -154.72 -0.17 -1.10 16 24 C -0.13 -1.08 7.84 -26.28 -0.21 -1.28 16 25 C -0.13 -1.08 8.08 -25.74 -0.21 -1.28 16 26 C -0.11 -0.91 6.85 -26.28 -0.18 -1.09 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.42 3.83 7.39 -34.47 -0.25 3.57 16 33 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 34 H 0.12 1.62 7.75 -51.92 -0.40 1.22 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.01 0.29 8.01 -51.93 -0.42 -0.13 16 38 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 39 H 0.27 8.03 7.22 -40.82 -0.29 7.74 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.69 7.65 -51.93 -0.40 0.29 16 45 H 0.08 0.68 7.17 -51.93 -0.37 0.30 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -35.79 376.59 -10.00 -45.79 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.64 Total: 0.78 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: -0.69 Total: -31.52 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.73 Total: -38.80 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -2.41 Total: -39.20 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.20 kcal Atomic # 16 Polarization: 37.66 SS G_CDS: -0.58 Total: 37.08 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.79 -10.00 -45.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416570267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.639 kcal (2) G-P(sol) polarization free energy of solvation -35.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds