Wall clock time and date at job start Tue Mar 31 2020 11:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99615 * 2 1 4 4 H 1.08991 * 112.88539 * 18.65322 * 3 2 1 5 5 C 1.53955 * 113.65933 * 247.18521 * 3 2 1 6 6 C 1.53950 * 87.29560 * 220.79412 * 5 3 2 7 7 H 1.08998 * 113.66197 * 139.20504 * 6 5 3 8 8 N 1.46494 * 113.74949 * 270.25346 * 6 5 3 9 9 S 1.65603 * 120.00154 * 242.22813 * 8 6 5 10 10 O 1.42097 * 104.28034 * 181.07095 * 9 8 6 11 11 O 1.42106 * 104.27367 * 308.92827 * 9 8 6 12 12 C 1.81399 * 104.44890 * 64.99699 * 9 8 6 13 13 C 1.52996 * 109.47195 * 180.02562 * 12 9 8 14 14 C 1.52999 * 109.47356 * 179.97438 * 13 12 9 15 15 C 1.50696 * 109.47521 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00118 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99956 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99803 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47472 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47138 * 119.99787 * 19 17 15 22 22 H 1.48501 * 109.47204 * 239.99711 * 19 17 15 23 23 C 1.52907 * 113.66203 * 150.00092 * 3 2 1 24 24 C 1.52909 * 121.13625 * 13.65222 * 23 3 2 25 25 C 1.53953 * 86.78247 * 209.38193 * 24 23 3 26 26 C 1.52909 * 121.13625 * 265.08983 * 23 3 2 27 27 H 1.09007 * 109.47325 * 300.00090 * 1 2 3 28 28 H 1.09001 * 109.47659 * 60.00215 * 1 2 3 29 29 H 1.09006 * 109.47181 * 180.02562 * 1 2 3 30 30 H 1.08999 * 113.58121 * 335.39888 * 5 3 2 31 31 H 1.09000 * 113.57495 * 106.19226 * 5 3 2 32 32 H 0.97003 * 120.00353 * 62.22347 * 8 6 5 33 33 H 1.09002 * 109.47091 * 300.00408 * 12 9 8 34 34 H 1.09000 * 109.47144 * 60.00125 * 12 9 8 35 35 H 1.09002 * 109.47271 * 300.00099 * 13 12 9 36 36 H 1.09002 * 109.47371 * 60.00405 * 13 12 9 37 37 H 1.09002 * 109.47147 * 300.00341 * 14 13 12 38 38 H 1.09000 * 109.46927 * 59.99960 * 14 13 12 39 39 H 0.97009 * 119.99785 * 179.97438 * 18 17 15 40 40 H 1.09007 * 113.66271 * 323.84820 * 24 23 3 41 41 H 1.09002 * 113.66600 * 94.90793 * 24 23 3 42 42 H 1.09002 * 113.57682 * 270.13011 * 25 24 23 43 43 H 1.08995 * 113.58442 * 139.33592 * 25 24 23 44 44 H 1.08998 * 113.65988 * 265.08366 * 26 23 3 45 45 H 1.08994 * 113.66219 * 36.14737 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3134 2.0797 0.3212 5 6 2.7609 1.6476 -1.2998 6 6 3.8397 2.3027 -0.4183 7 1 4.8579 2.1035 -0.7523 8 7 3.5970 3.7213 -0.1452 9 16 4.6789 4.8618 -0.6660 10 8 4.1380 6.0932 -0.2076 11 8 5.9354 4.3933 -0.1959 12 6 4.6007 4.7666 -2.4758 13 6 5.5683 5.7847 -3.0824 14 6 5.5029 5.7040 -4.6088 15 6 6.4555 6.7072 -5.2063 16 1 7.0487 7.3390 -4.5617 17 6 6.5698 6.8186 -6.5758 18 7 5.8479 6.0491 -7.3607 19 14 7.7512 8.0618 -7.3163 20 1 8.4419 8.7981 -6.2273 21 1 8.7564 7.3541 -8.1495 22 1 6.9952 9.0210 -8.1610 23 6 3.3678 1.3729 0.7002 24 6 4.1410 0.1010 1.0500 25 6 4.7330 0.8898 2.2321 26 6 3.4803 1.7825 2.1692 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1146 0.7711 -1.8427 31 1 2.2298 2.3548 -1.9368 32 1 2.8025 3.9928 0.3408 33 1 4.8793 3.7636 -2.7993 34 1 3.5861 4.9867 -2.8078 35 1 5.2902 6.7878 -2.7590 36 1 6.5829 5.5642 -2.7505 37 1 5.7813 4.7009 -4.9319 38 1 4.4884 5.9242 -4.9411 39 1 5.9281 6.1277 -8.3243 40 1 3.5032 -0.7292 1.3537 41 1 4.8792 -0.1826 0.2998 42 1 5.6559 1.4155 1.9870 43 1 4.8080 0.3079 3.1508 44 1 3.6908 2.8423 2.3129 45 1 2.6569 1.4250 2.7873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416570269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:40 Heat of formation + Delta-G solvation = -88.375860 kcal Electronic energy + Delta-G solvation = -25260.400261 eV Core-core repulsion = 21599.259133 eV Total energy + Delta-G solvation = -3661.141128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.10213 -37.33402 -36.91761 -35.80162 -35.56376 -34.68896 -32.20683 -32.10397 -27.83351 -27.14126 -26.04471 -24.82900 -24.25560 -23.72637 -21.22351 -20.65657 -19.31552 -18.83027 -17.64199 -16.70431 -16.64104 -16.33440 -16.19255 -15.79324 -15.54929 -15.24209 -14.81167 -14.49108 -14.22234 -13.56862 -13.31759 -13.08957 -12.95858 -12.61167 -12.48690 -12.29839 -12.11238 -11.97846 -11.90136 -11.82560 -11.79589 -11.47701 -11.38874 -11.25180 -10.94644 -10.87055 -10.82119 -10.56477 -10.41543 -10.30575 -9.97119 -9.69139 -9.52269 -9.33066 -9.08838 -8.42254 -6.06954 -4.09906 0.41315 2.73784 3.28657 3.36282 3.41177 3.46950 3.88865 4.04078 4.17284 4.33256 4.41580 4.42453 4.50429 4.56077 4.66745 4.85071 4.91505 5.06661 5.09731 5.15041 5.18117 5.29510 5.30128 5.33395 5.38214 5.48431 5.58348 5.67876 5.73595 5.78195 5.81067 5.87161 6.00584 6.17372 6.24284 6.26859 6.42909 6.80833 6.85880 6.95907 7.55797 7.65379 7.91181 8.31617 8.96567 9.54969 11.04267 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.002951 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.983799 B = 9486.758616 C =10165.938422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.075 3.925 4 H 0.088 0.912 5 C -0.170 4.170 6 C 0.150 3.850 7 H 0.114 0.886 8 N -1.104 6.104 9 S 2.599 3.401 10 O -0.962 6.962 11 O -0.959 6.959 12 C -0.607 4.607 13 C -0.106 4.106 14 C 0.031 3.969 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.108 4.108 24 C -0.101 4.101 25 C -0.143 4.143 26 C -0.127 4.127 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.414 0.586 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 -13.507 17.557 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.289 6.289 3 C 0.017 3.983 4 H 0.105 0.895 5 C -0.210 4.210 6 C 0.042 3.958 7 H 0.132 0.868 8 N -0.859 5.859 9 S 2.695 3.305 10 O -0.953 6.953 11 O -0.949 6.949 12 C -0.739 4.739 13 C -0.146 4.146 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.110 4.110 24 C -0.138 4.138 25 C -0.180 4.180 26 C -0.164 4.164 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.247 0.753 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.728 -13.199 17.880 24.260 hybrid contribution -0.431 0.672 -0.986 1.269 sum -10.160 -12.527 16.894 23.357 Atomic orbital electron populations 1.22788 0.81427 1.02633 0.99904 1.87931 1.19296 1.27213 1.94507 1.23559 0.93319 0.85141 0.96272 0.89452 1.24044 0.97926 1.01648 0.97353 1.21155 0.99652 0.79671 0.95346 0.86810 1.55529 1.41486 1.16726 1.72146 1.05390 0.73739 0.72928 0.78396 1.93583 1.78904 1.42745 1.80040 1.93578 1.41866 1.80640 1.78781 1.30558 1.10281 1.10118 1.22949 1.21507 0.95853 0.95192 1.02003 1.19063 0.97641 0.97644 0.86421 1.21291 1.23365 1.20110 0.91641 0.92319 1.25020 0.95992 0.96074 0.97308 1.69967 1.40464 1.39055 1.03914 0.86504 0.80881 0.81227 0.79230 1.19595 1.20932 1.20946 1.23183 0.95104 0.97992 0.94701 1.22454 0.98318 0.95166 0.97899 1.22884 0.98004 0.98448 0.98664 1.22686 0.98522 1.00522 0.94670 0.94219 0.93973 0.89803 0.87878 0.90040 0.75255 0.85396 0.85268 0.91595 0.91541 0.96083 0.96131 0.92951 0.88975 0.91038 0.89641 0.91480 0.90921 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.29 16 2 O -0.37 -3.43 10.02 -35.23 -0.35 -3.79 16 3 C 0.08 0.64 4.06 -26.28 -0.11 0.54 16 4 H 0.09 0.65 7.87 -51.93 -0.41 0.24 16 5 C -0.17 -1.50 7.72 -25.75 -0.20 -1.70 16 6 C 0.15 1.47 4.19 -67.48 -0.28 1.18 16 7 H 0.11 1.14 7.77 -51.93 -0.40 0.73 16 8 N -1.10 -11.36 5.08 -4.51 -0.02 -11.39 16 9 S 2.60 36.86 5.43 -107.50 -0.58 36.27 16 10 O -0.96 -16.47 18.08 -57.54 -1.04 -17.51 16 11 O -0.96 -16.34 17.58 -57.54 -1.01 -17.35 16 12 C -0.61 -9.05 6.07 37.16 0.23 -8.83 16 13 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 14 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 15 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.11 -0.97 0.96 -154.71 -0.15 -1.12 16 24 C -0.10 -0.87 7.47 -26.28 -0.20 -1.07 16 25 C -0.14 -1.25 8.08 -25.75 -0.21 -1.46 16 26 C -0.13 -1.11 7.70 -26.28 -0.20 -1.31 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.41 3.49 8.81 -34.47 -0.30 3.19 16 33 H 0.13 1.69 8.14 -51.92 -0.42 1.26 16 34 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.09 0.79 7.84 -51.93 -0.41 0.38 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.68 7.75 -51.93 -0.40 0.28 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 380.36 15.07 5.73 5.73 Total: -1.00 -34.66 380.36 -10.08 -44.74 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.81 Total: 0.11 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -0.71 Total: -27.62 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.71 Total: -37.10 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -2.40 Total: -38.65 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 36.86 SS G_CDS: -0.58 Total: 36.27 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.66 -10.08 -44.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416570269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.634 kcal (2) G-P(sol) polarization free energy of solvation -34.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds