Wall clock time and date at job start Tue Mar 31 2020 11:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00278 * 2 1 4 4 H 1.09007 * 112.88214 * 21.84595 * 3 2 1 5 5 C 1.53948 * 113.66546 * 250.49959 * 3 2 1 6 6 C 1.53946 * 87.29214 * 220.70118 * 5 3 2 7 7 H 1.09001 * 113.66441 * 270.16603 * 6 5 3 8 8 N 1.46507 * 113.66224 * 139.20862 * 6 5 3 9 9 S 1.65598 * 119.99849 * 114.50102 * 8 6 5 10 10 O 1.42095 * 104.28128 * 308.92605 * 9 8 6 11 11 O 1.42104 * 104.27651 * 181.07016 * 9 8 6 12 12 C 1.81399 * 104.45041 * 65.00207 * 9 8 6 13 13 C 1.52997 * 109.47147 * 179.97438 * 12 9 8 14 14 C 1.53006 * 109.47127 * 179.97438 * 13 12 9 15 15 C 1.50698 * 109.47184 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 C 1.52904 * 113.74320 * 153.26793 * 3 2 1 24 24 C 1.52908 * 121.13807 * 265.10593 * 23 3 2 25 25 C 1.53958 * 86.77924 * 100.82083 * 24 23 3 26 26 C 1.52906 * 121.13883 * 13.67244 * 23 3 2 27 27 H 1.08995 * 109.47179 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46586 * 299.99602 * 1 2 3 29 29 H 1.08997 * 109.47005 * 59.99131 * 1 2 3 30 30 H 1.09005 * 113.57891 * 106.09573 * 5 3 2 31 31 H 1.09000 * 113.65006 * 335.31882 * 5 3 2 32 32 H 0.96998 * 119.99663 * 294.50633 * 8 6 5 33 33 H 1.09001 * 109.47190 * 59.99892 * 12 9 8 34 34 H 1.09004 * 109.47089 * 299.99759 * 12 9 8 35 35 H 1.09001 * 109.46832 * 60.00079 * 13 12 9 36 36 H 1.09001 * 109.47502 * 299.99601 * 13 12 9 37 37 H 1.09001 * 109.47002 * 60.00426 * 14 13 12 38 38 H 1.08993 * 109.46955 * 299.99989 * 14 13 12 39 39 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 40 40 H 1.08997 * 113.66743 * 215.28683 * 24 23 3 41 41 H 1.09003 * 113.66436 * 346.35061 * 24 23 3 42 42 H 1.09008 * 113.57765 * 270.13322 * 25 24 23 43 43 H 1.08998 * 113.57679 * 139.34365 * 25 24 23 44 44 H 1.09002 * 113.65897 * 13.64966 * 26 23 3 45 45 H 1.08997 * 113.66793 * 144.71330 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3312 2.0719 0.3737 5 6 2.6917 1.6785 -1.3291 6 6 3.8146 2.3153 -0.4905 7 1 3.6435 3.3660 -0.2561 8 7 5.1581 2.0606 -1.0166 9 16 6.0753 3.3154 -1.5877 10 8 5.2193 3.9881 -2.5009 11 8 7.2771 2.6986 -2.0288 12 6 6.3879 4.3481 -0.1295 13 6 7.2374 5.5552 -0.5320 14 6 7.5005 6.4265 0.6979 15 6 8.3377 7.6152 0.3016 16 1 8.6505 7.7373 -0.7249 17 6 8.7035 8.5475 1.2493 18 7 8.3223 8.3992 2.4991 19 14 9.7407 10.0213 0.7579 20 1 9.9962 10.8670 1.9516 21 1 9.0172 10.8163 -0.2668 22 1 11.0337 9.5523 0.1982 23 6 3.4027 1.3594 0.6296 24 6 3.5918 1.7356 2.0996 25 6 3.7476 0.2289 2.3751 26 6 4.1941 0.0813 0.9092 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 2.1274 2.3991 -1.9212 31 1 3.0172 0.8161 -1.9108 32 1 5.5101 1.1568 -1.0303 33 1 6.9197 3.7643 0.6219 34 1 5.4391 4.6921 0.2823 35 1 6.7059 6.1391 -1.2834 36 1 8.1862 5.2109 -0.9434 37 1 8.0318 5.8429 1.4497 38 1 6.5516 6.7708 1.1090 39 1 7.7834 7.6340 2.7543 40 1 4.4973 2.3112 2.2909 41 1 2.7047 2.1744 2.5565 42 1 2.8060 -0.2735 2.5969 43 1 4.5320 -0.0037 3.0954 44 1 3.7881 -0.8014 0.4151 45 1 5.2689 0.1920 0.7660 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416570267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:34 Heat of formation + Delta-G solvation = -117.679189 kcal Electronic energy + Delta-G solvation = -25323.096824 eV Core-core repulsion = 21660.685008 eV Total energy + Delta-G solvation = -3662.411816 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81561 -38.25104 -37.92929 -37.12508 -36.78129 -36.25750 -34.24475 -33.28237 -29.32378 -27.74643 -26.67419 -25.60861 -25.46514 -24.71106 -22.79147 -22.01696 -20.43817 -19.54978 -19.14186 -18.55040 -18.05180 -17.23331 -17.06855 -16.72449 -16.62584 -16.00598 -15.66769 -15.60918 -15.40182 -15.30509 -14.92698 -14.27029 -13.93133 -13.67160 -13.55365 -13.38193 -13.26392 -13.20155 -13.15724 -13.11582 -12.97759 -12.61641 -12.56618 -12.53581 -12.25975 -12.00868 -11.95363 -11.87724 -11.71672 -11.41935 -11.26645 -11.12127 -10.69745 -10.56320 -10.31071 -10.19133 -8.71245 -6.42268 -0.81568 1.52613 1.60290 1.68546 1.79951 2.54648 2.66910 2.83708 3.13259 3.17436 3.34364 3.44443 3.61674 3.64064 3.76422 3.80996 3.85966 3.96479 4.08078 4.24351 4.31374 4.48052 4.50331 4.56709 4.59173 4.62733 4.73751 4.80893 4.87725 4.87794 4.90605 4.94776 5.01905 5.11115 5.16066 5.25950 5.31602 5.37430 5.44304 5.56185 5.95350 6.01584 6.15961 6.31586 6.55645 7.38506 8.70464 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.002990 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.682557 B = 9362.437398 C = 9980.022935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.386 6.386 3 C 0.091 3.909 4 H 0.109 0.891 5 C -0.166 4.166 6 C 0.129 3.871 7 H 0.125 0.875 8 N -1.090 6.090 9 S 2.629 3.371 10 O -0.986 6.986 11 O -0.993 6.993 12 C -0.611 4.611 13 C -0.100 4.100 14 C 0.016 3.984 15 C -0.630 4.630 16 H 0.050 0.950 17 C -0.036 4.036 18 N -0.936 5.936 19 Si 1.114 2.886 20 H -0.281 1.281 21 H -0.269 1.269 22 H -0.270 1.270 23 C -0.105 4.105 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.111 4.111 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.425 0.575 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.000 1.000 38 H 0.002 0.998 39 H 0.258 0.742 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.393 -19.072 -2.254 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C 0.032 3.968 4 H 0.126 0.874 5 C -0.206 4.206 6 C 0.022 3.978 7 H 0.143 0.857 8 N -0.850 5.850 9 S 2.724 3.276 10 O -0.976 6.976 11 O -0.983 6.983 12 C -0.741 4.741 13 C -0.139 4.139 14 C -0.022 4.022 15 C -0.668 4.668 16 H 0.069 0.931 17 C -0.234 4.234 18 N -0.573 5.573 19 Si 0.935 3.065 20 H -0.207 1.207 21 H -0.194 1.194 22 H -0.195 1.195 23 C -0.107 4.107 24 C -0.169 4.169 25 C -0.169 4.169 26 C -0.149 4.149 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.262 0.738 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.361 -17.617 -2.604 23.519 hybrid contribution -0.833 -1.415 0.159 1.650 sum -16.194 -19.032 -2.446 25.109 Atomic orbital electron populations 1.22953 0.79965 1.03626 1.00718 1.87903 1.20889 1.27101 1.94566 1.23226 0.92563 0.85865 0.95158 0.87370 1.23955 0.97271 1.01572 0.97783 1.22044 0.80569 1.00203 0.95006 0.85739 1.55232 1.25800 1.23251 1.80721 1.04262 0.72726 0.74353 0.76283 1.93546 1.66920 1.76393 1.60708 1.93538 1.48749 1.75231 1.80814 1.30536 1.10853 1.11645 1.21091 1.21185 0.98511 0.94255 0.99974 1.19116 0.95366 0.94139 0.93585 1.22570 1.36386 1.10386 0.97411 0.93127 1.27387 0.98440 1.04378 0.93171 1.70920 1.36210 1.31507 1.18638 0.82970 0.75275 0.72477 0.75737 1.20671 1.19404 1.19510 1.23222 0.95606 0.97616 0.94264 1.22856 1.02811 0.97306 0.93900 1.22740 1.01732 0.96073 0.96315 1.22456 0.99483 0.96034 0.96902 0.88815 0.93070 0.93485 0.89991 0.89100 0.73808 0.83490 0.83435 0.91536 0.91772 0.98199 0.97976 0.93241 0.89467 0.90472 0.90041 0.91176 0.90873 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.86 113.37 1.23 1.48 16 2 O -0.39 -6.15 9.91 -148.98 -1.48 -7.62 16 3 C 0.09 1.32 4.17 30.88 0.13 1.45 16 4 H 0.11 1.24 7.90 -2.38 -0.02 1.22 16 5 C -0.17 -2.81 7.72 31.23 0.24 -2.56 16 6 C 0.13 2.27 4.10 45.28 0.19 2.45 16 7 H 0.12 1.95 7.67 -2.39 -0.02 1.94 16 8 N -1.09 -21.61 5.50 -168.17 -0.92 -22.53 16 9 S 2.63 73.19 5.41 -56.49 -0.31 72.89 16 10 O -0.99 -33.27 17.82 -127.65 -2.27 -35.55 16 11 O -0.99 -34.07 18.08 -127.65 -2.31 -36.38 16 12 C -0.61 -17.49 6.07 71.98 0.44 -17.05 16 13 C -0.10 -4.03 5.16 30.60 0.16 -3.87 16 14 C 0.02 0.82 4.28 29.85 0.13 0.94 16 15 C -0.63 -36.08 9.11 25.60 0.23 -35.85 16 16 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 17 C -0.04 -2.08 5.46 84.65 0.46 -1.62 16 18 N -0.94 -57.32 13.65 21.45 0.29 -57.03 16 19 Si 1.11 50.24 29.90 68.60 2.05 52.29 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 C -0.10 -1.60 1.07 -52.32 -0.06 -1.66 16 24 C -0.13 -1.92 7.84 30.89 0.24 -1.68 16 25 C -0.13 -1.88 8.08 31.23 0.25 -1.63 16 26 C -0.11 -1.69 6.85 30.88 0.21 -1.48 16 27 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.42 7.17 7.39 -96.75 -0.72 6.45 16 33 H 0.15 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.15 3.54 7.75 -2.39 -0.02 3.52 16 35 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 37 H 0.00 -0.02 8.01 -2.39 -0.02 -0.03 16 38 H 0.00 0.10 8.01 -2.39 -0.02 0.08 16 39 H 0.26 15.77 7.22 -92.71 -0.67 15.10 16 40 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 45 H 0.09 1.27 7.17 -2.39 -0.02 1.25 16 Total: -1.00 -76.02 376.59 -0.74 -76.76 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.35 Total: 18.25 kcal Atomic # 6 Polarization: -64.93 SS G_CDS: 3.86 Total: -61.08 kcal Atomic # 7 Polarization: -78.93 SS G_CDS: -0.63 Total: -79.56 kcal Atomic # 8 Polarization: -73.49 SS G_CDS: -6.06 Total: -79.55 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.05 Total: 52.29 kcal Atomic # 16 Polarization: 73.19 SS G_CDS: -0.31 Total: 72.89 kcal Total: -76.02 -0.74 -76.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416570267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.922 kcal (2) G-P(sol) polarization free energy of solvation -76.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds