Wall clock time and date at job start Tue Mar 31 2020 11:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 113.99615 * 2 1 4 4 H 1.08991 * 112.88539 * 18.65322 * 3 2 1 5 5 C 1.53955 * 113.65933 * 247.18521 * 3 2 1 6 6 C 1.53950 * 87.29560 * 220.79412 * 5 3 2 7 7 H 1.08998 * 113.66197 * 139.20504 * 6 5 3 8 8 N 1.46494 * 113.74949 * 270.25346 * 6 5 3 9 9 S 1.65603 * 120.00154 * 242.22813 * 8 6 5 10 10 O 1.42097 * 104.28034 * 181.07095 * 9 8 6 11 11 O 1.42106 * 104.27367 * 308.92827 * 9 8 6 12 12 C 1.81399 * 104.44890 * 64.99699 * 9 8 6 13 13 C 1.52996 * 109.47195 * 180.02562 * 12 9 8 14 14 C 1.52999 * 109.47356 * 179.97438 * 13 12 9 15 15 C 1.50696 * 109.47521 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00118 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99956 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99803 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47472 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47138 * 119.99787 * 19 17 15 22 22 H 1.48501 * 109.47204 * 239.99711 * 19 17 15 23 23 C 1.52907 * 113.66203 * 150.00092 * 3 2 1 24 24 C 1.52909 * 121.13625 * 13.65222 * 23 3 2 25 25 C 1.53953 * 86.78247 * 209.38193 * 24 23 3 26 26 C 1.52909 * 121.13625 * 265.08983 * 23 3 2 27 27 H 1.09007 * 109.47325 * 300.00090 * 1 2 3 28 28 H 1.09001 * 109.47659 * 60.00215 * 1 2 3 29 29 H 1.09006 * 109.47181 * 180.02562 * 1 2 3 30 30 H 1.08999 * 113.58121 * 335.39888 * 5 3 2 31 31 H 1.09000 * 113.57495 * 106.19226 * 5 3 2 32 32 H 0.97003 * 120.00353 * 62.22347 * 8 6 5 33 33 H 1.09002 * 109.47091 * 300.00408 * 12 9 8 34 34 H 1.09000 * 109.47144 * 60.00125 * 12 9 8 35 35 H 1.09002 * 109.47271 * 300.00099 * 13 12 9 36 36 H 1.09002 * 109.47371 * 60.00405 * 13 12 9 37 37 H 1.09002 * 109.47147 * 300.00341 * 14 13 12 38 38 H 1.09000 * 109.46927 * 59.99960 * 14 13 12 39 39 H 0.97009 * 119.99785 * 179.97438 * 18 17 15 40 40 H 1.09007 * 113.66271 * 323.84820 * 24 23 3 41 41 H 1.09002 * 113.66600 * 94.90793 * 24 23 3 42 42 H 1.09002 * 113.57682 * 270.13011 * 25 24 23 43 43 H 1.08995 * 113.58442 * 139.33592 * 25 24 23 44 44 H 1.08998 * 113.65988 * 265.08366 * 26 23 3 45 45 H 1.08994 * 113.66219 * 36.14737 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3134 2.0797 0.3212 5 6 2.7609 1.6476 -1.2998 6 6 3.8397 2.3027 -0.4183 7 1 4.8579 2.1035 -0.7523 8 7 3.5970 3.7213 -0.1452 9 16 4.6789 4.8618 -0.6660 10 8 4.1380 6.0932 -0.2076 11 8 5.9354 4.3933 -0.1959 12 6 4.6007 4.7666 -2.4758 13 6 5.5683 5.7847 -3.0824 14 6 5.5029 5.7040 -4.6088 15 6 6.4555 6.7072 -5.2063 16 1 7.0487 7.3390 -4.5617 17 6 6.5698 6.8186 -6.5758 18 7 5.8479 6.0491 -7.3607 19 14 7.7512 8.0618 -7.3163 20 1 8.4419 8.7981 -6.2273 21 1 8.7564 7.3541 -8.1495 22 1 6.9952 9.0210 -8.1610 23 6 3.3678 1.3729 0.7002 24 6 4.1410 0.1010 1.0500 25 6 4.7330 0.8898 2.2321 26 6 3.4803 1.7825 2.1692 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1146 0.7711 -1.8427 31 1 2.2298 2.3548 -1.9368 32 1 2.8025 3.9928 0.3408 33 1 4.8793 3.7636 -2.7993 34 1 3.5861 4.9867 -2.8078 35 1 5.2902 6.7878 -2.7590 36 1 6.5829 5.5642 -2.7505 37 1 5.7813 4.7009 -4.9319 38 1 4.4884 5.9242 -4.9411 39 1 5.9281 6.1277 -8.3243 40 1 3.5032 -0.7292 1.3537 41 1 4.8792 -0.1826 0.2998 42 1 5.6559 1.4155 1.9870 43 1 4.8080 0.3079 3.1508 44 1 3.6908 2.8423 2.3129 45 1 2.6569 1.4250 2.7873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416570269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:40 Heat of formation + Delta-G solvation = -112.567444 kcal Electronic energy + Delta-G solvation = -25261.449287 eV Core-core repulsion = 21599.259133 eV Total energy + Delta-G solvation = -3662.190154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80544 -38.21437 -37.94802 -37.07964 -36.47120 -36.34507 -34.16594 -32.92771 -29.66047 -27.69145 -26.73320 -25.66989 -25.45006 -24.97824 -22.45628 -21.85961 -20.43760 -19.61434 -18.79627 -18.48694 -17.43849 -17.23961 -17.12044 -16.95116 -16.56368 -16.41679 -16.11721 -15.69210 -15.40699 -14.51978 -14.25365 -14.15361 -14.00687 -13.85735 -13.66758 -13.51263 -13.22624 -13.17047 -13.14434 -12.99277 -12.82481 -12.77695 -12.71291 -12.60541 -12.18383 -12.10253 -12.03542 -11.75323 -11.56326 -11.35985 -11.26852 -11.06924 -10.96919 -10.58033 -10.33285 -10.16554 -8.22969 -6.33665 -0.77533 1.39402 1.40328 1.53379 1.69370 2.39611 2.72185 2.87187 3.10758 3.18331 3.35032 3.51670 3.64988 3.75257 3.79030 3.88803 3.92635 3.99117 4.13009 4.31233 4.39539 4.55278 4.57366 4.59413 4.63982 4.66180 4.80351 4.89841 4.92910 4.95005 5.01222 5.05534 5.06321 5.11194 5.12865 5.27726 5.45788 5.48388 5.57141 5.63309 5.79650 6.04630 6.19833 6.36250 6.82211 7.35720 8.88629 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019481 B = 0.002951 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.983799 B = 9486.758616 C =10165.938422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.388 6.388 3 C 0.078 3.922 4 H 0.101 0.899 5 C -0.168 4.168 6 C 0.139 3.861 7 H 0.110 0.890 8 N -1.087 6.087 9 S 2.631 3.369 10 O -0.990 6.990 11 O -0.986 6.986 12 C -0.608 4.608 13 C -0.107 4.107 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.109 4.109 24 C -0.099 4.099 25 C -0.145 4.145 26 C -0.126 4.126 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.426 0.574 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.004 0.996 38 H 0.003 0.997 39 H 0.265 0.735 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.115 -13.785 18.271 25.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.306 6.306 3 C 0.020 3.980 4 H 0.119 0.881 5 C -0.208 4.208 6 C 0.031 3.969 7 H 0.128 0.872 8 N -0.846 5.846 9 S 2.726 3.274 10 O -0.980 6.980 11 O -0.976 6.976 12 C -0.739 4.739 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.590 4.590 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.111 4.111 24 C -0.137 4.137 25 C -0.182 4.182 26 C -0.163 4.163 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.262 0.738 33 H 0.164 0.836 34 H 0.166 0.834 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.356 -13.471 18.599 25.192 hybrid contribution -0.288 0.677 -1.183 1.393 sum -10.644 -12.795 17.416 24.090 Atomic orbital electron populations 1.22941 0.80208 1.03564 1.00545 1.87904 1.20697 1.27493 1.94555 1.23574 0.93301 0.85433 0.95689 0.88144 1.24039 0.97536 1.01626 0.97589 1.21318 0.99990 0.79068 0.96505 0.87204 1.55057 1.41344 1.16438 1.71715 1.04229 0.73246 0.72437 0.77441 1.93542 1.79359 1.44746 1.80345 1.93545 1.43881 1.81120 1.79067 1.30521 1.10016 1.09568 1.23788 1.21317 0.97493 0.96976 0.98828 1.18957 0.95901 0.95923 0.89908 1.21771 1.24024 1.20841 0.92330 0.92228 1.25922 0.97714 0.98038 0.97864 1.70074 1.41917 1.40588 1.04331 0.85441 0.78680 0.78764 0.78445 1.18817 1.20232 1.20227 1.23177 0.95510 0.97790 0.94613 1.22446 0.98276 0.95139 0.97791 1.22875 0.97505 0.98587 0.99266 1.22714 0.98820 1.00100 0.94666 0.93233 0.93649 0.88846 0.87892 0.89383 0.73769 0.83650 0.83429 0.91599 0.91540 0.97782 0.97844 0.92645 0.88637 0.91178 0.91007 0.90383 0.91605 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.85 113.37 1.23 1.50 16 2 O -0.39 -6.40 10.02 -148.98 -1.49 -7.89 16 3 C 0.08 1.17 4.06 30.89 0.13 1.30 16 4 H 0.10 1.23 7.87 -2.39 -0.02 1.21 16 5 C -0.17 -2.67 7.72 31.23 0.24 -2.43 16 6 C 0.14 2.51 4.19 45.28 0.19 2.70 16 7 H 0.11 2.09 7.77 -2.39 -0.02 2.07 16 8 N -1.09 -20.65 5.08 -168.18 -0.86 -21.50 16 9 S 2.63 72.04 5.43 -56.49 -0.31 71.73 16 10 O -0.99 -32.92 18.08 -127.65 -2.31 -35.23 16 11 O -0.99 -33.03 17.58 -127.65 -2.24 -35.27 16 12 C -0.61 -17.57 6.07 71.98 0.44 -17.14 16 13 C -0.11 -4.28 5.16 30.59 0.16 -4.12 16 14 C 0.03 1.60 4.97 29.85 0.15 1.75 16 15 C -0.55 -31.26 9.11 25.60 0.23 -31.03 16 16 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 17 C 0.00 0.16 5.46 84.66 0.46 0.62 16 18 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 19 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 C -0.11 -1.78 0.96 -52.31 -0.05 -1.83 16 24 C -0.10 -1.59 7.47 30.89 0.23 -1.36 16 25 C -0.14 -2.38 8.08 31.23 0.25 -2.13 16 26 C -0.13 -1.99 7.70 30.89 0.24 -1.75 16 27 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.43 6.32 8.81 -96.74 -0.85 5.47 16 33 H 0.15 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 40 H 0.10 1.49 7.84 -2.38 -0.02 1.47 16 41 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.13 7.75 -2.39 -0.02 1.11 16 45 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -73.55 380.36 -0.89 -74.44 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.11 Total: 16.65 kcal Atomic # 6 Polarization: -57.79 SS G_CDS: 3.89 Total: -53.90 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -0.57 Total: -76.65 kcal Atomic # 8 Polarization: -72.35 SS G_CDS: -6.05 Total: -78.40 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 72.04 SS G_CDS: -0.31 Total: 71.73 kcal Total: -73.55 -0.89 -74.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416570269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.126 kcal (2) G-P(sol) polarization free energy of solvation -73.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds